MD10G1134300.v1.1

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000199
Physical Location & Seq
Forward (+)
21625307 .. 21626143
837 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1134300.v1.1.491

Sequence Viewer

Length: 837 bp
ATGGCTTTCCACACTCGCTCTAACAGCTTCCCCTCAAGGCCACACCCGATCGTTCAACAAGTTGATGAACAGTTGTCTAGATTGAGGTCTTCCGAAACCACCTCCACATCTTCCATATCCATCAACCACAACCTAAGTAGCATCGGAGACTTGTATGGTTGTGTTGATAAGTTGCTTCAGTTGCCCCTCACTCAACAAGCCTTGGCCCAGGAGCAGAATGAGAAATGGATTAATGAGCTATTAGATGGCTCTCTCAGACTCTTGGACGTTTGCAGCACTGCCAAGGATGCGGTCTTGCAAACGAAGGCATATGTACAGGATCTTCAATCGATCATAAGAAGAACGCGAGGAGGGGAATCTGGAGCTCTCACAAGTGAGGTTAACAAATACTTGAGCTTCAGGAAGATGGTTAAAAAGGCAATCCAAAAGGCTATGAAGAATCTTAAGGGAAGCGAAAGAAAATCCACATTTTCTTCTCCTAGCAACGACAACGAGACTGTTGCCATTATTAGCAAGTTGAGAGATGTTGAAAAAATCACTCTCACAGTGTTCAAATCACTTCTGTTCTTCGTCTCTGGGCCAAAGTCAAAGCCAGGCAGCTGGTCATTGGTTTCCAAGATGGTTCCCACCAAAAAAGTTGCATGCGACGAAGAAACTGAGGCAAATGAATTTGCACAAGTCGATGCTGCACTACATAAGACAATCAAATCTGAGAACACGCAGAACCAGCTTGAGAAGCTGGAGTCATGCATTCAAGATCAGGAAGAAGGACTTGAGAGCCTATTTAGGCAAATGATCAAAACAAGAGTCTCCCTCCTTAACATCCTAAATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

279

Amino Acids

31.13

Weight (kDa)

8.94

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 45 - 275 1.4e-86 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 346
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 2 cut(s) 161, 382
AfaI GTAC 1 cut(s) 315
AflII CTTAAG 1 cut(s) 443
AgsI TTSAA 5 cut(s) 56, 326, 530, 553, 755
AjnI CCWGG 2 cut(s) 207, 592
AluBI AGCT 7 cut(s) 27, 238, 365, 396, 600, 730, 739
AluI AGCT 7 cut(s) 27, 238, 365, 396, 600, 730, 739
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 4 cut(s) 141, 488, 577, 814
AlwI GGATC 1 cut(s) 327
AoxI GGCC 3 cut(s) 38, 204, 578
ApeKI GCWGC 3 cut(s) 273, 597, 686
ApoI RAATTY 1 cut(s) 668
ArsI GACNNNNNNTTYG 2 cut(s) 792, 824
AseI ATTAAT 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 205, 578
BanII GRGCYC 1 cut(s) 367
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 3 cut(s) 285, 609, 673
BccI CCATC 4 cut(s) 128, 239, 400, 613
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 2 cut(s) 209, 594
BclI TGATCA 1 cut(s) 795
BcoDI GTCTC 4 cut(s) 141, 488, 577, 814
BfaI CTAG 3 cut(s) 78, 480, 835
BfrI CTTAAG 1 cut(s) 443
BisI GCNGC 3 cut(s) 274, 598, 687
BlsI GCNGC 3 cut(s) 275, 599, 688
Bme1390I CCNGG 2 cut(s) 209, 594
BmgT120I GGNCC 2 cut(s) 205, 578
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 2 cut(s) 209, 594
BmsI GCATC 3 cut(s) 150, 277, 673
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 798, 830
BpmI CTGGAG 2 cut(s) 381, 761
BpuEI CTTGAG 4 cut(s) 19, 412, 752, 794
Bsa29I ATCGAT 1 cut(s) 329
BsaJI CCNNGG 3 cut(s) 201, 207, 282
BseBI CCWGG 2 cut(s) 209, 594
BseCI ATCGAT 1 cut(s) 329
BseDI CCNNGG 3 cut(s) 201, 207, 282
BseGI GGATG 2 cut(s) 292, 822
BseMII CTCAG 3 cut(s) 268, 648, 702
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 3 cut(s) 285, 609, 673
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 3 cut(s) 40, 206, 580
BshVI ATCGAT 1 cut(s) 329
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 367
BsmAI GTCTC 4 cut(s) 141, 488, 577, 814
BsmBI CGTCTC 1 cut(s) 577
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 3 cut(s) 40, 206, 580
Bsp1286I GDGCHC 1 cut(s) 367
Bsp1407I TGTACA 1 cut(s) 313
Bsp143I GATC 5 cut(s) 48, 319, 330, 757, 795
BspACI CCGC 1 cut(s) 290
BspANI GGCC 3 cut(s) 40, 206, 580
BspCNI CTCAG 3 cut(s) 267, 649, 703
BspDI ATCGAT 1 cut(s) 329
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 624
BspPI GGATC 1 cut(s) 327
BspTI CTTAAG 1 cut(s) 443
BsrGI TGTACA 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 201, 207, 282
BssMI GATC 5 cut(s) 48, 319, 330, 757, 795
BssT1I CCWWGG 2 cut(s) 201, 282
Bst2UI CCWGG 2 cut(s) 209, 594
Bst4CI ACNGT 3 cut(s) 72, 499, 547
BstAFI CTTAAG 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 643
BstDEI CTNAG 4 cut(s) 134, 254, 657, 711
BstF5I GGATG 2 cut(s) 292, 822
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 5 cut(s) 51, 322, 333, 760, 798
BstMAI GTCTC 4 cut(s) 141, 488, 577, 814
BstMBI GATC 5 cut(s) 48, 319, 330, 757, 795
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 5 cut(s) 24, 181, 287, 727, 736
BstNI CCWGG 2 cut(s) 209, 594
BstNSI RCATGY 1 cut(s) 645
BstSCI CCNGG 2 cut(s) 207, 592
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 3 cut(s) 285, 609, 673
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 600
BstYI RGATCY 1 cut(s) 319
Bsu15I ATCGAT 1 cut(s) 329
BsuRI GGCC 3 cut(s) 40, 206, 580
BsuTUI ATCGAT 1 cut(s) 329
BtsCI GGATG 2 cut(s) 292, 822
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 552
Cac8I GCNNGC 1 cut(s) 643
Cfr13I GGNCC 2 cut(s) 205, 578
ClaI ATCGAT 1 cut(s) 329
Csp6I GTAC 1 cut(s) 314
CviAII CATG 2 cut(s) 642, 747
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 4 cut(s) 134, 254, 657, 711
DpnI GATC 5 cut(s) 50, 321, 332, 759, 797
DpnII GATC 5 cut(s) 48, 319, 330, 757, 795
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 2 cut(s) 201, 282
Eco24I GRGCYC 1 cut(s) 367
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 161, 382
EcoICRI GAGCTC 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 207, 592
EcoT14I CCWWGG 2 cut(s) 201, 282
EcoT22I ATGCAT 1 cut(s) 752
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 2 cut(s) 201, 282
Esp3I CGTCTC 1 cut(s) 577
FaeI CATG 2 cut(s) 645, 750
FaiI YATR 9 cut(s) 116, 156, 310, 312, 335, 434, 643, 696, 748
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FatI CATG 2 cut(s) 641, 746
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 795
Fnu4HI GCNGC 3 cut(s) 274, 598, 687
FokI GGATG 2 cut(s) 299, 809
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 3 cut(s) 274, 598, 687
FspBI CTAG 3 cut(s) 78, 480, 835
GluI GCNGC 3 cut(s) 274, 598, 687
GsuI CTGGAG 2 cut(s) 381, 761
HaeIII GGCC 3 cut(s) 40, 206, 580
Hin1II CATG 2 cut(s) 645, 750
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 5 cut(s) 258, 356, 439, 743, 807
HpaI GTTAAC 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 4 cut(s) 94, 146, 257, 712
Hpy188III TCNNGA 5 cut(s) 78, 360, 400, 755, 761
Hpy8I GTNNAC 1 cut(s) 382
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 2 cut(s) 298, 761
HpyCH4III ACNGT 3 cut(s) 72, 499, 547
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 6 cut(s) 273, 298, 641, 674, 689, 750
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 181, 287, 727, 736
HpyF3I CTNAG 4 cut(s) 134, 254, 657, 711
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 2 cut(s) 645, 750
Ksp22I TGATCA 1 cut(s) 795
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 5 cut(s) 48, 319, 330, 757, 795
LmnI GCTCC 2 cut(s) 211, 362
Lsp1109I GCAGC 3 cut(s) 285, 609, 673
LweI GCATC 3 cut(s) 150, 277, 673
MaeI CTAG 3 cut(s) 78, 480, 835
MaeII ACGT 1 cut(s) 267
MalI GATC 5 cut(s) 50, 321, 332, 759, 797
MboI GATC 5 cut(s) 48, 319, 330, 757, 795
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 1 cut(s) 668
MlyI GAGTC 3 cut(s) 252, 752, 816
MnlI CCTC 9 cut(s) 43, 78, 112, 197, 341, 344, 370, 652, 824
Mph1103I ATGCAT 1 cut(s) 752
MseI TTAA 5 cut(s) 231, 381, 411, 444, 819
MspA1I CMGCKG 1 cut(s) 600
MspCI CTTAAG 1 cut(s) 443
MspR9I CCNGG 2 cut(s) 209, 594
Mva1269I GAATGC 1 cut(s) 750
MvaI CCWGG 2 cut(s) 209, 594
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 5 cut(s) 24, 181, 287, 727, 736
NdeI CATATG 1 cut(s) 310
NdeII GATC 5 cut(s) 48, 319, 330, 757, 795
NlaIII CATG 2 cut(s) 645, 750
NlaIV GGNNCC 1 cut(s) 624
NsiI ATGCAT 1 cut(s) 752
NspI RCATGY 1 cut(s) 645
PaeI GCATGC 1 cut(s) 645
PctI GAATGC 1 cut(s) 750
PfeI GAWTC 2 cut(s) 356, 439
PkrI GCNGC 3 cut(s) 275, 599, 688
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 3 cut(s) 252, 751, 815
PpsI GAGTC 3 cut(s) 252, 751, 815
PshBI ATTAAT 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 207, 592
PspGI CCWGG 2 cut(s) 207, 592
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 2 cut(s) 205, 578
PsuI RGATCY 1 cut(s) 319
PvuI CGATCG 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 600
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SacI GAGCTC 1 cut(s) 367
SaqAI TTAA 5 cut(s) 231, 381, 411, 444, 819
SatI GCNGC 3 cut(s) 274, 598, 687
Sau3AI GATC 5 cut(s) 48, 319, 330, 757, 795
Sau96I GGNCC 2 cut(s) 205, 578
SchI GAGTC 3 cut(s) 252, 752, 816
ScrFI CCNGG 2 cut(s) 209, 594
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 3 cut(s) 150, 277, 673
SmlI CTYRAG 5 cut(s) 34, 391, 443, 731, 773
SmoI CTYRAG 5 cut(s) 34, 391, 443, 731, 773
SphI GCATGC 1 cut(s) 645
Sse9I AATT 1 cut(s) 668
SsiI CCGC 1 cut(s) 290
SspMI CTAG 3 cut(s) 78, 480, 835
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 2 cut(s) 207, 592
StyI CCWWGG 2 cut(s) 201, 282
TaaI ACNGT 3 cut(s) 72, 499, 547
TaiI ACGT 1 cut(s) 270
TaqI TCGA 2 cut(s) 329, 681
TasI AATT 1 cut(s) 668
TatI WGTACW 1 cut(s) 313
TfiI GAWTC 2 cut(s) 356, 439
Tru1I TTAA 5 cut(s) 231, 381, 411, 444, 819
Tru9I TTAA 5 cut(s) 231, 381, 411, 444, 819
TscAI CASTG 2 cut(s) 283, 552
TseI GCWGC 3 cut(s) 273, 597, 686
TspDTI ATGAA 3 cut(s) 81, 449, 681
TspRI CASTG 2 cut(s) 283, 552
Vha464I CTTAAG 1 cut(s) 443
VspI ATTAAT 1 cut(s) 231
XapI RAATTY 1 cut(s) 668
XbaI TCTAGA 1 cut(s) 77
XceI RCATGY 1 cut(s) 645
XspI CTAG 3 cut(s) 78, 480, 835
Zsp2I ATGCAT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.