RchiOBHm_Chr6g0279881

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000199
Physical Location & Seq
Reverse (-)
43074004 .. 43074396
393 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25098

Sequence Viewer

Length: 393 bp
ATGGCTTTCCACACTCGCTCCAACAGCTTTCCCTCAAGGCCACACCCACTGTTTCAAGAAATTGATGAGCATTTGTACAGATTGAAGTCTTCTGAGGCCACCTCCACATCTTCATCATCAATAAGCCACAAACTAAGCGGTCTCCAAGACTTGCATGATTGTGTCGATAGGTTGCTTCAATTGCCTCTCACCCAAAAGGCCTTGGCACAAGAGCAGCATCATAAATGGGCTAATGAGCTATTAGATGGATCTCTCAGGATCTTGGACGTTTGTACCACTTCCAAAGATACCCTGATGAAAACCAAGGAAAACGTACAAGATCTTCAATCAATCATTCGAAGAAAGCGTGGAGATGAAGCTGCAGTACTCAAGAGTGAAGCAAGGAATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

130

Amino Acids

14.78

Weight (kDa)

7.87

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 124 2e-33 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 256, 266
AfaI GTAC 4 cut(s) 77, 274, 315, 366
AgsI TTSAA 4 cut(s) 56, 85, 179, 326
AluBI AGCT 3 cut(s) 27, 238, 359
AluI AGCT 3 cut(s) 27, 238, 359
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 2 cut(s) 256, 266
AoxI GGCC 3 cut(s) 38, 96, 198
ApeKI GCWGC 2 cut(s) 214, 359
AsuHPI GGTGA 1 cut(s) 181
AsuII TTCGAA 1 cut(s) 337
BaeI ACNNNNGTAYC 2 cut(s) 256, 289
BarI GAAGNNNNNNTAC 4 cut(s) 306, 338, 348, 380
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 226, 346
BccI CCATC 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 360
BglII AGATCT 1 cut(s) 319
BisI GCNGC 2 cut(s) 215, 360
BlsI GCNGC 2 cut(s) 216, 361
BmcAI AGTACT 1 cut(s) 366
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 86, 118
Bpu14I TTCGAA 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 19, 353
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 201, 303
BsaXI ACNNNNNCTCC 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 201, 303
BseMII CTCAG 2 cut(s) 84, 268
BseXI GCAGC 2 cut(s) 226, 346
BshFI GGCC 3 cut(s) 40, 98, 200
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 3 cut(s) 40, 98, 200
Bso31I GGTCTC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 337
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 3 cut(s) 248, 258, 319
BspACI CCGC 1 cut(s) 138
BspANI GGCC 3 cut(s) 40, 98, 200
BspCNI CTCAG 2 cut(s) 85, 267
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 2 cut(s) 256, 266
BspT104I TTCGAA 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 75
BssECI CCNNGG 2 cut(s) 201, 303
BssMI GATC 3 cut(s) 248, 258, 319
BssT1I CCWWGG 2 cut(s) 201, 303
Bst4CI ACNGT 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 75
BstBI TTCGAA 1 cut(s) 337
BstDEI CTNAG 3 cut(s) 93, 134, 254
BstKTI GATC 3 cut(s) 251, 261, 322
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 3 cut(s) 248, 258, 319
BstMWI GCNNNNNNNGC 2 cut(s) 24, 181
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 226, 346
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 3 cut(s) 248, 258, 319
BstYI RGATCY 3 cut(s) 248, 258, 319
BsuRI GGCC 3 cut(s) 40, 98, 200
BtsIMutI CAGTG 1 cut(s) 47
Csp6I GTAC 4 cut(s) 76, 273, 314, 365
CviAII CATG 1 cut(s) 155
CviJI RGCY 9 cut(s) 5, 27, 40, 98, 126, 200, 230, 238, 359
CviKI_1 RGCY 9 cut(s) 5, 27, 40, 98, 126, 200, 230, 238, 359
CviQI GTAC 4 cut(s) 76, 273, 314, 365
DdeI CTNAG 3 cut(s) 93, 134, 254
DpnI GATC 3 cut(s) 250, 260, 321
DpnII GATC 3 cut(s) 248, 258, 319
Eco130I CCWWGG 2 cut(s) 201, 303
Eco147I AGGCCT 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 201, 303
ErhI CCWWGG 2 cut(s) 201, 303
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 156, 222
FalI AAGNNNNNCTT 1 cut(s) 373
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 215, 360
Fsp4HI GCNGC 2 cut(s) 215, 360
GluI GCNGC 2 cut(s) 215, 360
HaeIII GGCC 3 cut(s) 40, 98, 200
Hin1II CATG 1 cut(s) 158
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 56, 256, 370
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 2 cut(s) 267, 312
HpyCH4V TGCA 2 cut(s) 154, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 181
HpyF3I CTNAG 3 cut(s) 93, 134, 254
HpySE526I ACGT 2 cut(s) 267, 312
Hsp92II CATG 1 cut(s) 158
Kzo9I GATC 3 cut(s) 248, 258, 319
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 2 cut(s) 241, 305
Lsp1109I GCAGC 2 cut(s) 226, 346
LweI GCATC 1 cut(s) 226
MaeII ACGT 2 cut(s) 267, 312
MalI GATC 3 cut(s) 250, 260, 321
MboI GATC 3 cut(s) 248, 258, 319
MboII GAAGA 4 cut(s) 81, 102, 314, 351
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 3 cut(s) 248, 258, 319
MluCI AATT 2 cut(s) 60, 179
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 4 cut(s) 43, 88, 112, 195
MslI CAYNNNNRTG 1 cut(s) 159
MunI CAATTG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 24, 181
NdeII GATC 3 cut(s) 248, 258, 319
NlaIII CATG 1 cut(s) 158
NspV TTCGAA 1 cut(s) 337
PceI AGGCCT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PkrI GCNGC 2 cut(s) 216, 361
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 3 cut(s) 248, 258, 319
RsaI GTAC 4 cut(s) 77, 274, 315, 366
RsaNI GTAC 4 cut(s) 76, 273, 314, 365
RseI CAYNNNNRTG 1 cut(s) 159
SatI GCNGC 2 cut(s) 215, 360
Sau3AI GATC 3 cut(s) 248, 258, 319
ScaI AGTACT 1 cut(s) 366
SetI ASST 7 cut(s) 29, 104, 173, 240, 270, 315, 361
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 34, 368
SmoI CTYRAG 2 cut(s) 34, 368
Sse9I AATT 2 cut(s) 60, 179
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 1 cut(s) 138
StuI AGGCCT 1 cut(s) 200
StyI CCWWGG 2 cut(s) 201, 303
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 2 cut(s) 270, 315
TaqI TCGA 2 cut(s) 165, 337
TasI AATT 2 cut(s) 60, 179
TatI WGTACW 2 cut(s) 75, 364
TscAI CASTG 1 cut(s) 54
TseI GCWGC 2 cut(s) 214, 359
TspDTI ATGAA 3 cut(s) 102, 311, 369
TspRI CASTG 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.