FvH4_2g16203

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Reverse (-)
14171825 .. 14172783
959 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16203.t1

Sequence Viewer

Length: 837 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCTTCCAGGTCACACCCTCTCATTCAAGAAGTTGACGAACAATTGTGCAGATTGAGGTCTTCCGAAGCCAGCTCCACATCATCATCATCATCATCAATAAGCTACCAACTTCATGGTCTGCAAGACTTGCATGATTGTGTTGATAGGTTGCTTCAATTGCCACTCAACCAACAAGCCTTGGCGCAAGAGAAACATGGAAATTGGGCTAATGAACTATTAGATCGCTCTCTCAGGCTCTTGGATATTTGCAGCACTGCCAAAGATGCCTTGTTGCTAACCAAGGAATGCATTCAGAACCTTCAATCAATCATCCGAAGAAGAGGAGGAGAAGAATCTGATTTACTCGCCAGTGAAGTTAGGAAATACTTCAGCTCCAGGAAGATGGTGAAAAAGTCACTCCATAAGGCTATGGGGAATCTGAAGGGAATTGAAAACAAATACAATTTCTCTTCCCTCAGCAAGGACCAAGAGACAATCGCCATCATTAACAAGCTGAGAGACGTTGAAGCAGTCACACAAACAGTGTTTGAAGCAATATTGTCTTTTATCACTGGCCCAAAGGTATCAAGCAGCTGGTCATTTATATCCAAGAAGTTGCAGTCAAAAAGAGTAGCTTGTGAGGAAGAACAAGTAAACGAATTTGCAGAGGTTGATGCTGCATTGAAGTCACACAAGAGTTTAGACAATGCACAAAACCAGCTCAACAATCTGGAGACTTGCATTCAAGACCAAGAAGAAGGACTCGAGTGTCTATTTAGGCAATTGATAAAAACAAGAGTCTCCCTACTCAACATCCTCAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

279

Amino Acids

31.46

Weight (kDa)

7.08

Isoelectric Point (pI)

61.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 47 - 275 1.6e-82 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 777
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 2 cut(s) 382, 470
AfiI CCNNNNNNNGG 1 cut(s) 490
AgsI TTSAA 8 cut(s) 56, 185, 332, 461, 536, 560, 694, 755
AjnI CCWGG 2 cut(s) 35, 404
AluBI AGCT 8 cut(s) 27, 102, 132, 402, 523, 603, 644, 730
AluI AGCT 8 cut(s) 27, 102, 132, 402, 523, 603, 644, 730
Alw26I GTCTC 4 cut(s) 494, 522, 737, 814
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 1 cut(s) 583
ApeKI GCWGC 3 cut(s) 279, 600, 686
ApoI RAATTY 1 cut(s) 668
Asp700I GAANNNNTTC 2 cut(s) 318, 395
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 493, 584
AsuHPI GGTGA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 485
BbvI GCAGC 3 cut(s) 291, 612, 673
BccI CCATC 2 cut(s) 406, 518
BciT130I CCWGG 2 cut(s) 37, 406
BcoDI GTCTC 4 cut(s) 494, 522, 737, 814
BfaI CTAG 1 cut(s) 835
BisI GCNGC 3 cut(s) 280, 601, 687
BlsI GCNGC 3 cut(s) 281, 602, 688
Bme1390I CCNGG 2 cut(s) 37, 406
Bme18I GGWCC 1 cut(s) 493
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 2 cut(s) 493, 584
BmrFI CCNGG 2 cut(s) 37, 406
BmsI GCATC 2 cut(s) 283, 673
BpiI GAAGAC 1 cut(s) 81
BpmI CTGGAG 2 cut(s) 388, 761
Bpu10I CCTNAGC 1 cut(s) 485
BsaJI CCNNGG 2 cut(s) 207, 309
BsaXI ACNNNNNCTCC 2 cut(s) 386, 416
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 2 cut(s) 378, 586
BseBI CCWGG 2 cut(s) 37, 406
BseDI CCNNGG 2 cut(s) 207, 309
BseGI GGATG 2 cut(s) 339, 822
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMII CTCAG 3 cut(s) 274, 499, 515
BseNI ACTGG 2 cut(s) 378, 586
BseRI GAGGAG 2 cut(s) 366, 369
BseXI GCAGC 3 cut(s) 291, 612, 673
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 1 cut(s) 585
BsiHKCI CYCGRG 1 cut(s) 773
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 4 cut(s) 494, 522, 737, 814
BsmBI CGTCTC 1 cut(s) 522
BsmI GAATGC 3 cut(s) 318, 320, 750
BsnI GGCC 1 cut(s) 585
BsoBI CYCGRG 1 cut(s) 773
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 1 cut(s) 585
BspCNI CTCAG 3 cut(s) 273, 498, 516
BsrI ACTGG 2 cut(s) 378, 586
BssECI CCNNGG 2 cut(s) 207, 309
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 207, 309
Bst2UI CCWGG 2 cut(s) 37, 406
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 2 cut(s) 343, 484
BstAPI GCANNNNNTGC 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 3 cut(s) 260, 485, 524
BstENI CCTNNNNNAGG 1 cut(s) 488
BstF5I GGATG 2 cut(s) 339, 822
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 4 cut(s) 494, 522, 737, 814
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 4 cut(s) 24, 157, 187, 293
BstNI CCWGG 2 cut(s) 37, 406
BstSCI CCNGG 2 cut(s) 35, 404
BstV1I GCAGC 3 cut(s) 291, 612, 673
BstV2I GAAGAC 1 cut(s) 81
BstXI CCANNNNNNTGG 2 cut(s) 143, 412
BsuRI GGCC 1 cut(s) 585
BtsCI GGATG 2 cut(s) 339, 822
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 4 cut(s) 282, 385, 558, 579
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 493, 584
CviAII CATG 3 cut(s) 143, 161, 224
DdeI CTNAG 3 cut(s) 260, 485, 524
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
DrdI GACNNNNNNGTC 1 cut(s) 777
DseDI GACNNNNNNGTC 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 343, 484
EarI CTCTTC 2 cut(s) 343, 484
Eco130I CCWWGG 2 cut(s) 207, 309
Eco47I GGWCC 1 cut(s) 493
Eco57I CTGAAG 2 cut(s) 382, 470
Eco88I CYCGRG 1 cut(s) 773
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 35, 404
EcoT14I CCWWGG 2 cut(s) 207, 309
EcoT22I ATGCAT 1 cut(s) 320
ErhI CCWWGG 2 cut(s) 207, 309
Esp3I CGTCTC 1 cut(s) 522
FaeI CATG 3 cut(s) 146, 164, 227
FaiI YATR 6 cut(s) 144, 162, 225, 432, 440, 614
FalI AAGNNNNNCTT 2 cut(s) 628, 660
FatI CATG 3 cut(s) 142, 160, 223
Fnu4HI GCNGC 3 cut(s) 280, 601, 687
FokI GGATG 2 cut(s) 326, 809
Fsp4HI GCNGC 3 cut(s) 280, 601, 687
FspBI CTAG 1 cut(s) 835
GlaI GCGC 1 cut(s) 213
GluI GCNGC 3 cut(s) 280, 601, 687
GsuI CTGGAG 2 cut(s) 388, 761
HaeIII GGCC 1 cut(s) 585
HhaI GCGC 1 cut(s) 214
Hin1II CATG 3 cut(s) 146, 164, 227
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 4 cut(s) 362, 445, 771, 807
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 2 cut(s) 64, 664
Hpy188I TCNGA 5 cut(s) 94, 324, 344, 367, 450
Hpy188III TCNNGA 3 cut(s) 56, 740, 755
Hpy8I GTNNAC 2 cut(s) 64, 664
HpyAV CCTTC 4 cut(s) 42, 338, 445, 761
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 1 cut(s) 531
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 157, 187, 293
HpyF3I CTNAG 3 cut(s) 260, 485, 524
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 3 cut(s) 146, 164, 227
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 107, 407
Lsp1109I GCAGC 3 cut(s) 291, 612, 673
LweI GCATC 2 cut(s) 283, 673
MaeI CTAG 1 cut(s) 835
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 4 cut(s) 39, 423, 541, 696
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 8 cut(s) 81, 357, 360, 371, 421, 471, 665, 776
MfeI CAATTG 3 cut(s) 71, 185, 791
MluCI AATT 7 cut(s) 71, 185, 229, 456, 472, 668, 791
MlyI GAGTC 2 cut(s) 765, 816
MnlI CCTC 8 cut(s) 57, 78, 344, 347, 494, 643, 670, 836
Mph1103I ATGCAT 1 cut(s) 320
MroXI GAANNNNTTC 2 cut(s) 318, 395
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 603
MspR9I CCNGG 2 cut(s) 37, 406
MunI CAATTG 3 cut(s) 71, 185, 791
Mva1269I GAATGC 3 cut(s) 318, 320, 750
MvaI CCWGG 2 cut(s) 37, 406
MwoI GCNNNNNNNGC 4 cut(s) 24, 157, 187, 293
NdeII GATC 1 cut(s) 250
NlaIII CATG 3 cut(s) 146, 164, 227
NmuCI GTSAC 4 cut(s) 39, 423, 541, 696
NsiI ATGCAT 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 773
PctI GAATGC 3 cut(s) 318, 320, 750
PdmI GAANNNNTTC 2 cut(s) 318, 395
PfeI GAWTC 2 cut(s) 362, 445
PfoI TCCNGGA 1 cut(s) 404
PkrI GCNGC 3 cut(s) 281, 602, 688
PleI GAGTC 2 cut(s) 765, 815
PpsI GAGTC 2 cut(s) 765, 815
Psp6I CCWGG 2 cut(s) 35, 404
PspGI CCWGG 2 cut(s) 35, 404
PspPI GGNCC 2 cut(s) 493, 584
PspXI VCTCGAGB 1 cut(s) 773
PvuII CAGCTG 1 cut(s) 603
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 3 cut(s) 280, 601, 687
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 2 cut(s) 493, 584
SchI GAGTC 2 cut(s) 765, 816
ScrFI CCNGG 2 cut(s) 37, 406
SfaNI GCATC 2 cut(s) 283, 673
Sfr274I CTCGAG 1 cut(s) 773
SinI GGWCC 1 cut(s) 493
SlaI CTCGAG 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 7 cut(s) 71, 185, 229, 456, 472, 668, 791
SspI AATATT 1 cut(s) 567
SspMI CTAG 1 cut(s) 835
StyD4I CCNGG 2 cut(s) 35, 404
StyI CCWWGG 2 cut(s) 207, 309
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 1 cut(s) 534
TaqI TCGA 1 cut(s) 774
TasI AATT 7 cut(s) 71, 185, 229, 456, 472, 668, 791
TfiI GAWTC 2 cut(s) 362, 445
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 4 cut(s) 289, 385, 558, 586
TseFI GTSAC 4 cut(s) 39, 423, 541, 696
TseI GCWGC 3 cut(s) 279, 600, 686
Tsp45I GTSAC 4 cut(s) 39, 423, 541, 696
TspDTI ATGAA 2 cut(s) 131, 255
TspRI CASTG 4 cut(s) 289, 385, 558, 586
VpaK11BI GGWCC 1 cut(s) 493
XagI CCTNNNNNAGG 1 cut(s) 488
XapI RAATTY 1 cut(s) 668
XhoI CTCGAG 1 cut(s) 773
XmnI GAANNNNTTC 2 cut(s) 318, 395
XspI CTAG 1 cut(s) 835
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.