RLG00000013107

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000199
Physical Location & Seq
Forward (+)
26272798 .. 26273634
837 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013107

Sequence Viewer

Length: 741 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCCTCCAGGCCACACCCTCTTTTCCAAGAAGTTGATGAACATTTGATGCTTCAATTGCCACTCACCCAACAATCCCTAGCCCAAGAGAAGCATGAGAACATGGTTACAGAGCTATTAGAAGGATCTCTCAGTCTCTTAGATGTTTGTAGCACTGCTATGGCTGCCCTGTCGCAAACCAGGGTCCGCACGCAAGATCTTCAATCTATCATTCGAAGAAGGCGTGCAGAAGAACCTGGAGTACTAACAACCGAGGTTAGGAAATACTTAACCTCCAGGAAGACGATTAAAAAGGTACTCCACAAGGCTTTGGAGAACCTGAAGGCAACAGCAAACAGATCCATTTTCTCTTCCGTCCACAAGGACCAAGACACTATCGCCATTGTTAGAAAGTTGAGAGACGTTGAAGCAGTCACAGTCACCGTGTTTGCATCAGTGCTGTCCTTCATCTCTGGGCCAAAGCCCAAGCCTAGCAGCTGGTCATTGGTTTCCAAGATAGTACAATCAAAGAAAGTAGCTTGTGAGGAAGAAGCAAAAGTAAATGAATTTGCAGACGTGGATGCTGCATTAAAGTCACTCAAGAGTGCAGAGAATGCACAGAACCAGCTTAACAATCTGGAGTCGTGCATTCAAGACCTAGAAGAAGGACTCGAGTGCCTATTTAGGAACTTAATCAAAACTAGAGTCTCCCTTCTCAACATCCTAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

247

Amino Acids

27.65

Weight (kDa)

9.01

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 26 - 243 4.5e-76 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 214
AclWI GGATC 2 cut(s) 160, 360
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 3 cut(s) 270, 324, 528
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 4 cut(s) 83, 230, 434, 659
AjiI CACGTC 1 cut(s) 583
AjnI CCWGG 4 cut(s) 35, 206, 262, 302
AluBI AGCT 5 cut(s) 27, 142, 504, 545, 634
AluI AGCT 5 cut(s) 27, 142, 504, 545, 634
Alw26I GTCTC 3 cut(s) 167, 420, 718
AlwI GGATC 2 cut(s) 160, 360
Ama87I CYCGRG 1 cut(s) 677
AoxI GGCC 2 cut(s) 38, 482
ApeKI GCWGC 3 cut(s) 191, 501, 590
ApoI RAATTY 1 cut(s) 572
ArsI GACNNNNNNTTYG 2 cut(s) 696, 728
AspS9I GGNCC 3 cut(s) 211, 391, 482
AsuHPI GGTGA 2 cut(s) 85, 439
AsuII TTCGAA 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 2 cut(s) 211, 391
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 3 cut(s) 178, 513, 577
BciT130I CCWGG 4 cut(s) 37, 208, 264, 304
BcoDI GTCTC 3 cut(s) 167, 420, 718
BfaI CTAG 4 cut(s) 107, 498, 665, 708
BglII AGATCT 1 cut(s) 223
BisI GCNGC 3 cut(s) 192, 502, 591
BlsI GCNGC 3 cut(s) 193, 503, 592
BmcAI AGTACT 1 cut(s) 270
Bme1390I CCNGG 4 cut(s) 37, 208, 264, 304
Bme18I GGWCC 2 cut(s) 211, 391
BmeT110I CYCGRG 1 cut(s) 677
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 3 cut(s) 211, 391, 482
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 4 cut(s) 37, 208, 264, 304
BmsI GCATC 3 cut(s) 66, 467, 577
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 4 cut(s) 19, 285, 286, 665
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 590
BsaJI CCNNGG 2 cut(s) 207, 279
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseBI CCWGG 4 cut(s) 37, 208, 264, 304
BseDI CCNNGG 2 cut(s) 207, 279
BseGI GGATG 2 cut(s) 592, 726
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 172
BseXI GCAGC 3 cut(s) 178, 513, 577
BsgI GTGCAG 2 cut(s) 273, 633
BshFI GGCC 2 cut(s) 40, 484
BsiHKCI CYCGRG 1 cut(s) 677
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 3 cut(s) 167, 420, 718
BsmBI CGTCTC 1 cut(s) 420
BsmI GAATGC 2 cut(s) 625, 654
BsnI GGCC 2 cut(s) 40, 484
BsoBI CYCGRG 1 cut(s) 677
Bsp119I TTCGAA 1 cut(s) 241
Bsp143I GATC 3 cut(s) 152, 223, 365
BspACI CCGC 1 cut(s) 214
BspANI GGCC 2 cut(s) 40, 484
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 212
BspPI GGATC 2 cut(s) 160, 360
BspT104I TTCGAA 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 207, 279
BssMI GATC 3 cut(s) 152, 223, 365
Bst2UI CCWGG 4 cut(s) 37, 208, 264, 304
Bst4CI ACNGT 2 cut(s) 445, 451
Bst6I CTCTTC 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 218, 252
BstDEI CTNAG 2 cut(s) 158, 166
BstF5I GGATG 2 cut(s) 592, 726
BstKTI GATC 3 cut(s) 155, 226, 368
BstMAI GTCTC 3 cut(s) 167, 420, 718
BstMBI GATC 3 cut(s) 152, 223, 365
BstMWI GCNNNNNNNGC 4 cut(s) 24, 85, 191, 620
BstNI CCWGG 4 cut(s) 37, 208, 264, 304
BstSCI CCNGG 4 cut(s) 35, 206, 262, 302
BstV1I GCAGC 3 cut(s) 178, 513, 577
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 3 cut(s) 152, 223, 365
BstYI RGATCY 3 cut(s) 152, 223, 365
BsuRI GGCC 2 cut(s) 40, 484
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 2 cut(s) 592, 726
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 180, 468
Cac8I GCNNGC 2 cut(s) 218, 252
Cfr13I GGNCC 3 cut(s) 211, 391, 482
Csp6I GTAC 3 cut(s) 269, 323, 527
CviAII CATG 2 cut(s) 122, 130
CviQI GTAC 3 cut(s) 269, 323, 527
DdeI CTNAG 2 cut(s) 158, 166
DpnI GATC 3 cut(s) 154, 225, 367
DpnII GATC 3 cut(s) 152, 223, 365
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 211, 391
Eco57I CTGAAG 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 677
EcoRII CCWGG 4 cut(s) 35, 206, 262, 302
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 2 cut(s) 125, 133
FaiI YATR 3 cut(s) 123, 131, 188
FatI CATG 2 cut(s) 121, 129
Fnu4HI GCNGC 3 cut(s) 192, 502, 591
FokI GGATG 2 cut(s) 599, 713
Fsp4HI GCNGC 3 cut(s) 192, 502, 591
FspBI CTAG 4 cut(s) 107, 498, 665, 708
GluI GCNGC 3 cut(s) 192, 502, 591
GsuI CTGGAG 4 cut(s) 19, 285, 286, 665
HaeIII GGCC 2 cut(s) 40, 484
Hin1II CATG 2 cut(s) 125, 133
HinfI GANTC 3 cut(s) 647, 675, 711
HphI GGTGA 2 cut(s) 85, 439
Hpy166II GTNNAC 1 cut(s) 385
Hpy188III TCNNGA 3 cut(s) 607, 644, 659
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 6 cut(s) 143, 240, 343, 481, 665, 728
HpyCH4III ACNGT 2 cut(s) 445, 451
HpyCH4IV ACGT 2 cut(s) 429, 582
HpyCH4V TGCA 7 cut(s) 254, 458, 578, 593, 614, 623, 654
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 85, 191, 620
HpyF3I CTNAG 2 cut(s) 158, 166
HpySE526I ACGT 2 cut(s) 429, 582
Hsp92II CATG 2 cut(s) 125, 133
Kzo9I GATC 3 cut(s) 152, 223, 365
Lsp1109I GCAGC 3 cut(s) 178, 513, 577
LweI GCATC 3 cut(s) 66, 467, 577
MaeI CTAG 4 cut(s) 107, 498, 665, 708
MaeII ACGT 2 cut(s) 429, 582
MaeIII GTNAC 4 cut(s) 133, 439, 445, 600
MalI GATC 3 cut(s) 154, 225, 367
MboI GATC 3 cut(s) 152, 223, 365
MboII GAAGA 7 cut(s) 218, 255, 269, 319, 369, 566, 680
MfeI CAATTG 1 cut(s) 83
MflI RGATCY 3 cut(s) 152, 223, 365
MluCI AATT 2 cut(s) 83, 572
MlyI GAGTC 3 cut(s) 656, 669, 720
MnlI CCTC 5 cut(s) 43, 57, 274, 310, 544
MseI TTAA 5 cut(s) 296, 315, 596, 636, 698
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 504
MspR9I CCNGG 4 cut(s) 37, 208, 264, 304
MunI CAATTG 1 cut(s) 83
Mva1269I GAATGC 2 cut(s) 625, 654
MvaI CCWGG 4 cut(s) 37, 208, 264, 304
MwoI GCNNNNNNNGC 4 cut(s) 24, 85, 191, 620
NdeII GATC 3 cut(s) 152, 223, 365
NlaIII CATG 2 cut(s) 125, 133
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 3 cut(s) 439, 445, 600
NspV TTCGAA 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 677
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PctI GAATGC 2 cut(s) 625, 654
PfoI TCCNGGA 1 cut(s) 302
PkrI GCNGC 3 cut(s) 193, 503, 592
PleI GAGTC 3 cut(s) 655, 669, 719
PpsI GAGTC 3 cut(s) 655, 669, 719
Psp6I CCWGG 4 cut(s) 35, 206, 262, 302
PspGI CCWGG 4 cut(s) 35, 206, 262, 302
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 3 cut(s) 211, 391, 482
PspXI VCTCGAGB 1 cut(s) 677
PsrI GAACNNNNNNTAC 2 cut(s) 252, 284
PsuI RGATCY 3 cut(s) 152, 223, 365
PvuII CAGCTG 1 cut(s) 504
RsaI GTAC 3 cut(s) 270, 324, 528
RsaNI GTAC 3 cut(s) 269, 323, 527
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 5 cut(s) 296, 315, 596, 636, 698
SatI GCNGC 3 cut(s) 192, 502, 591
Sau3AI GATC 3 cut(s) 152, 223, 365
Sau96I GGNCC 3 cut(s) 211, 391, 482
ScaI AGTACT 1 cut(s) 270
SchI GAGTC 3 cut(s) 656, 669, 720
ScrFI CCNGG 4 cut(s) 37, 208, 264, 304
SfaNI GCATC 3 cut(s) 66, 467, 577
Sfr274I CTCGAG 1 cut(s) 677
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 2 cut(s) 211, 391
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 605, 677
SmoI CTYRAG 2 cut(s) 605, 677
Sse9I AATT 2 cut(s) 83, 572
SsiI CCGC 1 cut(s) 214
SspMI CTAG 4 cut(s) 107, 498, 665, 708
StyD4I CCNGG 4 cut(s) 35, 206, 262, 302
TaaI ACNGT 2 cut(s) 445, 451
TaiI ACGT 2 cut(s) 432, 585
TaqI TCGA 2 cut(s) 241, 678
TasI AATT 2 cut(s) 83, 572
TatI WGTACW 2 cut(s) 268, 526
Tru1I TTAA 5 cut(s) 296, 315, 596, 636, 698
Tru9I TTAA 5 cut(s) 296, 315, 596, 636, 698
TscAI CASTG 2 cut(s) 187, 468
TseFI GTSAC 3 cut(s) 439, 445, 600
TseI GCWGC 3 cut(s) 191, 501, 590
Tsp45I GTSAC 3 cut(s) 439, 445, 600
TspDTI ATGAA 3 cut(s) 81, 463, 585
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 2 cut(s) 187, 468
VpaK11BI GGWCC 2 cut(s) 211, 391
XapI RAATTY 1 cut(s) 572
XhoI CTCGAG 1 cut(s) 677
XspI CTAG 4 cut(s) 107, 498, 665, 708
ZrmI AGTACT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.