FvH4_2g16201

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Reverse (-)
14166733 .. 14169136
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16201.t1

Sequence Viewer

Length: 915 bp
ATGAAGCAGATGCATAAGGAAATAACTCATCAGTTTCTATTGTACATCACCTGCAAGGTCTTCTATCATCTCCTAAATCACAAAAAGCAAATGGCTTACCACACTCGATCTAACAGCTTCCCCTCTAGGCCACACCCAATCAATCAAGAAGTTGATGAATATTTGTGCAGATTGAGGTCTTCTGAAACAACTTCCACATCATCCATAAGCCCCAGACTAAGTAGTCTTCAAGAGTTGCATGATTGTGTTGATAGGTTGCTTCAATTGCCACTCACCCAACAATCCTTGTCACAACAGAAGCATCAGAAATGGGCTGATGAGCTACTAAACGGATCTCCTAGGATCTTGGATGTTTGTAGCGCTGCCAAGGATGCAGTGTTGCAATCCAAGGAGTACATACAAGACCTTCAATCAATCATCAGAAGAAGGCGTAAAGACGACTCTGGAGTGCTCACAAGTGAGGTTAGAAAATACTTAACCTCAAGGAAGACAGTGAAAAAGGCAATCCACAAGGCTTTAAAGAATCTGAAGGCAAACAGATCAACTTTCTCTTCACTCGACAACGACCAAGAGACTATCGCCATTGTCAGCAAGCTGAGAGATGTTGAAGCAGTCACCCTCACAGTGTTGGAATCAGTTTTGTCCTTCATCTCTGGGCCAAAGTCAAAGCCTTGCAGCTGGCCTTTGGTTTCTAAGATGGTGCAGTCTAAAAGAATAGCTTGCGAGGAAGAAATGGAAGTAAACGAATTTGCACAAGTGGATGCTGCATTGAAGTCACAAAAGAATTTAGACAATGCACACAACCAGCTTAACAATCTGAATTCATGCATTCAAGATCAAGAAGAAGGACTCGAGTGCCTATTTAGGCAATTGATCAAAACAAGAGTCTCCCTCCTCAACATCTTAAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

305

Amino Acids

34.88

Weight (kDa)

9.11

Isoelectric Point (pI)

64.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 73 - 301 9.3e-82 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
AasI GACNNNNNNGTC 1 cut(s) 222
Acc36I ACCTGC 1 cut(s) 59
AclWI GGATC 2 cut(s) 340, 350
AcsI RAATTY 3 cut(s) 746, 784, 820
AcuI CTGAAG 1 cut(s) 548
AfaI GTAC 2 cut(s) 44, 395
AfeI AGCGCT 1 cut(s) 361
AgsI TTSAA 6 cut(s) 230, 263, 410, 608, 772, 833
AluBI AGCT 6 cut(s) 117, 322, 595, 678, 719, 808
AluI AGCT 6 cut(s) 117, 322, 595, 678, 719, 808
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 2 cut(s) 566, 892
AlwI GGATC 2 cut(s) 340, 350
Ama87I CYCGRG 1 cut(s) 851
Aor51HI AGCGCT 1 cut(s) 361
AoxI GGCC 3 cut(s) 128, 656, 680
ApeKI GCWGC 3 cut(s) 362, 675, 764
ApoI RAATTY 3 cut(s) 746, 784, 820
ArsI GACNNNNNNTTYG 2 cut(s) 870, 902
AspA2I CCTAGG 1 cut(s) 338
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 3 cut(s) 40, 265, 607
AvaI CYCGRG 1 cut(s) 851
AvrII CCTAGG 1 cut(s) 338
BbsI GAAGAC 4 cut(s) 52, 171, 218, 494
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 3 cut(s) 349, 687, 751
BccI CCATC 1 cut(s) 691
BclI TGATCA 1 cut(s) 873
BcoDI GTCTC 2 cut(s) 566, 892
BfaI CTAG 3 cut(s) 126, 339, 913
BfoI RGCGCY 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 3 cut(s) 363, 676, 765
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 3 cut(s) 364, 677, 766
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 1 cut(s) 656
BmsI GCATC 3 cut(s) 310, 361, 751
BpiI GAAGAC 4 cut(s) 52, 171, 218, 494
BplI GAGNNNNNCTC 2 cut(s) 876, 908
BpmI CTGGAG 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 466
BsaJI CCNNGG 3 cut(s) 338, 366, 387
BseDI CCNNGG 3 cut(s) 338, 366, 387
BseGI GGATG 4 cut(s) 200, 355, 376, 766
BseMII CTCAG 1 cut(s) 587
BseRI GAGGAG 1 cut(s) 884
BseXI GCAGC 3 cut(s) 349, 687, 751
BsgI GTGCAG 2 cut(s) 187, 722
BshFI GGCC 3 cut(s) 130, 658, 682
BsiHKAI GWGCWC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 851
BsmAI GTCTC 2 cut(s) 566, 892
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 3 cut(s) 130, 658, 682
BsoBI CYCGRG 1 cut(s) 851
Bsp1286I GDGCHC 1 cut(s) 453
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 6 cut(s) 107, 332, 342, 539, 835, 873
BspANI GGCC 3 cut(s) 130, 658, 682
BspCNI CTCAG 1 cut(s) 588
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 2 cut(s) 340, 350
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 3 cut(s) 338, 366, 387
BssMI GATC 6 cut(s) 107, 332, 342, 539, 835, 873
BssT1I CCWWGG 3 cut(s) 338, 366, 387
Bst4CI ACNGT 2 cut(s) 493, 625
Bst6I CTCTTC 1 cut(s) 556
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 3 cut(s) 593, 680, 721
BstDEI CTNAG 3 cut(s) 218, 596, 693
BstF5I GGATG 4 cut(s) 200, 355, 376, 766
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 6 cut(s) 110, 335, 345, 542, 838, 876
BstMAI GTCTC 2 cut(s) 566, 892
BstMBI GATC 6 cut(s) 107, 332, 342, 539, 835, 873
BstMWI GCNNNNNNNGC 2 cut(s) 265, 371
BstV1I GCAGC 3 cut(s) 349, 687, 751
BstV2I GAAGAC 4 cut(s) 52, 171, 218, 494
BstX2I RGATCY 2 cut(s) 332, 342
BstYI RGATCY 2 cut(s) 332, 342
BsuRI GGCC 3 cut(s) 130, 658, 682
BtsCI GGATG 4 cut(s) 200, 355, 376, 766
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 3 cut(s) 381, 498, 630
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 3 cut(s) 593, 680, 721
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 43, 394
CviAII CATG 2 cut(s) 239, 825
CviQI GTAC 2 cut(s) 43, 394
DdeI CTNAG 3 cut(s) 218, 596, 693
DpnI GATC 6 cut(s) 109, 334, 344, 541, 837, 875
DpnII GATC 6 cut(s) 107, 332, 342, 539, 835, 873
DraI TTTAAA 1 cut(s) 519
DrdI GACNNNNNNGTC 1 cut(s) 222
DseDI GACNNNNNNGTC 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 556
Eco130I CCWWGG 3 cut(s) 338, 366, 387
Eco47III AGCGCT 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 820
EcoT14I CCWWGG 3 cut(s) 338, 366, 387
EcoT22I ATGCAT 2 cut(s) 15, 830
ErhI CCWWGG 3 cut(s) 338, 366, 387
FaeI CATG 2 cut(s) 242, 828
FaiI YATR 5 cut(s) 15, 206, 240, 398, 826
FalI AAGNNNNNCTT 2 cut(s) 703, 735
FatI CATG 2 cut(s) 238, 824
FbaI TGATCA 1 cut(s) 873
Fnu4HI GCNGC 3 cut(s) 363, 676, 765
FokI GGATG 4 cut(s) 187, 362, 383, 773
Fsp4HI GCNGC 3 cut(s) 363, 676, 765
FspBI CTAG 3 cut(s) 126, 339, 913
GlaI GCGC 1 cut(s) 361
GluI GCNGC 3 cut(s) 363, 676, 765
GsuI CTGGAG 1 cut(s) 465
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 3 cut(s) 130, 658, 682
HhaI GCGC 1 cut(s) 362
Hin1II CATG 2 cut(s) 242, 828
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HinfI GANTC 5 cut(s) 440, 523, 632, 849, 885
HphI GGTGA 3 cut(s) 40, 265, 607
Hpy166II GTNNAC 1 cut(s) 742
Hpy188I TCNGA 5 cut(s) 184, 306, 422, 528, 819
Hpy188III TCNNGA 5 cut(s) 146, 230, 444, 833, 839
Hpy8I GTNNAC 1 cut(s) 742
HpyAV CCTTC 5 cut(s) 416, 420, 523, 655, 839
HpyCH4III ACNGT 2 cut(s) 493, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 371
HpyF3I CTNAG 3 cut(s) 218, 596, 693
Hsp92II CATG 2 cut(s) 242, 828
HspAI GCGC 1 cut(s) 360
Ksp22I TGATCA 1 cut(s) 873
Kzo9I GATC 6 cut(s) 107, 332, 342, 539, 835, 873
LpnPI CCDG 6 cut(s) 64, 226, 429, 639, 664, 818
Lsp1109I GCAGC 3 cut(s) 349, 687, 751
LweI GCATC 3 cut(s) 310, 361, 751
MaeI CTAG 3 cut(s) 126, 339, 913
MaeIII GTNAC 3 cut(s) 288, 613, 774
MalI GATC 6 cut(s) 109, 334, 344, 541, 837, 875
MboI GATC 6 cut(s) 107, 332, 342, 539, 835, 873
MboII GAAGA 8 cut(s) 52, 171, 218, 435, 499, 543, 740, 854
MfeI CAATTG 2 cut(s) 263, 869
MflI RGATCY 2 cut(s) 332, 342
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 5 cut(s) 263, 746, 784, 820, 869
MlyI GAGTC 3 cut(s) 434, 843, 894
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 8 cut(s) 133, 168, 454, 490, 629, 718, 902, 905
Mph1103I ATGCAT 2 cut(s) 15, 830
MseI TTAA 4 cut(s) 476, 518, 810, 905
MslI CAYNNNNRTG 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 678
MunI CAATTG 2 cut(s) 263, 869
Mva1269I GAATGC 1 cut(s) 828
MwoI GCNNNNNNNGC 2 cut(s) 265, 371
NdeII GATC 6 cut(s) 107, 332, 342, 539, 835, 873
NlaIII CATG 2 cut(s) 242, 828
NmuCI GTSAC 3 cut(s) 288, 613, 774
NsiI ATGCAT 2 cut(s) 15, 830
PaeR7I CTCGAG 1 cut(s) 851
PaqCI CACCTGC 1 cut(s) 59
PctI GAATGC 1 cut(s) 828
PfeI GAWTC 2 cut(s) 523, 632
PkrI GCNGC 3 cut(s) 364, 677, 766
PleI GAGTC 3 cut(s) 434, 843, 893
PpsI GAGTC 3 cut(s) 434, 843, 893
PspPI GGNCC 1 cut(s) 656
PspXI VCTCGAGB 1 cut(s) 851
PsuI RGATCY 2 cut(s) 332, 342
PvuII CAGCTG 1 cut(s) 678
RsaI GTAC 2 cut(s) 44, 395
RsaNI GTAC 2 cut(s) 43, 394
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 4 cut(s) 476, 518, 810, 905
SatI GCNGC 3 cut(s) 363, 676, 765
Sau3AI GATC 6 cut(s) 107, 332, 342, 539, 835, 873
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 3 cut(s) 434, 843, 894
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 3 cut(s) 310, 361, 751
Sfr274I CTCGAG 1 cut(s) 851
SlaI CTCGAG 1 cut(s) 851
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 2 cut(s) 481, 851
SmoI CTYRAG 2 cut(s) 481, 851
Sse9I AATT 5 cut(s) 263, 746, 784, 820, 869
SspI AATATT 1 cut(s) 161
SspMI CTAG 3 cut(s) 126, 339, 913
StyI CCWWGG 3 cut(s) 338, 366, 387
TaaI ACNGT 2 cut(s) 493, 625
TaqI TCGA 3 cut(s) 106, 558, 852
TasI AATT 5 cut(s) 263, 746, 784, 820, 869
TatI WGTACW 2 cut(s) 42, 393
TfiI GAWTC 2 cut(s) 523, 632
Tru1I TTAA 4 cut(s) 476, 518, 810, 905
Tru9I TTAA 4 cut(s) 476, 518, 810, 905
TscAI CASTG 3 cut(s) 381, 498, 630
TseFI GTSAC 3 cut(s) 288, 613, 774
TseI GCWGC 3 cut(s) 362, 675, 764
Tsp45I GTSAC 3 cut(s) 288, 613, 774
TspDTI ATGAA 4 cut(s) 17, 171, 637, 813
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 3 cut(s) 381, 498, 630
XapI RAATTY 3 cut(s) 746, 784, 820
XhoI CTCGAG 1 cut(s) 851
XmaJI CCTAGG 1 cut(s) 338
XspI CTAG 3 cut(s) 126, 339, 913
Zsp2I ATGCAT 2 cut(s) 15, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.