Rh6BG241900

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000199
Physical Location & Seq
Reverse (-)
45017019 .. 45025756
8738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG241900.1

Sequence Viewer

Length: 270 bp
ATGGGGTTTTTGAATACAAATTACATGGCTGAGCGGCTCTTGGATATTTGCAGCACTGCCAACGATGCCTTGTTGCTAACCAAGGAATGCATTCATAACCTTCAGTCAATCGTTCGAAGAAGAGGAGGAGGAGAATCTGATGTACTCGCAAGTGAAGTCAAGAAATACTTAACCTCCAGGAAGATGGTGAAAAAATCACTCCACAAGGCTATGGGGAATTTGAAGGAAATGGAAAAAAAATCCAATTTCTCTTCCCTCAACAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

89

Amino Acids

10.05

Weight (kDa)

9.55

Isoelectric Point (pI)

57.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 12 - 89 4.7e-24 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 34
AciI CCGC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 13, 223
AjnI CCWGG 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 115
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 178
BisI GCNGC 2 cut(s) 35, 52
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 2 cut(s) 36, 53
Bme1390I CCNGG 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 160
Bpu1102I GCTNAGC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 21
BseRI GAGGAG 3 cut(s) 138, 141, 144
BseXI GCAGC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 262
BsmI GAATGC 2 cut(s) 90, 92
Bsp119I TTCGAA 1 cut(s) 115
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 22
BspT104I TTCGAA 1 cut(s) 115
BsrBI CCGCTC 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 178
Bst6I CTCTTC 2 cut(s) 115, 256
BstBI TTCGAA 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 260
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
Csp6I GTAC 1 cut(s) 143
CviAII CATG 1 cut(s) 25
CviJI RGCY 3 cut(s) 29, 37, 209
CviKI_1 RGCY 3 cut(s) 29, 37, 209
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 115, 256
EarI CTCTTC 2 cut(s) 115, 256
Eco130I CCWWGG 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 96, 212
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 35, 52
Fsp4HI GCNGC 2 cut(s) 35, 52
GluI GCNGC 2 cut(s) 35, 52
GsuI CTGGAG 1 cut(s) 160
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 134
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 110, 217
HpyCH4V TGCA 2 cut(s) 51, 90
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 28
LpnPI CCDG 2 cut(s) 163, 190
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 55
MbiI CCGCTC 1 cut(s) 34
MboII GAAGA 4 cut(s) 129, 132, 193, 243
MluCI AATT 3 cut(s) 19, 217, 244
MnlI CCTC 5 cut(s) 116, 119, 122, 184, 266
Mph1103I ATGCAT 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 178
Mva1269I GAATGC 2 cut(s) 90, 92
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 65
NlaIII CATG 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 92
NspV TTCGAA 1 cut(s) 115
PctI GAATGC 2 cut(s) 90, 92
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 176
PkrI GCNGC 2 cut(s) 36, 53
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 2 cut(s) 35, 52
ScrFI CCNGG 1 cut(s) 178
SetI ASST 2 cut(s) 102, 176
SfaNI GCATC 1 cut(s) 55
SfuI TTCGAA 1 cut(s) 115
Sse9I AATT 3 cut(s) 19, 217, 244
SsiI CCGC 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 176
StyI CCWWGG 1 cut(s) 81
TaqI TCGA 1 cut(s) 115
TasI AATT 3 cut(s) 19, 217, 244
TatI WGTACW 1 cut(s) 142
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 61
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.