Rorug06G0128800

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000199
Physical Location & Seq
Reverse (-)
17860486 .. 17863647
3162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0128800.1

Sequence Viewer

Length: 345 bp
ATGACGTCAAGTTGGTGGAGATCTCATGAAGAAGTCTATCCAGTGCTTTCTTTGATAGCTCGTGATCTGCTATCGATTCCAGCTTCAACAGTAGCATCAGAGGCAGCTTTTAGTGCCGGTGGAAGGGTTGTATCGGAGAAGAGAGCAAGTCTGAACCCGGACATAATTCAAGCATTGATTTGCTTGAAAGATTGGAAGCTGGCAGAAGCAAGGCAGCAAGACAAAGAGCAAGATGAGCTCCGAGCTGAAGAGGAACAAAATGCAAAACTAGCAAGACCGGAATGGATGATTGCACTTGAACGTGCTAATTCAAACACGGAAGGCGTCGAGTCAATTGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

114

Amino Acids

12.72

Weight (kDa)

4.75

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 4 - 65 1.3e-23 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 267
AcyI GRCGYC 2 cut(s) 5, 324
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 5 cut(s) 87, 170, 187, 299, 312
AluBI AGCT 6 cut(s) 59, 83, 107, 199, 238, 245
AluI AGCT 6 cut(s) 59, 83, 107, 199, 238, 245
Alw21I GWGCWC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 104, 214
AsuC2I CCSGG 1 cut(s) 158
BanII GRGCYC 1 cut(s) 240
BauI CACGAG 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 116, 226
BcnI CCSGG 1 cut(s) 158
BfaI CTAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 20
BisI GCNGC 2 cut(s) 105, 215
BlsI GCNGC 2 cut(s) 106, 216
Bme1390I CCNGG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 158
Bsa29I ATCGAT 1 cut(s) 74
BsaHI GRCGYC 2 cut(s) 5, 324
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 74
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 116, 226
BshVI ATCGAT 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 3 cut(s) 117, 158, 278
BslI CCNNNNNNNGG 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 20, 64
BspDI ATCGAT 1 cut(s) 74
BspHI TCATGA 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 116
BssMI GATC 2 cut(s) 20, 64
BssNI GRCGYC 2 cut(s) 5, 324
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 2 cut(s) 134, 243
BstACI GRCGYC 2 cut(s) 5, 324
BstC8I GCNNGC 1 cut(s) 201
BstF5I GGATG 1 cut(s) 291
BstKTI GATC 2 cut(s) 23, 67
BstMBI GATC 2 cut(s) 20, 64
BstMWI GCNNNNNNNGC 4 cut(s) 101, 113, 235, 269
BstSCI CCNGG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 116, 226
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 74
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 201
CciI TCATGA 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 74
CseI GACGC 1 cut(s) 313
CviAII CATG 1 cut(s) 26
CviJI RGCY 6 cut(s) 59, 83, 107, 199, 238, 245
CviKI_1 RGCY 6 cut(s) 59, 83, 107, 199, 238, 245
DpnI GATC 2 cut(s) 22, 66
DpnII GATC 2 cut(s) 20, 64
Eam1104I CTCTTC 2 cut(s) 134, 243
EarI CTCTTC 2 cut(s) 134, 243
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 1 cut(s) 29
FaiI YATR 2 cut(s) 27, 164
FatI CATG 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 105, 215
FokI GGATG 1 cut(s) 298
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 2 cut(s) 105, 215
FspBI CTAG 1 cut(s) 269
GluI GCNGC 2 cut(s) 105, 215
HapII CCGG 3 cut(s) 117, 158, 278
HgaI GACGC 1 cut(s) 313
Hin1I GRCGYC 2 cut(s) 5, 324
Hin1II CATG 1 cut(s) 29
HinfI GANTC 2 cut(s) 76, 329
HpaII CCGG 3 cut(s) 117, 158, 278
Hpy188I TCNGA 4 cut(s) 100, 136, 153, 242
Hpy188III TCNNGA 2 cut(s) 26, 62
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 117, 314
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 2 cut(s) 5, 301
HpyCH4V TGCA 2 cut(s) 263, 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 113, 235, 269
HpySE526I ACGT 2 cut(s) 5, 301
Hsp92I GRCGYC 2 cut(s) 5, 324
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 2 cut(s) 20, 64
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 6 cut(s) 54, 93, 130, 171, 185, 291
Lsp1109I GCAGC 2 cut(s) 116, 226
LweI GCATC 1 cut(s) 104
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 5, 301
MalI GATC 2 cut(s) 22, 66
MboI GATC 2 cut(s) 20, 64
MboII GAAGA 3 cut(s) 41, 151, 260
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 3 cut(s) 165, 307, 333
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 2 cut(s) 94, 244
MspI CCGG 3 cut(s) 117, 158, 278
MspR9I CCNGG 1 cut(s) 158
MunI CAATTG 1 cut(s) 333
MwoI GCNNNNNNNGC 4 cut(s) 101, 113, 235, 269
NciI CCSGG 1 cut(s) 158
NdeII GATC 2 cut(s) 20, 64
NlaIII CATG 1 cut(s) 29
PagI TCATGA 1 cut(s) 25
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 2 cut(s) 106, 216
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 20
SacI GAGCTC 1 cut(s) 240
SatI GCNGC 2 cut(s) 105, 215
Sau3AI GATC 2 cut(s) 20, 64
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 240
SetI ASST 8 cut(s) 8, 61, 85, 109, 201, 240, 247, 304
SfaNI GCATC 1 cut(s) 104
Sse9I AATT 3 cut(s) 165, 307, 333
SspMI CTAG 1 cut(s) 269
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 2 cut(s) 8, 304
TaqI TCGA 2 cut(s) 74, 327
TasI AATT 3 cut(s) 165, 307, 333
TfiI GAWTC 1 cut(s) 76
TscAI CASTG 1 cut(s) 48
TseI GCWGC 2 cut(s) 104, 214
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 1 cut(s) 48
XspI CTAG 1 cut(s) 269
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.