Rroxscaffold_7G00188440

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000199
Physical Location & Seq
Reverse (-)
28015752 .. 28016575
824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188440.1

Sequence Viewer

Length: 729 bp
ATGGCTTGCCACACTCGCTCTAACAGCTTTCCATCAAGGTCACACCCCATCATTCAAGAAGTTGATGAACATCTGTTGCTTCAGTTGCCCCTCAACCAACAGGCCTTGGCACAAGAGAAGCATCATAAATGTGCTAATGAGCTATTAGATGGCTCCCTCAGGCTCCTGGATGTTTGTAGCACTGCCAAGGATGCCCTGTTGCAAACCACGGAATGCATGCAGAACCTTCAATCAATCATCCGAAGAAGAAGAGGAGAAGAATTTGAAGTACTCTCAAGTGAGATTAAGAAATACTTAACCTCCAGGAAGATGGTGAAAAAGGTAATCCACAAGGCTATTGGGAATCTGAAGGGAGTGAAAAACTCTTCTCTCAACAATGACCAAGAGACTATAGCCATTGTTAGCAAGCTGAGAGATATTGAAGCAGTCTCTTTCACTATCTTCGAATCAGTGCTGTCCTTCATCTCTGGACCAAAGTCAAAGCCTAGCAGCTGGTCTTTGGTTTCCAGGATGGTGCAGTCCAAAAGAGTAGCTTGTGATGAGGAAGCAAAAGTGAATGAGTTTGCAGAGGTGGATGCTGCATTGAAGTCACTCAAGAGTGCAGACAATGCACAAAACCAGCTTAGCAATCTGGAGTCATGCATTCAAGACCAAGAAGAAGGACTTGAGAGCCTATTTAGGCAATTGATCAAAACAAGGGTCTCCCTTCTCAACATCCTAAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

242

Amino Acids

27.21

Weight (kDa)

8.19

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 26 - 239 7.3e-76 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 2 cut(s) 65, 368
AfaI GTAC 1 cut(s) 270
AgsI TTSAA 6 cut(s) 56, 230, 266, 422, 586, 647
AjnI CCWGG 3 cut(s) 165, 302, 506
AluBI AGCT 6 cut(s) 27, 142, 409, 492, 533, 622
AluI AGCT 6 cut(s) 27, 142, 409, 492, 533, 622
Alw26I GTCTC 3 cut(s) 380, 433, 706
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 489, 578
ApoI RAATTY 1 cut(s) 260
ArsI GACNNNNNNTTYG 2 cut(s) 684, 716
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 1 cut(s) 325
AsuII TTCGAA 1 cut(s) 444
AvaII GGWCC 1 cut(s) 470
AxyI CCTNAGG 1 cut(s) 158
BbvI GCAGC 2 cut(s) 501, 565
BccI CCATC 5 cut(s) 40, 56, 143, 304, 505
BciT130I CCWGG 3 cut(s) 167, 304, 508
BclI TGATCA 1 cut(s) 687
BcoDI GTCTC 3 cut(s) 380, 433, 706
BfaI CTAG 2 cut(s) 486, 727
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 2 cut(s) 490, 579
BlpI GCTNAGC 1 cut(s) 623
BlsI GCNGC 2 cut(s) 491, 580
BmcAI AGTACT 1 cut(s) 270
Bme1390I CCNGG 3 cut(s) 167, 304, 508
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 2 cut(s) 154, 164
BmrFI CCNGG 3 cut(s) 167, 304, 508
BmsI GCATC 3 cut(s) 130, 181, 565
BoxI GACNNNNGTC 1 cut(s) 475
BpmI CTGGAG 2 cut(s) 286, 653
Bpu1102I GCTNAGC 1 cut(s) 623
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 3 cut(s) 259, 578, 686
BsaBI GATNNNNATC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 706
BsaJI CCNNGG 3 cut(s) 105, 186, 207
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bse21I CCTNAGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 3 cut(s) 167, 304, 508
BseDI CCNNGG 3 cut(s) 105, 186, 207
BseGI GGATG 6 cut(s) 175, 196, 237, 516, 580, 714
BseJI GATNNNNATC 1 cut(s) 69
BseMII CTCAG 2 cut(s) 172, 401
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 501, 565
BsgI GTGCAG 2 cut(s) 536, 621
BshFI GGCC 1 cut(s) 104
BsmAI GTCTC 3 cut(s) 380, 433, 706
BsmI GAATGC 2 cut(s) 218, 642
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 706
Bsp119I TTCGAA 1 cut(s) 444
Bsp143I GATC 1 cut(s) 687
Bsp1720I GCTNAGC 1 cut(s) 623
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 171, 402
BspLI GGNNCC 2 cut(s) 154, 164
BspT104I TTCGAA 1 cut(s) 444
BspTNI GGTCTC 1 cut(s) 706
BssECI CCNNGG 3 cut(s) 105, 186, 207
BssMI GATC 1 cut(s) 687
BssT1I CCWWGG 2 cut(s) 105, 186
Bst2UI CCWGG 3 cut(s) 167, 304, 508
Bst6I CTCTTC 2 cut(s) 244, 370
BstAPI GCANNNNNTGC 1 cut(s) 608
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 3 cut(s) 7, 218, 407
BstDEI CTNAG 3 cut(s) 158, 410, 623
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 6 cut(s) 175, 196, 237, 516, 580, 714
BstKTI GATC 1 cut(s) 690
BstMAI GTCTC 3 cut(s) 380, 433, 706
BstMBI GATC 1 cut(s) 687
BstMWI GCNNNNNNNGC 5 cut(s) 15, 24, 85, 191, 608
BstNI CCWGG 3 cut(s) 167, 304, 508
BstNSI RCATGY 1 cut(s) 220
BstPAI GACNNNNGTC 1 cut(s) 475
BstSCI CCNGG 3 cut(s) 165, 302, 506
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 501, 565
BstXI CCANNNNNNTGG 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 104
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 6 cut(s) 175, 196, 237, 516, 580, 714
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 180, 456
Cac8I GCNNGC 3 cut(s) 7, 218, 407
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 269
CviAII CATG 2 cut(s) 217, 639
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 3 cut(s) 158, 410, 623
DpnI GATC 1 cut(s) 689
DpnII GATC 1 cut(s) 687
Eam1104I CTCTTC 2 cut(s) 244, 370
EarI CTCTTC 2 cut(s) 244, 370
Eco130I CCWWGG 2 cut(s) 105, 186
Eco147I AGGCCT 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 470
Eco57I CTGAAG 2 cut(s) 65, 368
Eco81I CCTNAGG 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 165, 302, 506
EcoT14I CCWWGG 2 cut(s) 105, 186
EcoT22I ATGCAT 2 cut(s) 218, 644
ErhI CCWWGG 2 cut(s) 105, 186
FaeI CATG 2 cut(s) 220, 642
FaiI YATR 4 cut(s) 126, 218, 392, 640
FalI AAGNNNNNCTT 6 cut(s) 278, 310, 517, 549, 648, 680
FatI CATG 2 cut(s) 216, 638
FbaI TGATCA 1 cut(s) 687
Fnu4HI GCNGC 2 cut(s) 490, 579
FokI GGATG 6 cut(s) 182, 203, 224, 523, 587, 701
Fsp4HI GCNGC 2 cut(s) 490, 579
FspBI CTAG 2 cut(s) 486, 727
GluI GCNGC 2 cut(s) 490, 579
GsuI CTGGAG 2 cut(s) 286, 653
HaeIII GGCC 1 cut(s) 104
Hin1II CATG 2 cut(s) 220, 642
HinfI GANTC 3 cut(s) 343, 446, 635
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 242, 348
Hpy188III TCNNGA 5 cut(s) 56, 468, 595, 632, 647
HpyAV CCTTC 5 cut(s) 236, 343, 469, 653, 716
HpyCH4V TGCA 9 cut(s) 202, 216, 220, 517, 566, 581, 602, 611, 642
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 24, 85, 191, 608
HpyF3I CTNAG 3 cut(s) 158, 410, 623
Hsp92II CATG 2 cut(s) 220, 642
Ksp22I TGATCA 1 cut(s) 687
Kzo9I GATC 1 cut(s) 687
LmnI GCTCC 2 cut(s) 158, 168
Lsp1109I GCAGC 2 cut(s) 501, 565
LweI GCATC 3 cut(s) 130, 181, 565
MaeI CTAG 2 cut(s) 486, 727
MaeIII GTNAC 2 cut(s) 39, 588
MalI GATC 1 cut(s) 689
MboI GATC 1 cut(s) 687
MboII GAAGA 8 cut(s) 255, 258, 261, 269, 319, 357, 433, 668
MfeI CAATTG 1 cut(s) 683
MluCI AATT 2 cut(s) 260, 683
MlyI GAGTC 1 cut(s) 644
MnlI CCTC 6 cut(s) 101, 167, 245, 310, 535, 562
Mph1103I ATGCAT 2 cut(s) 218, 644
MseI TTAA 2 cut(s) 285, 296
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 492
MspR9I CCNGG 3 cut(s) 167, 304, 508
MunI CAATTG 1 cut(s) 683
Mva1269I GAATGC 2 cut(s) 218, 642
MvaI CCWGG 3 cut(s) 167, 304, 508
MwoI GCNNNNNNNGC 5 cut(s) 15, 24, 85, 191, 608
NdeII GATC 1 cut(s) 687
NlaIII CATG 2 cut(s) 220, 642
NlaIV GGNNCC 2 cut(s) 154, 164
NmuCI GTSAC 2 cut(s) 39, 588
NsiI ATGCAT 2 cut(s) 218, 644
NspI RCATGY 1 cut(s) 220
NspV TTCGAA 1 cut(s) 444
PaeI GCATGC 1 cut(s) 220
PceI AGGCCT 1 cut(s) 104
PctI GAATGC 2 cut(s) 218, 642
PfeI GAWTC 2 cut(s) 343, 446
PfoI TCCNGGA 3 cut(s) 165, 302, 506
PkrI GCNGC 2 cut(s) 491, 580
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PshAI GACNNNNGTC 1 cut(s) 475
Psp6I CCWGG 3 cut(s) 165, 302, 506
PspGI CCWGG 3 cut(s) 165, 302, 506
PspN4I GGNNCC 2 cut(s) 154, 164
PspPI GGNCC 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 492
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 2 cut(s) 285, 296
SatI GCNGC 2 cut(s) 490, 579
Sau3AI GATC 1 cut(s) 687
Sau96I GGNCC 1 cut(s) 470
ScaI AGTACT 1 cut(s) 270
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 3 cut(s) 167, 304, 508
SfaNI GCATC 3 cut(s) 130, 181, 565
SfcI CTRYAG 1 cut(s) 390
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 3 cut(s) 274, 593, 665
SmoI CTYRAG 3 cut(s) 274, 593, 665
SphI GCATGC 1 cut(s) 220
Sse9I AATT 2 cut(s) 260, 683
SseBI AGGCCT 1 cut(s) 104
SspMI CTAG 2 cut(s) 486, 727
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 3 cut(s) 165, 302, 506
StyI CCWWGG 2 cut(s) 105, 186
TaqI TCGA 1 cut(s) 444
TasI AATT 2 cut(s) 260, 683
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 2 cut(s) 343, 446
Tru1I TTAA 2 cut(s) 285, 296
Tru9I TTAA 2 cut(s) 285, 296
TscAI CASTG 2 cut(s) 187, 456
TseFI GTSAC 2 cut(s) 39, 588
TseI GCWGC 2 cut(s) 489, 578
Tsp45I GTSAC 2 cut(s) 39, 588
TspDTI ATGAA 2 cut(s) 81, 451
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 2 cut(s) 187, 456
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XspI CTAG 2 cut(s) 486, 727
ZrmI AGTACT 1 cut(s) 270
Zsp2I ATGCAT 2 cut(s) 218, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.