FvH4_2g16202

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Reverse (-)
14169380 .. 14170195
816 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16202.t1

Sequence Viewer

Length: 816 bp
ATGGCTTCTCACACTCGCTCTAACAGCTTCCCCTCCAGGGCACACCCTATCATTGAAGAAGCAAATGAACAATTGTGCAGATTAAGGTCGTCTGCAGCCACCACAACATCTTCATCATCAATCAGCCACAAACTAAGTGGTCTACAAGACTTGCATGAATGTGTTGAAAGGTTGCTTCAGTTGCCCCTCAATCAGCAAGCAACAGCGCAAAAGAAACATCAGAAATGCACTAATGAGCTATTAGATGGTTCTCTAAGGCTCTTGGATGTTTGTAGCACTGCCAAGGAAGCACTGCTGCAAACCAAGGCATGCTTACAGGATCTTCAATCTATTATAAGAAGACGAGGATGCGAATCTGGTGTACTTACGAGTGAGGTTAGGAAATACTTGACCTCCACGAAGATGGTGAAAAAGACGATCCAAAAGGCTATGGTCGATACCAGATCCACTTTCTCTTCCCTCAACAAGGAGACCGAATGTATTTCCATCGTTAACACATTGAGAAATGTAGAAGCAATTACTCTCTCAGTGTTTGAATCACTGTTCTCTTTCATCTCGGGGCCAAAGGCATCAACAAGCTGGTCATTGGTATCAAAGATGATGCGGTCAAAAAGAGTAGCTTGTGAGGAAGAAGCAGAGATAAATGAATTCGCAGAGGTGGATGCTGCACTGAAGTCAGTCAAGAGTGCAGACAATGTACAGAACCAGCTTAACAATCTGGAGTCATGCATCCAAGATCAAGAAGAAGGACTCGAGTGCCTATTTAGGCAATTGATCAAAACTAGAGTCTCGCTTCTCAACATCCTCAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

272

Amino Acids

30.22

Weight (kDa)

8.31

Isoelectric Point (pI)

66.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 268 8.1e-79 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AccI GTMKAC 1 cut(s) 142
AciI CCGC 1 cut(s) 604
AclWI GGATC 3 cut(s) 327, 412, 438
AcsI RAATTY 1 cut(s) 647
AcuI CTGAAG 2 cut(s) 161, 692
AfaI GTAC 2 cut(s) 363, 699
AfiI CCNNNNNNNGG 2 cut(s) 37, 466
AgsI TTSAA 4 cut(s) 56, 167, 326, 536
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 5 cut(s) 27, 238, 579, 620, 709
AluI AGCT 5 cut(s) 27, 238, 579, 620, 709
Alw26I GTCTC 2 cut(s) 464, 793
AlwI GGATC 3 cut(s) 327, 412, 438
Ama87I CYCGRG 2 cut(s) 556, 752
AoxI GGCC 1 cut(s) 560
ApeKI GCWGC 3 cut(s) 95, 295, 665
ApoI RAATTY 1 cut(s) 647
ArsI GACNNNNNNTTYG 2 cut(s) 771, 803
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 560
AsuHPI GGTGA 1 cut(s) 418
AvaI CYCGRG 2 cut(s) 556, 752
BaeGI GKGCMC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 346
BbvI GCAGC 3 cut(s) 107, 282, 652
BccI CCATC 3 cut(s) 239, 397, 494
BciT130I CCWGG 1 cut(s) 37
BclI TGATCA 1 cut(s) 774
BcoDI GTCTC 2 cut(s) 464, 793
BfaI CTAG 2 cut(s) 783, 814
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 3 cut(s) 96, 296, 666
BlsI GCNGC 3 cut(s) 97, 297, 667
Bme1390I CCNGG 1 cut(s) 37
BmeT110I CYCGRG 2 cut(s) 556, 752
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 5 cut(s) 338, 578, 591, 652, 738
BpiI GAAGAC 1 cut(s) 346
BpmI CTGGAG 2 cut(s) 19, 740
BsaBI GATNNNNATC 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 3 cut(s) 36, 282, 303
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 466
Bse8I GATNNNNATC 1 cut(s) 352
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 3 cut(s) 36, 282, 303
BseGI GGATG 5 cut(s) 271, 353, 667, 729, 801
BseJI GATNNNNATC 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 37, 466
BseMII CTCAG 1 cut(s) 540
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 3 cut(s) 107, 282, 652
BsgI GTGCAG 3 cut(s) 97, 651, 708
BshFI GGCC 1 cut(s) 562
BsiHKCI CYCGRG 2 cut(s) 556, 752
BslI CCNNNNNNNGG 2 cut(s) 37, 466
BsmAI GTCTC 2 cut(s) 464, 793
BsnI GGCC 1 cut(s) 562
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 2 cut(s) 556, 752
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 697
Bsp143I GATC 5 cut(s) 319, 417, 443, 736, 774
BspACI CCGC 1 cut(s) 604
BspANI GGCC 1 cut(s) 562
BspCNI CTCAG 1 cut(s) 539
BspLI GGNNCC 1 cut(s) 561
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 3 cut(s) 327, 412, 438
BspTNI GGTCTC 1 cut(s) 464
BsrGI TGTACA 1 cut(s) 697
BssECI CCNNGG 3 cut(s) 36, 282, 303
BssMI GATC 5 cut(s) 319, 417, 443, 736, 774
BssT1I CCWWGG 2 cut(s) 282, 303
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 543
Bst6I CTCTTC 1 cut(s) 460
BstAUI TGTACA 1 cut(s) 697
BstC8I GCNNGC 2 cut(s) 198, 310
BstDEI CTNAG 3 cut(s) 134, 254, 526
BstENI CCTNNNNNAGG 1 cut(s) 464
BstF5I GGATG 5 cut(s) 271, 353, 667, 729, 801
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 5 cut(s) 322, 420, 446, 739, 777
BstMAI GTCTC 2 cut(s) 464, 793
BstMBI GATC 5 cut(s) 319, 417, 443, 736, 774
BstMWI GCNNNNNNNGC 3 cut(s) 24, 181, 287
BstNI CCWGG 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 3 cut(s) 107, 282, 652
BstV2I GAAGAC 1 cut(s) 346
BstX2I RGATCY 2 cut(s) 319, 443
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 2 cut(s) 319, 443
BsuRI GGCC 1 cut(s) 562
BtsCI GGATG 5 cut(s) 271, 353, 667, 729, 801
BtsI GCAGTG 2 cut(s) 276, 290
BtsIMutI CAGTG 5 cut(s) 276, 290, 534, 539, 668
Cac8I GCNNGC 2 cut(s) 198, 310
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 560
Csp6I GTAC 2 cut(s) 362, 698
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 3 cut(s) 155, 309, 726
CviQI GTAC 2 cut(s) 362, 698
DdeI CTNAG 3 cut(s) 134, 254, 526
DpnI GATC 5 cut(s) 321, 419, 445, 738, 776
DpnII GATC 5 cut(s) 319, 417, 443, 736, 774
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
Eco130I CCWWGG 2 cut(s) 282, 303
Eco31I GGTCTC 1 cut(s) 464
Eco57I CTGAAG 2 cut(s) 161, 692
Eco88I CYCGRG 2 cut(s) 556, 752
EcoNI CCTNNNNNAGG 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 2 cut(s) 282, 303
EcoT22I ATGCAT 1 cut(s) 731
ErhI CCWWGG 2 cut(s) 282, 303
FaeI CATG 3 cut(s) 158, 312, 729
FaiI YATR 5 cut(s) 156, 310, 335, 431, 727
FalI AAGNNNNNCTT 4 cut(s) 296, 328, 604, 636
FatI CATG 3 cut(s) 154, 308, 725
FbaI TGATCA 1 cut(s) 774
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 96, 296, 666
FokI GGATG 5 cut(s) 278, 360, 674, 716, 788
Fsp4HI GCNGC 3 cut(s) 96, 296, 666
FspBI CTAG 2 cut(s) 783, 814
GlaI GCGC 1 cut(s) 207
GluI GCNGC 3 cut(s) 96, 296, 666
GsuI CTGGAG 2 cut(s) 19, 740
HaeIII GGCC 1 cut(s) 562
HhaI GCGC 1 cut(s) 208
Hin1II CATG 3 cut(s) 158, 312, 729
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 5 cut(s) 353, 536, 722, 750, 786
HpaI GTTAAC 1 cut(s) 493
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 3 cut(s) 143, 362, 493
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 3 cut(s) 682, 719, 740
Hpy8I GTNNAC 3 cut(s) 143, 362, 493
HpyAV CCTTC 1 cut(s) 740
HpyCH4III ACNGT 1 cut(s) 543
HpyCH4V TGCA 8 cut(s) 78, 95, 154, 228, 298, 668, 689, 729
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 181, 287
HpyF3I CTNAG 3 cut(s) 134, 254, 526
Hsp92II CATG 3 cut(s) 158, 312, 729
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 774
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 5 cut(s) 319, 417, 443, 736, 774
LpnPI CCDG 8 cut(s) 22, 49, 302, 342, 454, 565, 704, 719
Lsp1109I GCAGC 3 cut(s) 107, 282, 652
LweI GCATC 5 cut(s) 338, 578, 591, 652, 738
MaeI CTAG 2 cut(s) 783, 814
MalI GATC 5 cut(s) 321, 419, 445, 738, 776
MboI GATC 5 cut(s) 319, 417, 443, 736, 774
MboII GAAGA 8 cut(s) 68, 102, 314, 351, 412, 447, 641, 755
MfeI CAATTG 2 cut(s) 71, 770
MflI RGATCY 2 cut(s) 319, 443
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 4 cut(s) 71, 516, 647, 770
MlyI GAGTC 3 cut(s) 731, 744, 795
MnlI CCTC 9 cut(s) 43, 197, 338, 367, 403, 470, 619, 649, 815
Mph1103I ATGCAT 1 cut(s) 731
MseI TTAA 3 cut(s) 83, 492, 711
MslI CAYNNNNRTG 2 cut(s) 159, 401
MspR9I CCNGG 1 cut(s) 37
MunI CAATTG 2 cut(s) 71, 770
MvaI CCWGG 1 cut(s) 37
MwoI GCNNNNNNNGC 3 cut(s) 24, 181, 287
NdeII GATC 5 cut(s) 319, 417, 443, 736, 774
NlaIII CATG 3 cut(s) 158, 312, 729
NlaIV GGNNCC 1 cut(s) 561
NsiI ATGCAT 1 cut(s) 731
NspI RCATGY 1 cut(s) 312
PaeI GCATGC 1 cut(s) 312
PaeR7I CTCGAG 1 cut(s) 752
PfeI GAWTC 2 cut(s) 353, 536
PkrI GCNGC 3 cut(s) 97, 297, 667
PleI GAGTC 3 cut(s) 730, 744, 794
PpsI GAGTC 3 cut(s) 730, 744, 794
PsiI TTATAA 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 1 cut(s) 560
PspXI VCTCGAGB 1 cut(s) 752
PstI CTGCAG 1 cut(s) 97
PsuI RGATCY 2 cut(s) 319, 443
RsaI GTAC 2 cut(s) 363, 699
RsaNI GTAC 2 cut(s) 362, 698
RseI CAYNNNNRTG 2 cut(s) 159, 401
SaqAI TTAA 3 cut(s) 83, 492, 711
SatI GCNGC 3 cut(s) 96, 296, 666
Sau3AI GATC 5 cut(s) 319, 417, 443, 736, 774
Sau96I GGNCC 1 cut(s) 560
SchI GAGTC 3 cut(s) 731, 744, 795
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 5 cut(s) 338, 578, 591, 652, 738
SfcI CTRYAG 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 752
SlaI CTCGAG 1 cut(s) 752
SmiMI CAYNNNNRTG 2 cut(s) 159, 401
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
SphI GCATGC 1 cut(s) 312
Sse9I AATT 4 cut(s) 71, 516, 647, 770
SsiI CCGC 1 cut(s) 604
SspMI CTAG 2 cut(s) 783, 814
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 2 cut(s) 282, 303
TaaI ACNGT 1 cut(s) 543
TaqI TCGA 2 cut(s) 435, 753
TaqII GACCGA 1 cut(s) 488
TasI AATT 4 cut(s) 71, 516, 647, 770
TatI WGTACW 2 cut(s) 361, 697
TfiI GAWTC 2 cut(s) 353, 536
Tru1I TTAA 3 cut(s) 83, 492, 711
Tru9I TTAA 3 cut(s) 83, 492, 711
TscAI CASTG 5 cut(s) 283, 297, 534, 546, 675
TseI GCWGC 3 cut(s) 95, 295, 665
TspDTI ATGAA 5 cut(s) 81, 102, 171, 541, 660
TspRI CASTG 5 cut(s) 283, 297, 534, 546, 675
XagI CCTNNNNNAGG 1 cut(s) 464
XapI RAATTY 1 cut(s) 647
XceI RCATGY 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 142
XspI CTAG 2 cut(s) 783, 814
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.