FvH4_2g16290

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Forward (+)
14214643 .. 14215616
974 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16290.t1

Sequence Viewer

Length: 834 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCCTCCCGGCTGCACCCTCTCATTCAAGAAGTTGATGAGCATTTGTGCCGATTGAGGTCTTCTGAAGCCACATCCACATCTTCATCATCAATAAGCCACAAACTAAGCGTCCTGCAAGACTTGCTTGATTGTGTCAATAGGTTTCTTCAGTTGCAAGGCACCCAACAAGCATTAGCACAAGAGCAACAACAGAAATGGGATAATGAGCTATTGGATGGCTCTCTCCGGCTCTTGGATATTTGCAGCACCACAAAGGATTCCCTTTCAGAATCCAAGGAGTGCATACAAGACCTTCAATCAATCATTAGAAGAAAGCGGGGAGGTGAAAATGGACTCACAAGTGAGGTCAGGAAATACTTGAGCTCTCGGAAGATGGTGAAGAAGTCAATCGTCAAGGCTTTGGGAAATCTGAAGGCAATGGAAAACAGATCCCCTTTCTCTTCCGCCAACAAAGACCAAGAGACGATTGCCATCGTTAGCAAGCTAAGGGATGTTGAAGGAGTCACTCTTAAAGTCTTTGAATCCATGCTGTCCTTTATCGCTGGGACAAAGTTGAAGCCTAGCAGCTGGTCTTTGGTTTCCAAGATTGTGCAGTCTAAAAGAATAGCTTGTGATGAAGAACCAAAACTAAATGAATTTGCAGAGGTAGATGTGTCATTGAAGTCACTCAAGATTTCAGACAATGCACAAAACCAGCTTACCAATCTGGAGTCATGCATTCAAGATCTAGAAGAAGGACTAGAGAGCTTATTTAGGCAGTTGATCAAAAATAGAGCCTCCCTTCTCAACATCCTGAGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

278

Amino Acids

31.14

Weight (kDa)

8.47

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 274 1e-80 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 2 cut(s) 346, 474
AclWI GGATC 1 cut(s) 453
AcsI RAATTY 1 cut(s) 665
AcuI CTGAAG 3 cut(s) 114, 161, 461
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 7 cut(s) 56, 326, 527, 551, 586, 691, 752
AluBI AGCT 8 cut(s) 27, 238, 393, 514, 597, 638, 727, 777
AluI AGCT 8 cut(s) 27, 238, 393, 514, 597, 638, 727, 777
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 1 cut(s) 453
ApeKI GCWGC 3 cut(s) 40, 273, 594
ApoI RAATTY 1 cut(s) 665
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 2 cut(s) 365, 418
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 3 cut(s) 27, 285, 606
BccI CCATC 3 cut(s) 239, 397, 509
BclI TGATCA 1 cut(s) 792
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 4 cut(s) 591, 758, 770, 832
BglII AGATCT 1 cut(s) 754
BisI GCNGC 3 cut(s) 41, 274, 595
BlsI GCNGC 3 cut(s) 42, 275, 596
Bme1390I CCNGG 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 758
Bpu10I CCTNAGC 2 cut(s) 515, 824
BpuEI CTTGAG 2 cut(s) 409, 683
BpuMI CCSGG 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 453
Bse8I GATNNNNATC 1 cut(s) 500
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 4 cut(s) 101, 250, 526, 819
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 815
BseXI GCAGC 3 cut(s) 27, 285, 606
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 2 cut(s) 26, 641
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 395
BsiSI CCGG 2 cut(s) 37, 256
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 485
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 1 cut(s) 747
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 3 cut(s) 458, 754, 792
BspACI CCGC 2 cut(s) 346, 474
BspCNI CTCAG 1 cut(s) 816
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 3 cut(s) 458, 754, 792
BssT1I CCWWGG 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 475
BstAPI GCANNNNNTGC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 512
BstDEI CTNAG 3 cut(s) 134, 515, 824
BstF5I GGATG 4 cut(s) 101, 250, 526, 819
BstKTI GATC 3 cut(s) 461, 757, 795
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 3 cut(s) 458, 754, 792
BstMWI GCNNNNNNNGC 2 cut(s) 24, 151
BstSCI CCNGG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 27, 285, 606
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 458, 754
BstYI RGATCY 2 cut(s) 458, 754
BtsCI GGATG 4 cut(s) 101, 250, 526, 819
Cac8I GCNNGC 1 cut(s) 512
CseI GACGC 1 cut(s) 127
CviAII CATG 2 cut(s) 556, 744
DdeI CTNAG 3 cut(s) 134, 515, 824
DpnI GATC 3 cut(s) 460, 756, 794
DpnII GATC 3 cut(s) 458, 754, 792
Eam1104I CTCTTC 1 cut(s) 475
EarI CTCTTC 1 cut(s) 475
EciI GGCGGA 1 cut(s) 463
Ecl136II GAGCTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 3 cut(s) 114, 161, 461
EcoICRI GAGCTC 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 749
EcoT38I GRGCYC 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 2 cut(s) 559, 747
FaiI YATR 3 cut(s) 314, 557, 745
FalI AAGNNNNNCTT 4 cut(s) 138, 170, 622, 654
FaqI GGGAC 1 cut(s) 589
FatI CATG 2 cut(s) 555, 743
FauI CCCGC 1 cut(s) 339
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 3 cut(s) 41, 274, 595
FokI GGATG 4 cut(s) 88, 257, 533, 806
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 3 cut(s) 41, 274, 595
FspBI CTAG 4 cut(s) 591, 758, 770, 832
GluI GCNGC 3 cut(s) 41, 274, 595
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 758
HapII CCGG 2 cut(s) 37, 256
HgaI GACGC 1 cut(s) 127
Hin1II CATG 2 cut(s) 559, 747
HinfI GANTC 6 cut(s) 287, 299, 363, 531, 551, 740
HpaII CCGG 2 cut(s) 37, 256
HphI GGTGA 2 cut(s) 365, 418
Hpy188I TCNGA 5 cut(s) 94, 298, 399, 441, 709
Hpy188III TCNNGA 7 cut(s) 56, 379, 700, 737, 752, 758, 823
HpyAV CCTTC 5 cut(s) 332, 436, 521, 758, 821
HpyCH4V TGCA 9 cut(s) 43, 145, 184, 273, 312, 622, 671, 716, 747
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 151
HpyF3I CTNAG 3 cut(s) 134, 515, 824
Hsp92II CATG 2 cut(s) 559, 747
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 3 cut(s) 458, 754, 792
LpnPI CCDG 8 cut(s) 50, 155, 269, 364, 558, 583, 722, 737
Lsp1109I GCAGC 3 cut(s) 27, 285, 606
MaeI CTAG 4 cut(s) 591, 758, 770, 832
MaeIII GTNAC 2 cut(s) 532, 693
MalI GATC 3 cut(s) 460, 756, 794
MboI GATC 3 cut(s) 458, 754, 792
MboII GAAGA 9 cut(s) 81, 102, 167, 351, 412, 421, 462, 659, 773
MflI RGATCY 2 cut(s) 458, 754
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 1 cut(s) 665
MlyI GAGTC 3 cut(s) 357, 540, 749
MnlI CCTC 7 cut(s) 43, 57, 78, 344, 367, 667, 817
Mph1103I ATGCAT 1 cut(s) 749
MseI TTAA 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 597
MspI CCGG 2 cut(s) 37, 256
MspR9I CCNGG 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 747
MwoI GCNNNNNNNGC 2 cut(s) 24, 151
NciI CCSGG 1 cut(s) 37
NdeII GATC 3 cut(s) 458, 754, 792
NlaIII CATG 2 cut(s) 559, 747
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 532, 693
NsiI ATGCAT 1 cut(s) 749
PctI GAATGC 1 cut(s) 747
PfeI GAWTC 3 cut(s) 287, 299, 551
PkrI GCNGC 3 cut(s) 42, 275, 596
PleI GAGTC 3 cut(s) 357, 539, 748
PpsI GAGTC 3 cut(s) 357, 539, 748
Psp124BI GAGCTC 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 572
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 2 cut(s) 458, 754
PvuII CAGCTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 395
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 3 cut(s) 41, 274, 595
Sau3AI GATC 3 cut(s) 458, 754, 792
SchI GAGTC 3 cut(s) 357, 540, 749
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 388, 698
SmoI CTYRAG 2 cut(s) 388, 698
Sse9I AATT 1 cut(s) 665
SsiI CCGC 2 cut(s) 346, 474
SspMI CTAG 4 cut(s) 591, 758, 770, 832
SstI GAGCTC 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 303
TasI AATT 1 cut(s) 665
TfiI GAWTC 3 cut(s) 287, 299, 551
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TseFI GTSAC 2 cut(s) 532, 693
TseI GCWGC 3 cut(s) 40, 273, 594
Tsp45I GTSAC 2 cut(s) 532, 693
TspDTI ATGAA 3 cut(s) 102, 660, 678
XapI RAATTY 1 cut(s) 665
XbaI TCTAGA 1 cut(s) 757
XspI CTAG 4 cut(s) 591, 758, 770, 832
Zsp2I ATGCAT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.