MD05G1130700.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000199
Physical Location & Seq
Reverse (-)
25574940 .. 25575752
813 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1130700.v1.1.491

Sequence Viewer

Length: 813 bp
ATGGCATTCCACACTCGATCTAACAGCTTCCCGTCAAGGCCACACCCGATCGTTGAAGAAGTTTATGAACTTTTGTGCAGATTGAGGTCTTCTGAATCCACCTCCACATCTTCTTCATCAATCAGCCACAAGCTAAGTAACCTCAAAGACTTGCATGATTGTGTTGAGAAGTTGCTTCAGTTGCCCCTCACCCAACAATCATTAGCCCAAGAGCAGAATGAGAGATGGACTAATGAGTTATTAGATGGCTCTATCAGACTCTTGGATGTTTGTGCCACTGTCAAGGATACCCTGTCGCAAAGCAAGGAATGCGTGCAAGATCTTCAATCCATCATCAGAAGGCGGGGAGGTGAATCTGCACTCACAAGTGAGGTCACAAAATACTTAACCTCCAGGAAGCTGGTGAAGAAAGCAATCCACAAGGCTATGGTAAATCTGAAGGGGATGAAAAATAGATCAGCATTCTCTTCCCCCAACAAGGACGAGGAGACAATTTCCATCTTTAGCAAGTTGAGAGACGTTGAAGCAGTCACTCGCGAAGTATTTGAATCGCTAATGTCATTCATCTCAGGGCCAAAATCACGGTCATTGGTCTCAAAGATGATGCAGTCAAAAAGAGCGGCTTGTGAGACAGAAACAGAAGTGAATGAATTTTCACAGGTGGATGCTGCACTACACAAAAGTGCCGATAACGCGCAAAACCAGCTTGAGAAGCTAGAGTCGTGCATTCAAGATCAGGAAGAAGGGCTTGAGTGCCTATTTAGACAGTTGATCAAAACAAGAGTCTCCCTCCTCAACATCCTGAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

271

Amino Acids

30.52

Weight (kDa)

7.62

Isoelectric Point (pI)

67.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 267 1.6e-83 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 620
AccII CGCG 2 cut(s) 537, 695
AciI CCGC 2 cut(s) 343, 620
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 2 cut(s) 161, 458
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 5 cut(s) 56, 326, 524, 548, 731
AjnI CCWGG 1 cut(s) 392
AleI CACNNNNGTG 1 cut(s) 681
AluBI AGCT 5 cut(s) 27, 133, 400, 706, 715
AluI AGCT 5 cut(s) 27, 133, 400, 706, 715
Alw26I GTCTC 5 cut(s) 482, 510, 598, 623, 790
AoxI GGCC 2 cut(s) 38, 572
ApeKI GCWGC 1 cut(s) 668
ApoI RAATTY 1 cut(s) 650
ArsI GACNNNNNNTTYG 4 cut(s) 569, 601, 768, 800
AspLEI GCGC 1 cut(s) 697
AspS9I GGNCC 1 cut(s) 572
AsuHPI GGTGA 3 cut(s) 181, 362, 415
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 655
BccI CCATC 4 cut(s) 219, 239, 338, 506
BciT130I CCWGG 1 cut(s) 394
BciVI GTATCC 1 cut(s) 280
BclI TGATCA 1 cut(s) 771
BcoDI GTCTC 5 cut(s) 482, 510, 598, 623, 790
BfaI CTAG 2 cut(s) 716, 811
BfuI GTATCC 1 cut(s) 280
BglII AGATCT 1 cut(s) 319
BisI GCNGC 2 cut(s) 621, 669
BlsI GCNGC 2 cut(s) 622, 670
Bme1390I CCNGG 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 572
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 2 cut(s) 594, 655
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 774, 806
BpmI CTGGAG 1 cut(s) 376
BpuEI CTTGAG 2 cut(s) 728, 770
BsaI GGTCTC 1 cut(s) 598
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 478
BseBI CCWGG 1 cut(s) 394
BseGI GGATG 4 cut(s) 271, 450, 670, 798
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 582
BseRI GAGGAG 2 cut(s) 500, 782
BseXI GCAGC 1 cut(s) 655
BsgI GTGCAG 3 cut(s) 97, 342, 654
Bsh1236I CGCG 2 cut(s) 537, 695
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 40, 574
BsiEI CGRYCG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 5 cut(s) 482, 510, 598, 623, 790
BsmBI CGTCTC 1 cut(s) 510
BsmI GAATGC 4 cut(s) 5, 314, 461, 726
BsnI GGCC 2 cut(s) 40, 574
Bso31I GGTCTC 1 cut(s) 598
Bsp143I GATC 6 cut(s) 17, 48, 319, 455, 733, 771
Bsp68I TCGCGA 1 cut(s) 537
BspACI CCGC 2 cut(s) 343, 620
BspANI GGCC 2 cut(s) 40, 574
BspCNI CTCAG 1 cut(s) 581
BspFNI CGCG 2 cut(s) 537, 695
BspTNI GGTCTC 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 620
BssMI GATC 6 cut(s) 17, 48, 319, 455, 733, 771
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 3 cut(s) 280, 585, 768
Bst6I CTCTTC 1 cut(s) 472
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 2 cut(s) 134, 568
BstF5I GGATG 4 cut(s) 271, 450, 670, 798
BstFNI CGCG 2 cut(s) 537, 695
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 6 cut(s) 20, 51, 322, 458, 736, 774
BstMAI GTCTC 5 cut(s) 482, 510, 598, 623, 790
BstMBI GATC 6 cut(s) 17, 48, 319, 455, 733, 771
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 5 cut(s) 181, 309, 692, 703, 712
BstNI CCWGG 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 392
BstUI CGCG 2 cut(s) 537, 695
BstV1I GCAGC 1 cut(s) 655
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 400
BstYI RGATCY 1 cut(s) 319
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 40, 574
BtsCI GGATG 4 cut(s) 271, 450, 670, 798
BtsIMutI CAGTG 1 cut(s) 276
BtuMI TCGCGA 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 314
CfoI GCGC 1 cut(s) 697
Cfr13I GGNCC 1 cut(s) 572
CviAII CATG 1 cut(s) 155
DdeI CTNAG 2 cut(s) 134, 568
DpnI GATC 6 cut(s) 19, 50, 321, 457, 735, 773
DpnII GATC 6 cut(s) 17, 48, 319, 455, 733, 771
Eam1104I CTCTTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 472
Eco31I GGTCTC 1 cut(s) 598
Eco57I CTGAAG 2 cut(s) 161, 458
EcoRII CCWGG 1 cut(s) 392
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 1 cut(s) 158
FaiI YATR 3 cut(s) 66, 156, 428
FalI AAGNNNNNCTT 4 cut(s) 607, 639, 732, 764
FatI CATG 1 cut(s) 154
FauI CCCGC 1 cut(s) 336
FbaI TGATCA 1 cut(s) 771
Fnu4HI GCNGC 2 cut(s) 621, 669
FokI GGATG 4 cut(s) 278, 457, 677, 785
Fsp4HI GCNGC 2 cut(s) 621, 669
FspBI CTAG 2 cut(s) 716, 811
GlaI GCGC 1 cut(s) 696
GluI GCNGC 2 cut(s) 621, 669
GsuI CTGGAG 1 cut(s) 376
HaeIII GGCC 2 cut(s) 40, 574
HhaI GCGC 1 cut(s) 697
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HinfI GANTC 6 cut(s) 95, 258, 353, 548, 719, 783
HphI GGTGA 3 cut(s) 181, 362, 415
Hpy188I TCNGA 4 cut(s) 94, 257, 338, 438
Hpy188III TCNNGA 4 cut(s) 536, 731, 737, 802
HpyAV CCTTC 3 cut(s) 333, 433, 737
HpyCH4III ACNGT 3 cut(s) 280, 585, 768
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 7 cut(s) 78, 154, 316, 359, 607, 671, 726
HpyF10VI GCNNNNNNNGC 5 cut(s) 181, 309, 692, 703, 712
HpyF3I CTNAG 2 cut(s) 134, 568
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 695
Ksp22I TGATCA 1 cut(s) 771
Kzo9I GATC 6 cut(s) 17, 48, 319, 455, 733, 771
LpnPI CCDG 8 cut(s) 305, 379, 386, 406, 555, 644, 716, 722
Lsp1109I GCAGC 1 cut(s) 655
LweI GCATC 2 cut(s) 594, 655
MaeI CTAG 2 cut(s) 716, 811
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 3 cut(s) 137, 373, 529
MalI GATC 6 cut(s) 19, 50, 321, 457, 735, 773
MbiI CCGCTC 1 cut(s) 620
MboI GATC 6 cut(s) 17, 48, 319, 455, 733, 771
MboII GAAGA 8 cut(s) 68, 81, 102, 105, 314, 418, 459, 752
MflI RGATCY 1 cut(s) 319
MluCI AATT 2 cut(s) 492, 650
MlyI GAGTC 3 cut(s) 252, 728, 792
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 2 cut(s) 159, 681
MspR9I CCNGG 1 cut(s) 394
Mva1269I GAATGC 4 cut(s) 5, 314, 461, 726
MvaI CCWGG 1 cut(s) 394
MvnI CGCG 2 cut(s) 537, 695
MwoI GCNNNNNNNGC 5 cut(s) 181, 309, 692, 703, 712
NdeII GATC 6 cut(s) 17, 48, 319, 455, 733, 771
NlaIII CATG 1 cut(s) 158
NmuCI GTSAC 2 cut(s) 373, 529
NruI TCGCGA 1 cut(s) 537
OliI CACNNNNGTG 1 cut(s) 681
PctI GAATGC 4 cut(s) 5, 314, 461, 726
PfeI GAWTC 3 cut(s) 95, 353, 548
PfoI TCCNGGA 1 cut(s) 392
PkrI GCNGC 2 cut(s) 622, 670
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 3 cut(s) 252, 727, 791
PpsI GAGTC 3 cut(s) 252, 727, 791
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspPI GGNCC 1 cut(s) 572
PsuI RGATCY 1 cut(s) 319
PvuI CGATCG 1 cut(s) 51
RruI TCGCGA 1 cut(s) 537
RseI CAYNNNNRTG 2 cut(s) 159, 681
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 621, 669
Sau3AI GATC 6 cut(s) 17, 48, 319, 455, 733, 771
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 3 cut(s) 252, 728, 792
ScrFI CCNGG 1 cut(s) 394
SfaNI GCATC 2 cut(s) 594, 655
SmiMI CAYNNNNRTG 2 cut(s) 159, 681
SmlI CTYRAG 2 cut(s) 707, 749
SmoI CTYRAG 2 cut(s) 707, 749
Sse9I AATT 2 cut(s) 492, 650
SsiI CCGC 2 cut(s) 343, 620
SspMI CTAG 2 cut(s) 716, 811
StyD4I CCNGG 1 cut(s) 392
TaaI ACNGT 3 cut(s) 280, 585, 768
TaiI ACGT 1 cut(s) 522
TaqI TCGA 1 cut(s) 16
TasI AATT 2 cut(s) 492, 650
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 3 cut(s) 95, 353, 548
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 2 cut(s) 373, 529
TseI GCWGC 1 cut(s) 668
Tsp45I GTSAC 2 cut(s) 373, 529
TspDTI ATGAA 5 cut(s) 81, 105, 461, 553, 663
TspRI CASTG 1 cut(s) 283
XapI RAATTY 1 cut(s) 650
XspI CTAG 2 cut(s) 716, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.