Rh6AG238300

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000199
Physical Location & Seq
Reverse (-)
42372959 .. 42373873
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG238300.1

Sequence Viewer

Length: 915 bp
ATGAGGAAAGAACTCATCAGTTTCAATTGTACATCAACTAAAAAGTCTTCTATCATCTCACAAATCACAAAAAAGAAATGGCTTACGACACTCGCTCTAACGTACAGCTTCCCCTCCAGGTCACACCCTCTCATTCAAGAAGTTGATGAACAATTGTGCAGATTGACGTCTTTCGAAGCCACCTCCACATCATCATCATCAATAAGTCACCAACTAAATTGTCTGCAAGACTTGCATGATTGTGTTGATATATTGCTTCAATTGCCACTCACCCAACAAGCCTTAGCCCAAGAGAAGCATGAAAAATGGGCTAATGAACTATTAGATGGCTCTCTCAGGCTCTTGGATATTTGCAGCACTGCCAAAGATGCCTTGTTGCCAACCAAGGAATGCATTCAGAACCTTCAGTCAATCGTCCGAAGAAGAGGAGGAGGAGAATCTGATGTACTCGCAAGTGAAGTTAGGAAATACTTAACCTCCAGGAAGATGGTGAAAGAGTCACTCCACAAGGCTATGGGGAATTTGAAGGAAATGGAAAACAAATCCAATTTCTATTCCCTCAACAAGGACCAAGAGACAATCGCCATTATTAGCAAGCTGAGAGAAGTTGAAGCAGTCACTCGAACAGTGTTTGAACCAATATTGTCCTTCATCTCTGGGCCAAAGGTATCAAGCAGCTGGTCATTTATATCCAAGATGATGCAGTCAAAAAGAGTAGCTTGTGAGGAAGAAGCAGAAGTAAACCAATTTGCAGAGGTGGATGTTGCATTGAAGTCACACAAGAGTTTAGACAATGCACAAAACCAGCTTAACAATCTGGAGTCATGCATCCAAGACCAAGAAGAAGGACTCGAGTGCCTGTTTAGGCAATTGATAAAAACAAGAGTCTCCCTACTCAACATCCTCAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

304

Amino Acids

34.44

Weight (kDa)

7.04

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 72 - 301 2.6e-84 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 3 cut(s) 31, 104, 447
AfiI CCNNNNNNNGG 1 cut(s) 565
AgsI TTSAA 7 cut(s) 25, 137, 260, 526, 611, 635, 772
AjnI CCWGG 2 cut(s) 116, 479
AluBI AGCT 5 cut(s) 108, 598, 678, 719, 808
AluI AGCT 5 cut(s) 108, 598, 678, 719, 808
Alw26I GTCTC 2 cut(s) 569, 892
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 1 cut(s) 659
ApeKI GCWGC 2 cut(s) 354, 675
ApoI RAATTY 1 cut(s) 520
Asp700I GAANNNNTTC 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 568, 659
AsuHPI GGTGA 3 cut(s) 200, 262, 502
AsuII TTCGAA 1 cut(s) 174
AvaI CYCGRG 1 cut(s) 851
AvaII GGWCC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 366, 687
BccI CCATC 2 cut(s) 320, 481
BciT130I CCWGG 2 cut(s) 118, 481
BcoDI GTCTC 2 cut(s) 569, 892
BfaI CTAG 1 cut(s) 913
BisI GCNGC 2 cut(s) 355, 676
BlsI GCNGC 2 cut(s) 356, 677
Bme1390I CCNGG 2 cut(s) 118, 481
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 2 cut(s) 568, 659
BmrFI CCNGG 2 cut(s) 118, 481
BmsI GCATC 3 cut(s) 358, 690, 837
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 3 cut(s) 100, 463, 839
Bpu10I CCTNAGC 1 cut(s) 283
Bpu14I TTCGAA 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 565
BseBI CCWGG 2 cut(s) 118, 481
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 3 cut(s) 766, 828, 900
BseLI CCNNNNNNNGG 1 cut(s) 565
BseMII CTCAG 2 cut(s) 349, 590
BseRI GAGGAG 3 cut(s) 441, 444, 447
BseXI GCAGC 2 cut(s) 366, 687
BsgI GTGCAG 1 cut(s) 178
BshFI GGCC 1 cut(s) 661
BsiHKCI CYCGRG 1 cut(s) 851
BslI CCNNNNNNNGG 1 cut(s) 565
BsmAI GTCTC 2 cut(s) 569, 892
BsmI GAATGC 2 cut(s) 393, 395
BsnI GGCC 1 cut(s) 661
BsoBI CYCGRG 1 cut(s) 851
Bsp119I TTCGAA 1 cut(s) 174
Bsp1407I TGTACA 1 cut(s) 29
BspANI GGCC 1 cut(s) 661
BspCNI CTCAG 2 cut(s) 348, 591
BspT104I TTCGAA 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 384
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 118, 481
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 1 cut(s) 418
BstACI GRCGYC 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 232
BstAUI TGTACA 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 596
BstDEI CTNAG 3 cut(s) 283, 335, 599
BstENI CCTNNNNNAGG 1 cut(s) 563
BstF5I GGATG 3 cut(s) 766, 828, 900
BstMAI GTCTC 2 cut(s) 569, 892
BstMWI GCNNNNNNNGC 3 cut(s) 232, 262, 368
BstNI CCWGG 2 cut(s) 118, 481
BstSCI CCNGG 2 cut(s) 116, 479
BstV1I GCAGC 2 cut(s) 366, 687
BstV2I GAAGAC 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 487
BsuRI GGCC 1 cut(s) 661
BtsCI GGATG 3 cut(s) 766, 828, 900
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 357, 633
Cac8I GCNNGC 1 cut(s) 596
Cfr13I GGNCC 2 cut(s) 568, 659
Csp6I GTAC 3 cut(s) 30, 103, 446
CviAII CATG 3 cut(s) 236, 299, 825
CviQI GTAC 3 cut(s) 30, 103, 446
DdeI CTNAG 3 cut(s) 283, 335, 599
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 851
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 116, 479
EcoT14I CCWWGG 1 cut(s) 384
EcoT22I ATGCAT 2 cut(s) 395, 830
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 3 cut(s) 239, 302, 828
FaiI YATR 6 cut(s) 237, 251, 300, 515, 689, 826
FalI AAGNNNNNCTT 2 cut(s) 703, 735
FatI CATG 3 cut(s) 235, 298, 824
Fnu4HI GCNGC 2 cut(s) 355, 676
FokI GGATG 3 cut(s) 773, 815, 887
Fsp4HI GCNGC 2 cut(s) 355, 676
FspBI CTAG 1 cut(s) 913
GluI GCNGC 2 cut(s) 355, 676
GsuI CTGGAG 3 cut(s) 100, 463, 839
HaeIII GGCC 1 cut(s) 661
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 3 cut(s) 239, 302, 828
HinfI GANTC 5 cut(s) 437, 497, 821, 849, 885
HphI GGTGA 3 cut(s) 200, 262, 502
Hpy166II GTNNAC 1 cut(s) 742
Hpy188I TCNGA 3 cut(s) 399, 419, 442
Hpy188III TCNNGA 2 cut(s) 137, 818
Hpy8I GTNNAC 1 cut(s) 742
HpyAV CCTTC 4 cut(s) 413, 520, 658, 839
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 2 cut(s) 101, 167
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 262, 368
HpyF3I CTNAG 3 cut(s) 283, 335, 599
HpySE526I ACGT 2 cut(s) 101, 167
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 3 cut(s) 239, 302, 828
Lsp1109I GCAGC 2 cut(s) 366, 687
LweI GCATC 3 cut(s) 358, 690, 837
MaeI CTAG 1 cut(s) 913
MaeII ACGT 2 cut(s) 101, 167
MaeIII GTNAC 5 cut(s) 120, 206, 498, 616, 774
MboII GAAGA 6 cut(s) 39, 432, 435, 496, 740, 854
MfeI CAATTG 4 cut(s) 25, 152, 260, 869
MluCI AATT 8 cut(s) 25, 152, 217, 260, 520, 547, 746, 869
MlyI GAGTC 4 cut(s) 506, 830, 843, 894
Mph1103I ATGCAT 2 cut(s) 395, 830
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 2 cut(s) 473, 810
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 678
MspR9I CCNGG 2 cut(s) 118, 481
MunI CAATTG 4 cut(s) 25, 152, 260, 869
Mva1269I GAATGC 2 cut(s) 393, 395
MvaI CCWGG 2 cut(s) 118, 481
MwoI GCNNNNNNNGC 3 cut(s) 232, 262, 368
NlaIII CATG 3 cut(s) 239, 302, 828
NmuCI GTSAC 5 cut(s) 120, 206, 498, 616, 774
NsiI ATGCAT 2 cut(s) 395, 830
NspV TTCGAA 1 cut(s) 174
PaeR7I CTCGAG 1 cut(s) 851
PctI GAATGC 2 cut(s) 393, 395
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 479
PkrI GCNGC 2 cut(s) 356, 677
PleI GAGTC 4 cut(s) 505, 829, 843, 893
PpsI GAGTC 4 cut(s) 505, 829, 843, 893
Psp6I CCWGG 2 cut(s) 116, 479
PspGI CCWGG 2 cut(s) 116, 479
PspPI GGNCC 2 cut(s) 568, 659
PspXI VCTCGAGB 1 cut(s) 851
PvuII CAGCTG 1 cut(s) 678
RsaI GTAC 3 cut(s) 31, 104, 447
RsaNI GTAC 3 cut(s) 30, 103, 446
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 2 cut(s) 473, 810
SatI GCNGC 2 cut(s) 355, 676
Sau96I GGNCC 2 cut(s) 568, 659
SchI GAGTC 4 cut(s) 506, 830, 843, 894
ScrFI CCNGG 2 cut(s) 118, 481
SfaNI GCATC 3 cut(s) 358, 690, 837
Sfr274I CTCGAG 1 cut(s) 851
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 1 cut(s) 568
SlaI CTCGAG 1 cut(s) 851
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 8 cut(s) 25, 152, 217, 260, 520, 547, 746, 869
SspI AATATT 1 cut(s) 642
SspMI CTAG 1 cut(s) 913
StyD4I CCNGG 2 cut(s) 116, 479
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 2 cut(s) 104, 170
TaqI TCGA 3 cut(s) 174, 622, 852
TasI AATT 8 cut(s) 25, 152, 217, 260, 520, 547, 746, 869
TatI WGTACW 2 cut(s) 29, 445
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 2 cut(s) 473, 810
Tru9I TTAA 2 cut(s) 473, 810
TscAI CASTG 2 cut(s) 364, 633
TseFI GTSAC 5 cut(s) 120, 206, 498, 616, 774
TseI GCWGC 2 cut(s) 354, 675
Tsp45I GTSAC 5 cut(s) 120, 206, 498, 616, 774
TspDTI ATGAA 4 cut(s) 162, 315, 330, 640
TspRI CASTG 2 cut(s) 364, 633
VpaK11BI GGWCC 1 cut(s) 568
XagI CCTNNNNNAGG 1 cut(s) 563
XapI RAATTY 1 cut(s) 520
XhoI CTCGAG 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 913
ZraI GACGTC 1 cut(s) 168
Zsp2I ATGCAT 2 cut(s) 395, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.