FvH4_2g16313

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Forward (+)
14228685 .. 14231264
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16313.t1

Sequence Viewer

Length: 768 bp
ATGGTGAAGAAGTCAATTCACAAGGTTATGAGAAATCTGAAGGGAATGAAAAACAGATCCACTTTCTCATCCGCCAACAAGGTCGACCAAGAAAATATCACCATTGTTAGCAAGCTGAGAGATGTTGAAACAATCACTCTCACAGTCTTTGAATCAGTGTTGTCCTTCATCTCTGGGCCAGAGTCAAAGCCTAGCAGCTGGTCTTTCGTTTCCAAAATTGTGCAGTCTAAGAGAATAGCCTGTGATGAAGAATCGAATGTAAATGAATTTACCGAGCTTCCCCTCAAGGCCACACCCCTCAATCAACAAACCTTGGCACAAGAGAAGCATCAGAAATGCGCTAATGAGCTATTAGATGGCTCCCTCAAGCTACTGGATGTTTGTAGCACTGCCAAGGATGCCCTGTTGCAAACCAAGGAGAAGATAGTGAAGAAGGCAATCCACAAGGCTATGAATTTGAAGGGAATGAAAACCTCTTCCCTCAACAATGACCAAGAGACTATCGCCATTGTTTCCAAGCTGGTCCTTGGTTTCCAAAATGATGCATTCCAAAGAATAGCTTGTGACGAGGAAGAAGTGAATGAGTTTGCAGAGGTGGATGTTGCATTGAAGTTACTCAAGAATGCAGACAATGCACAAAACCAGCTTAGCAATCTGGAGTCATGCATTCAAGATCAAGAAGAAGGACTTGAGAGCCTATTTAGGCAATTGATCAAAACAAGGGTCTCCCTTAAACCACTAGATATATCTTATAGAACAAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

256

Amino Acids

28.6

Weight (kDa)

7.59

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 2 - 92 3.8e-20 Protein BPS1
BPS1 PF03087 98 - 142 3.3e-14 Protein BPS1
BPS1 PF03087 154 - 244 2.6e-16 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 3 cut(s) 266, 454, 760
AcuI CTGAAG 1 cut(s) 59
AgsI TTSAA 5 cut(s) 128, 152, 460, 610, 671
AluBI AGCT 8 cut(s) 115, 198, 277, 349, 370, 520, 560, 646
AluI AGCT 8 cut(s) 115, 198, 277, 349, 370, 520, 560, 646
Alw26I GTCTC 2 cut(s) 491, 730
AlwI GGATC 1 cut(s) 51
AoxI GGCC 2 cut(s) 176, 288
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 3 cut(s) 266, 454, 760
ArsI GACNNNNNNTTYG 2 cut(s) 708, 740
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 2 cut(s) 176, 523
AsuHPI GGTGA 2 cut(s) 16, 91
AvaII GGWCC 1 cut(s) 523
BbvI GCAGC 1 cut(s) 207
BccI CCATC 1 cut(s) 350
BclI TGATCA 1 cut(s) 711
BcoDI GTCTC 2 cut(s) 491, 730
BfaI CTAG 2 cut(s) 192, 740
BisI GCNGC 1 cut(s) 196
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 523
BmgT120I GGNCC 2 cut(s) 176, 523
BmiI GGNNCC 1 cut(s) 361
BmsI GCATC 3 cut(s) 337, 388, 532
BpmI CTGGAG 1 cut(s) 677
Bpu1102I GCTNAGC 1 cut(s) 647
BpuEI CTTGAG 4 cut(s) 269, 350, 602, 710
BsaI GGTCTC 1 cut(s) 730
BsaJI CCNNGG 4 cut(s) 312, 393, 414, 526
Bse1I ACTGG 1 cut(s) 378
BseDI CCNNGG 4 cut(s) 312, 393, 414, 526
BseGI GGATG 4 cut(s) 68, 382, 403, 604
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 242
BshFI GGCC 2 cut(s) 178, 290
BsmAI GTCTC 2 cut(s) 491, 730
BsmI GAATGC 3 cut(s) 545, 628, 666
BsnI GGCC 2 cut(s) 178, 290
Bso31I GGTCTC 1 cut(s) 730
Bsp143I GATC 3 cut(s) 56, 673, 711
Bsp1720I GCTNAGC 1 cut(s) 647
BspACI CCGC 1 cut(s) 72
BspANI GGCC 2 cut(s) 178, 290
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 730
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 4 cut(s) 312, 393, 414, 526
BssMI GATC 3 cut(s) 56, 673, 711
BssT1I CCWWGG 4 cut(s) 312, 393, 414, 526
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 481
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 3 cut(s) 116, 228, 647
BstF5I GGATG 4 cut(s) 68, 382, 403, 604
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 3 cut(s) 59, 676, 714
BstMAI GTCTC 2 cut(s) 491, 730
BstMBI GATC 3 cut(s) 56, 673, 711
BstMWI GCNNNNNNNGC 2 cut(s) 398, 632
BstV1I GCAGC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 2 cut(s) 178, 290
BtsCI GGATG 4 cut(s) 68, 382, 403, 604
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 162, 387
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 176, 523
CviAII CATG 1 cut(s) 663
DdeI CTNAG 3 cut(s) 116, 228, 647
DpnI GATC 3 cut(s) 58, 675, 713
DpnII GATC 3 cut(s) 56, 673, 711
Eam1104I CTCTTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 481
EciI GGCGGA 1 cut(s) 61
Eco130I CCWWGG 4 cut(s) 312, 393, 414, 526
Eco31I GGTCTC 1 cut(s) 730
Eco47I GGWCC 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 59
EcoT14I CCWWGG 4 cut(s) 312, 393, 414, 526
EcoT22I ATGCAT 2 cut(s) 547, 668
ErhI CCWWGG 4 cut(s) 312, 393, 414, 526
FaeI CATG 1 cut(s) 666
FaiI YATR 5 cut(s) 29, 452, 664, 746, 753
FalI AAGNNNNNCTT 4 cut(s) 544, 576, 672, 704
FatI CATG 1 cut(s) 662
FbaI TGATCA 1 cut(s) 711
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 4 cut(s) 55, 389, 410, 611
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 2 cut(s) 192, 740
GlaI GCGC 1 cut(s) 340
GluI GCNGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 677
HaeIII GGCC 2 cut(s) 178, 290
HhaI GCGC 1 cut(s) 341
Hin1II CATG 1 cut(s) 666
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 4 cut(s) 152, 182, 251, 659
HphI GGTGA 2 cut(s) 16, 91
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 39, 333
Hpy188III TCNNGA 4 cut(s) 619, 656, 671, 677
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 5 cut(s) 34, 175, 427, 454, 677
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 8 cut(s) 223, 409, 545, 590, 605, 626, 635, 666
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 632
HpyF3I CTNAG 3 cut(s) 116, 228, 647
Hsp92II CATG 1 cut(s) 666
HspAI GCGC 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 3 cut(s) 56, 673, 711
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 9 cut(s) 159, 184, 192, 253, 359, 416, 506, 641, 656
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 3 cut(s) 337, 388, 532
MaeI CTAG 2 cut(s) 192, 740
MaeIII GTNAC 2 cut(s) 563, 612
MalI GATC 3 cut(s) 58, 675, 713
MboI GATC 3 cut(s) 56, 673, 711
MboII GAAGA 7 cut(s) 19, 260, 433, 442, 468, 584, 692
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 1 cut(s) 56
MluCI AATT 6 cut(s) 15, 216, 266, 454, 707, 760
MlyI GAGTC 2 cut(s) 191, 668
MnlI CCTC 7 cut(s) 293, 308, 374, 484, 491, 562, 586
Mph1103I ATGCAT 2 cut(s) 547, 668
MseI TTAA 1 cut(s) 732
MspA1I CMGCKG 1 cut(s) 198
MunI CAATTG 1 cut(s) 707
Mva1269I GAATGC 3 cut(s) 545, 628, 666
MwoI GCNNNNNNNGC 2 cut(s) 398, 632
NdeII GATC 3 cut(s) 56, 673, 711
NlaIII CATG 1 cut(s) 666
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 563
NsiI ATGCAT 2 cut(s) 547, 668
PctI GAATGC 3 cut(s) 545, 628, 666
PfeI GAWTC 2 cut(s) 152, 251
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 2 cut(s) 190, 667
PpsI GAGTC 2 cut(s) 190, 667
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 2 cut(s) 176, 523
PsuI RGATCY 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 198
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 56, 673, 711
Sau96I GGNCC 2 cut(s) 176, 523
SchI GAGTC 2 cut(s) 191, 668
SfaNI GCATC 3 cut(s) 337, 388, 532
SinI GGWCC 1 cut(s) 523
SmlI CTYRAG 4 cut(s) 284, 365, 617, 689
SmoI CTYRAG 4 cut(s) 284, 365, 617, 689
Sse9I AATT 6 cut(s) 15, 216, 266, 454, 707, 760
SsiI CCGC 1 cut(s) 72
SspMI CTAG 2 cut(s) 192, 740
StyI CCWWGG 4 cut(s) 312, 393, 414, 526
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 84, 254
TasI AATT 6 cut(s) 15, 216, 266, 454, 707, 760
TfiI GAWTC 2 cut(s) 152, 251
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TscAI CASTG 2 cut(s) 162, 394
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 6 cut(s) 62, 157, 261, 279, 467, 482
TspRI CASTG 2 cut(s) 162, 394
VpaK11BI GGWCC 1 cut(s) 523
XapI RAATTY 3 cut(s) 266, 454, 760
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 2 cut(s) 192, 740
Zsp2I ATGCAT 2 cut(s) 547, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.