Rw6G020780

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000199
Physical Location & Seq
Reverse (-)
41414085 .. 41424046
9962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020780.1

Sequence Viewer

Length: 561 bp
ATGGCTTTCCACACTCGCTCCAACAGCTTTCCCTCAAGGCCACACCCACTGTTTCAAGAAATTGATGAGCATTTGTTCAGATTGAAGCCTTGGCACAAGAGCAGCATCAGAAATGAGCTATTAGATGGATCTCTCAGGATCTTGGATGTTTGTAGCACTTCCAAAGATGCCCTGATGAAAACCAAGGAAAACGTACAAGATCTTCAATCAATCATTCGAAGAAAGCGTGGAGATGAATCTGCAGTACTCAAGAGTGAAGCAAGGAAATACTTGATATCCAGGAAGACTGTGAAAAAGGCTCTCCACAAAGCTTTGGGGAACATGAAGGGAATGGCAAACAGATCTTCGTCTTCCTGCAACAAGGATCAAGAGACTATTGTAAGATCAAATATGGACTTAACACATATCATCATAAACAAGCTGAGAGATGTGGAAGCAGTCACTCTCGCCATGTTTGAATCAATGTTGAACCAGTCACACTCTCAGTGTAAGAATCACTACTGTCCTTCATCTCTGGGCCAAAGTCAAAACCAAGCGGCTGGTCATTGGTTACCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

186

Amino Acids

21.25

Weight (kDa)

9.84

Isoelectric Point (pI)

64.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 33 - 162 6.4e-33 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 536
AclWI GGATC 3 cut(s) 136, 146, 372
AfaI GTAC 2 cut(s) 195, 246
AgsI TTSAA 5 cut(s) 56, 85, 206, 458, 469
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 4 cut(s) 27, 118, 311, 421
AluI AGCT 4 cut(s) 27, 118, 311, 421
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 3 cut(s) 136, 146, 372
AoxI GGCC 2 cut(s) 38, 517
ApeKI GCWGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 517
AsuII TTCGAA 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 186, 218
BbsI GAAGAC 2 cut(s) 290, 342
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 240
BglII AGATCT 2 cut(s) 199, 341
BisI GCNGC 2 cut(s) 103, 537
BlsI GCNGC 2 cut(s) 104, 538
BmcAI AGTACT 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 517
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 2 cut(s) 114, 157
BpiI GAAGAC 2 cut(s) 290, 342
Bpu14I TTCGAA 1 cut(s) 217
BpuEI CTTGAG 2 cut(s) 19, 233
BsaJI CCNNGG 2 cut(s) 89, 183
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 472
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 89, 183
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 148, 413, 497
BseNI ACTGG 1 cut(s) 472
BseXI GCAGC 1 cut(s) 114
BshFI GGCC 2 cut(s) 40, 519
BsmAI GTCTC 1 cut(s) 365
BsnI GGCC 2 cut(s) 40, 519
Bsp119I TTCGAA 1 cut(s) 217
Bsp143I GATC 6 cut(s) 128, 138, 199, 341, 364, 383
BspACI CCGC 1 cut(s) 536
BspANI GGCC 2 cut(s) 40, 519
BspCNI CTCAG 3 cut(s) 147, 414, 496
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 3 cut(s) 136, 146, 372
BspT104I TTCGAA 1 cut(s) 217
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 2 cut(s) 89, 183
BssMI GATC 6 cut(s) 128, 138, 199, 341, 364, 383
BssT1I CCWWGG 2 cut(s) 89, 183
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 3 cut(s) 51, 289, 503
BstBI TTCGAA 1 cut(s) 217
BstDEI CTNAG 3 cut(s) 134, 422, 483
BstEII GGTNACC 1 cut(s) 549
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 6 cut(s) 131, 141, 202, 344, 367, 386
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 6 cut(s) 128, 138, 199, 341, 364, 383
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 280
BstPI GGTNACC 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 2 cut(s) 290, 342
BstX2I RGATCY 4 cut(s) 128, 138, 199, 341
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 4 cut(s) 128, 138, 199, 341
BsuRI GGCC 2 cut(s) 40, 519
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 47, 491
Cfr13I GGNCC 1 cut(s) 517
Csp6I GTAC 2 cut(s) 194, 245
CviAII CATG 2 cut(s) 322, 451
CviQI GTAC 2 cut(s) 194, 245
DdeI CTNAG 3 cut(s) 134, 422, 483
DpnI GATC 6 cut(s) 130, 140, 201, 343, 366, 385
DpnII GATC 6 cut(s) 128, 138, 199, 341, 364, 383
Eco130I CCWWGG 2 cut(s) 89, 183
Eco32I GATATC 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 549
EcoO65I GGTNACC 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 278
EcoRV GATATC 1 cut(s) 276
EcoT14I CCWWGG 2 cut(s) 89, 183
ErhI CCWWGG 2 cut(s) 89, 183
FaeI CATG 2 cut(s) 325, 454
FaiI YATR 5 cut(s) 323, 392, 405, 413, 452
FatI CATG 2 cut(s) 321, 450
Fnu4HI GCNGC 2 cut(s) 103, 537
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 103, 537
GluI GCNGC 2 cut(s) 103, 537
HaeIII GGCC 2 cut(s) 40, 519
Hin1II CATG 2 cut(s) 325, 454
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 3 cut(s) 236, 458, 493
Hpy188I TCNGA 2 cut(s) 80, 110
Hpy188III TCNNGA 4 cut(s) 56, 136, 250, 368
HpyAV CCTTC 2 cut(s) 319, 516
HpyCH4III ACNGT 3 cut(s) 51, 289, 503
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 242, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 3 cut(s) 134, 422, 483
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 2 cut(s) 325, 454
Kzo9I GATC 6 cut(s) 128, 138, 199, 341, 364, 383
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 8 cut(s) 121, 185, 265, 292, 367, 485, 500, 525
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 2 cut(s) 114, 157
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 3 cut(s) 439, 474, 549
MalI GATC 6 cut(s) 130, 140, 201, 343, 366, 385
MboI GATC 6 cut(s) 128, 138, 199, 341, 364, 383
MboII GAAGA 5 cut(s) 194, 231, 295, 336, 342
MflI RGATCY 4 cut(s) 128, 138, 199, 341
MluCI AATT 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 1 cut(s) 43
MseI TTAA 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 6 cut(s) 128, 138, 199, 341, 364, 383
NlaIII CATG 2 cut(s) 325, 454
NmuCI GTSAC 2 cut(s) 439, 474
NspV TTCGAA 1 cut(s) 217
PcsI WCGNNNNNNNCGW 1 cut(s) 223
PfeI GAWTC 3 cut(s) 236, 458, 493
PfoI TCCNGGA 1 cut(s) 278
PkrI GCNGC 2 cut(s) 104, 538
Psp6I CCWGG 1 cut(s) 278
PspEI GGTNACC 1 cut(s) 549
PspGI CCWGG 1 cut(s) 278
PspPI GGNCC 1 cut(s) 517
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 4 cut(s) 128, 138, 199, 341
RsaI GTAC 2 cut(s) 195, 246
RsaNI GTAC 2 cut(s) 194, 245
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 2 cut(s) 103, 537
Sau3AI GATC 6 cut(s) 128, 138, 199, 341, 364, 383
Sau96I GGNCC 1 cut(s) 517
ScaI AGTACT 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 280
SetI ASST 5 cut(s) 29, 120, 195, 313, 423
SfaNI GCATC 2 cut(s) 114, 157
SfcI CTRYAG 1 cut(s) 240
SfuI TTCGAA 1 cut(s) 217
SmlI CTYRAG 2 cut(s) 34, 248
SmoI CTYRAG 2 cut(s) 34, 248
Sse9I AATT 1 cut(s) 60
SsiI CCGC 1 cut(s) 536
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 2 cut(s) 89, 183
TaaI ACNGT 3 cut(s) 51, 289, 503
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 217
TasI AATT 1 cut(s) 60
TatI WGTACW 1 cut(s) 244
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 3 cut(s) 236, 458, 493
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TscAI CASTG 2 cut(s) 54, 491
TseFI GTSAC 2 cut(s) 439, 474
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 2 cut(s) 439, 474
TspDTI ATGAA 4 cut(s) 191, 249, 338, 498
TspRI CASTG 2 cut(s) 54, 491
ZrmI AGTACT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.