MD10G1134100.v1.1

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000199
Physical Location & Seq
Reverse (-)
21601921 .. 21602751
831 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1134100.v1.1.491

Sequence Viewer

Length: 831 bp
ATGACTTTCCACACTCGCTCTAACAGCTTCCCCTCAAGGCCACACCCGATCGTTCAAGAAGTTGATGAACATTTGTCTATATTGAGGTCTTCTGAAGTCACCTCCACATCTTCTTCATCAATCAACCACAACCTAAGTAGCCTTGGAGACTTGTATGATTGTGTTGATAGGTTGCTTCAGTTGTCCCTCACACAACAAGTCTTGGCCCAGGAGCAGAATGAGAGATGGACCAATGATCTATTAGATGGCTCTCTCAGACTCTTGGACGTTTGCAGCACTGCCAAGGATGCCGTCTTGCAAACAAAGGCATATGTAAAGGATCTTCAATCGATCATAAGAAGAACGCGAGGAGGTGAGTCTGAAGGTCTTACAAGTGAGGTTAACAAATACTTGAGCTCCAGGAAGATGATTAAAAAAGCTATCCAAAAGGCTATGAAGAATCTAAAGGGAATCGATAGCAAAACCACCTTCTCTTCCCTTGACAACGACCAGGAGACAGTTGCCATTGTTGGCAAGTTGAGAGATGTTGAAGCAATCACTCTCGCAGTGTTCGAATCACTTCTGTCCTTCGTCTCTGGGCCCAAGTCAAAGCCAGGCTGGTCAATTGTTTCCAAGATGATTCCCACCAAAAAGGTTGCATGTGAAGAAACCGAAGCAAATGAGTTTGCACAAGTCGATGCTGCACTACATAGGACAAGCAAATCCAATAACGCACAGAACCAGCTTGAGATGCTGGAGTCATGCATTCAAGGTCAGGAAGAAGGACTTGAAAGCCTATTTAGGCAGTTGATCAAAACAAGAGTATCTCTCCTCAACATCCTAAATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

277

Amino Acids

30.74

Weight (kDa)

6.61

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 273 8.3e-86 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 346
AclWI GGATC 1 cut(s) 327
AcuI CTGAAG 3 cut(s) 114, 161, 381
AgsI TTSAA 5 cut(s) 56, 326, 530, 749, 770
AjnI CCWGG 4 cut(s) 207, 398, 489, 592
AluBI AGCT 4 cut(s) 27, 396, 419, 724
AluI AGCT 4 cut(s) 27, 396, 419, 724
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 3 cut(s) 141, 488, 577
AlwI GGATC 1 cut(s) 327
AoxI GGCC 3 cut(s) 38, 204, 578
ApaI GGGCCC 1 cut(s) 582
ApeKI GCWGC 2 cut(s) 273, 680
Asp700I GAANNNNTTC 1 cut(s) 558
AspS9I GGNCC 4 cut(s) 205, 228, 578, 579
AsuHPI GGTGA 2 cut(s) 91, 365
AsuII TTCGAA 1 cut(s) 552
AvaII GGWCC 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 582
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BanII GRGCYC 2 cut(s) 398, 582
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 285, 667
BccI CCATC 2 cut(s) 219, 239
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 4 cut(s) 209, 400, 491, 594
BclI TGATCA 1 cut(s) 789
BcoDI GTCTC 3 cut(s) 141, 488, 577
BfaI CTAG 1 cut(s) 829
BisI GCNGC 2 cut(s) 274, 681
BlsI GCNGC 2 cut(s) 275, 682
Bme1390I CCNGG 4 cut(s) 209, 400, 491, 594
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 4 cut(s) 205, 228, 578, 579
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 4 cut(s) 209, 400, 491, 594
BmsI GCATC 3 cut(s) 277, 667, 720
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 792, 824
BpmI CTGGAG 2 cut(s) 382, 755
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 19, 412, 746
Bsa29I ATCGAT 2 cut(s) 329, 453
BsaJI CCNNGG 3 cut(s) 142, 207, 282
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
BseBI CCWGG 4 cut(s) 209, 400, 491, 594
BseCI ATCGAT 2 cut(s) 329, 453
BseDI CCNNGG 3 cut(s) 142, 207, 282
BseGI GGATG 2 cut(s) 292, 816
BseMII CTCAG 1 cut(s) 268
BseRI GAGGAG 2 cut(s) 363, 800
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 2 cut(s) 285, 667
BsgI GTGCAG 1 cut(s) 666
Bsh1236I CGCG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 3 cut(s) 40, 206, 580
BshVI ATCGAT 2 cut(s) 329, 453
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 398
BslFI GGGAC 1 cut(s) 169
BsmAI GTCTC 3 cut(s) 141, 488, 577
BsmBI CGTCTC 1 cut(s) 577
BsmFI GGGAC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 744
BsnI GGCC 3 cut(s) 40, 206, 580
Bsp119I TTCGAA 1 cut(s) 552
Bsp120I GGGCCC 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 398, 582
Bsp143I GATC 5 cut(s) 48, 235, 319, 330, 789
BspANI GGCC 3 cut(s) 40, 206, 580
BspCNI CTCAG 1 cut(s) 267
BspDI ATCGAT 2 cut(s) 329, 453
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 580
BspPI GGATC 1 cut(s) 327
BspT104I TTCGAA 1 cut(s) 552
BssECI CCNNGG 3 cut(s) 142, 207, 282
BssMI GATC 5 cut(s) 48, 235, 319, 330, 789
BssT1I CCWWGG 2 cut(s) 142, 282
Bst2UI CCWGG 4 cut(s) 209, 400, 491, 594
Bst4CI ACNGT 1 cut(s) 499
Bst6I CTCTTC 1 cut(s) 478
BstBI TTCGAA 1 cut(s) 552
BstDEI CTNAG 2 cut(s) 134, 254
BstF5I GGATG 2 cut(s) 292, 816
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 5 cut(s) 51, 238, 322, 333, 792
BstMAI GTCTC 3 cut(s) 141, 488, 577
BstMBI GATC 5 cut(s) 48, 235, 319, 330, 789
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 24, 287, 730
BstNI CCWGG 4 cut(s) 209, 400, 491, 594
BstNSI RCATGY 1 cut(s) 642
BstSCI CCNGG 4 cut(s) 207, 398, 489, 592
BstSLI GKGCMC 1 cut(s) 582
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 2 cut(s) 285, 667
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Bsu15I ATCGAT 2 cut(s) 329, 453
BsuRI GGCC 3 cut(s) 40, 206, 580
BsuTUI ATCGAT 2 cut(s) 329, 453
BtsCI GGATG 2 cut(s) 292, 816
BtsI GCAGTG 2 cut(s) 276, 552
BtsIMutI CAGTG 2 cut(s) 276, 552
Cfr13I GGNCC 4 cut(s) 205, 228, 578, 579
ClaI ATCGAT 2 cut(s) 329, 453
CviAII CATG 2 cut(s) 639, 741
DdeI CTNAG 2 cut(s) 134, 254
DpnI GATC 5 cut(s) 50, 237, 321, 332, 791
DpnII GATC 5 cut(s) 48, 235, 319, 330, 789
Eam1104I CTCTTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 478
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 142, 282
Eco24I GRGCYC 2 cut(s) 398, 582
Eco47I GGWCC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 396
Eco57I CTGAAG 3 cut(s) 114, 161, 381
EcoICRI GAGCTC 1 cut(s) 396
EcoRII CCWGG 4 cut(s) 207, 398, 489, 592
EcoT14I CCWWGG 2 cut(s) 142, 282
EcoT22I ATGCAT 1 cut(s) 746
EcoT38I GRGCYC 2 cut(s) 398, 582
ErhI CCWWGG 2 cut(s) 142, 282
Esp3I CGTCTC 1 cut(s) 577
FaeI CATG 2 cut(s) 642, 744
FaiI YATR 9 cut(s) 80, 156, 310, 312, 335, 434, 640, 690, 742
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 1 cut(s) 169
FatI CATG 2 cut(s) 638, 740
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 789
Fnu4HI GCNGC 2 cut(s) 274, 681
FokI GGATG 2 cut(s) 299, 803
FriOI GRGCYC 2 cut(s) 398, 582
Fsp4HI GCNGC 2 cut(s) 274, 681
FspBI CTAG 1 cut(s) 829
GluI GCNGC 2 cut(s) 274, 681
GsuI CTGGAG 2 cut(s) 382, 755
HaeIII GGCC 3 cut(s) 40, 206, 580
Hin1II CATG 2 cut(s) 642, 744
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 7 cut(s) 258, 356, 439, 450, 554, 619, 737
HpaI GTTAAC 1 cut(s) 382
HphI GGTGA 2 cut(s) 91, 365
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 3 cut(s) 94, 257, 361
Hpy188III TCNNGA 2 cut(s) 56, 755
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 4 cut(s) 356, 478, 577, 755
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 6 cut(s) 273, 298, 638, 668, 683, 744
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 287, 730
HpyF3I CTNAG 2 cut(s) 134, 254
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 2 cut(s) 642, 744
Ksp22I TGATCA 1 cut(s) 789
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 5 cut(s) 48, 235, 319, 330, 789
LmnI GCTCC 2 cut(s) 211, 401
Lsp1109I GCAGC 2 cut(s) 285, 667
LweI GCATC 3 cut(s) 277, 667, 720
MaeI CTAG 1 cut(s) 829
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 97
MalI GATC 5 cut(s) 50, 237, 321, 332, 791
MboI GATC 5 cut(s) 48, 235, 319, 330, 789
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 398, 582
MluCI AATT 1 cut(s) 603
MlyI GAGTC 3 cut(s) 252, 365, 746
MnlI CCTC 8 cut(s) 43, 78, 112, 197, 341, 344, 370, 821
Mph1103I ATGCAT 1 cut(s) 746
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 2 cut(s) 381, 411
MspR9I CCNGG 4 cut(s) 209, 400, 491, 594
MunI CAATTG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 744
MvaI CCWGG 4 cut(s) 209, 400, 491, 594
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 3 cut(s) 24, 287, 730
NdeI CATATG 1 cut(s) 310
NdeII GATC 5 cut(s) 48, 235, 319, 330, 789
NlaIII CATG 2 cut(s) 642, 744
NlaIV GGNNCC 1 cut(s) 580
NmuCI GTSAC 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 746
NspI RCATGY 1 cut(s) 642
NspV TTCGAA 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PctI GAATGC 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 4 cut(s) 439, 450, 554, 619
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 2 cut(s) 275, 682
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 3 cut(s) 252, 364, 745
PpsI GAGTC 3 cut(s) 252, 364, 745
Psp124BI GAGCTC 1 cut(s) 398
Psp6I CCWGG 4 cut(s) 207, 398, 489, 592
PspGI CCWGG 4 cut(s) 207, 398, 489, 592
PspN4I GGNNCC 1 cut(s) 580
PspOMI GGGCCC 1 cut(s) 578
PspPI GGNCC 4 cut(s) 205, 228, 578, 579
PsuI RGATCY 1 cut(s) 319
PvuI CGATCG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 398
SaqAI TTAA 2 cut(s) 381, 411
SatI GCNGC 2 cut(s) 274, 681
Sau3AI GATC 5 cut(s) 48, 235, 319, 330, 789
Sau96I GGNCC 4 cut(s) 205, 228, 578, 579
SchI GAGTC 3 cut(s) 252, 365, 746
ScrFI CCNGG 4 cut(s) 209, 400, 491, 594
SduI GDGCHC 2 cut(s) 398, 582
SfaNI GCATC 3 cut(s) 277, 667, 720
SfuI TTCGAA 1 cut(s) 552
SinI GGWCC 1 cut(s) 228
SmlI CTYRAG 3 cut(s) 34, 391, 725
SmoI CTYRAG 3 cut(s) 34, 391, 725
Sse9I AATT 1 cut(s) 603
SspMI CTAG 1 cut(s) 829
SstI GAGCTC 1 cut(s) 398
StyD4I CCNGG 4 cut(s) 207, 398, 489, 592
StyI CCWWGG 2 cut(s) 142, 282
TaaI ACNGT 1 cut(s) 499
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 329, 453, 552, 675
TasI AATT 1 cut(s) 603
TfiI GAWTC 4 cut(s) 439, 450, 554, 619
Tru1I TTAA 2 cut(s) 381, 411
Tru9I TTAA 2 cut(s) 381, 411
TscAI CASTG 2 cut(s) 283, 552
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 2 cut(s) 273, 680
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 81, 105, 449
TspRI CASTG 2 cut(s) 283, 552
VpaK11BI GGWCC 1 cut(s) 228
XceI RCATGY 1 cut(s) 642
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 1 cut(s) 829
Zsp2I ATGCAT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.