MD02G1121100.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000199
Physical Location & Seq
Reverse (-)
9886828 .. 9887184
357 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1121100.v1.1.491

Sequence Viewer

Length: 357 bp
ATGGCTGCCAAACACCATGTTATTAGATCAATCAGCCTGCCCTCAAGGTCTCACCCTAATACTCTTAGGGTTGAAGAGGAGCTGAACAGGCTCCAAACATCGTCATCTTGTGATTCAACTTTAGACTCAATCTGCAAATCTCTATGTGGGCTAGACGAGTTGTATGAGTGTGTAGATGATCTTTTACAGATGGCATCAACCCAACAGCTCCTTTCTCAACACCAACAAAAGAAGTGCATGGATGAGTTGTTGGATGGATCACTCATGAGGCTCTTGGACATATGTGGCATCACAAGAGATGCCATTTCAACAATCAAGGAACATGTTAGAGATCTTCAATCTGCTCTTAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

119

Amino Acids

13.34

Weight (kDa)

5.91

Isoelectric Point (pI)

65.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 48 - 118 3.4e-28 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 265
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 4 cut(s) 74, 117, 309, 338
AluBI AGCT 2 cut(s) 82, 208
AluI AGCT 2 cut(s) 82, 208
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 5
AsuHPI GGTGA 1 cut(s) 44
BccI CCATC 2 cut(s) 184, 248
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 152
BglII AGATCT 1 cut(s) 331
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 92
BmsI GCATC 3 cut(s) 203, 289, 297
BpuEI CTTGAG 1 cut(s) 28
BsaI GGTCTC 1 cut(s) 54
BseGI GGATG 2 cut(s) 247, 259
BseRI GAGGAG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 54
Bsp143I GATC 4 cut(s) 26, 178, 257, 331
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 54
BssMI GATC 4 cut(s) 26, 178, 257, 331
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 65, 347
BstF5I GGATG 2 cut(s) 247, 259
BstKTI GATC 4 cut(s) 29, 181, 260, 334
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 4 cut(s) 26, 178, 257, 331
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BtsCI GGATG 2 cut(s) 247, 259
Cac8I GCNNGC 1 cut(s) 38
CciI TCATGA 1 cut(s) 264
CviAII CATG 4 cut(s) 17, 238, 265, 323
CviJI RGCY 7 cut(s) 5, 36, 82, 91, 151, 208, 271
CviKI_1 RGCY 7 cut(s) 5, 36, 82, 91, 151, 208, 271
DdeI CTNAG 2 cut(s) 65, 347
DpnI GATC 4 cut(s) 28, 180, 259, 333
DpnII GATC 4 cut(s) 26, 178, 257, 331
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 54
FaeI CATG 4 cut(s) 20, 241, 268, 326
FaiI YATR 8 cut(s) 18, 145, 165, 239, 266, 281, 283, 324
FatI CATG 4 cut(s) 16, 237, 264, 322
FauNDI CATATG 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 254, 266
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 152
GluI GCNGC 1 cut(s) 6
Hin1II CATG 4 cut(s) 20, 241, 268, 326
HinfI GANTC 2 cut(s) 113, 125
HphI GGTGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 135, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 2 cut(s) 65, 347
Hsp92II CATG 4 cut(s) 20, 241, 268, 326
Kzo9I GATC 4 cut(s) 26, 178, 257, 331
LmnI GCTCC 3 cut(s) 79, 96, 213
LpnPI CCDG 2 cut(s) 50, 73
LweI GCATC 3 cut(s) 203, 289, 297
MaeI CTAG 1 cut(s) 152
MalI GATC 4 cut(s) 28, 180, 259, 333
MboI GATC 4 cut(s) 26, 178, 257, 331
MboII GAAGA 2 cut(s) 86, 326
MflI RGATCY 1 cut(s) 331
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 4 cut(s) 52, 70, 261, 345
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeI CATATG 1 cut(s) 281
NdeII GATC 4 cut(s) 26, 178, 257, 331
NlaIII CATG 4 cut(s) 20, 241, 268, 326
NlaIV GGNNCC 1 cut(s) 92
NspI RCATGY 1 cut(s) 326
PagI TCATGA 1 cut(s) 264
PciI ACATGT 1 cut(s) 322
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PscI ACATGT 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 331
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 4 cut(s) 26, 178, 257, 331
SchI GAGTC 1 cut(s) 119
SetI ASST 4 cut(s) 50, 84, 210, 356
SfaNI GCATC 3 cut(s) 203, 289, 297
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SspMI CTAG 1 cut(s) 152
TfiI GAWTC 1 cut(s) 113
TseI GCWGC 1 cut(s) 5
XceI RCATGY 1 cut(s) 326
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.