MD05G1131000.v1.1

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000199
Physical Location & Seq
Forward (+)
25621085 .. 25621909
825 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1131000.v1.1.491

Sequence Viewer

Length: 825 bp
ATGGCTTTCCACACTCGCTCTAACAGCTTCCCCTCAAGGCCACACGTGATCGTTCATGAAGCCGATCAACACTTGTGCAGATTGAGGTCTTCTGAGGCCACCTGCACATCATCATCATCTATCAGCGACAAGCTAAGTGGCCTCCAAGACTTGCATTATTGTACGGAGAATTTGCTTCAGTTGCCCCTCTCTCAACAGGCCTTGTCCCAAGAGCAGAATGACAAATATGCTAATGAGCTATTAGATGGCTCTATCAGACTCTTGGAGGTTTGTGGCACTGCCAAGGATTCCCTGTCGCAAAGCAAGGAATGCATACAGGATCTTCAGTCAATCATAAGAAGGCGGGGAGGTGAATCTGCACTCACAAGTGAGGTCAGGAAATACATGGCCTCTAGGAAGATGGTGAAGAAGGCAATCCACAAGGCTATGGTAAATCTGAAGGGAATGAAAAATAGATCAGCTTTCTCTTCCCTCAACAACGACAATGAGACAGTTGCCATTATTAGCAAGTTGAGAGACGTTGAAGCAGTCACTCTCGCAGTCTTTGAATCACTTTTGTCCTTCATTTCTGGGCCAAAGTTACAGCCAAGTAGCTGGTCATTGGTCTCAAAGATGATGCAGTCGAAAAGAATGGCTTGTAACGAAGAAACAGAAGGCAATGAATTTTCACTAGTTGATGCTGCACTGCACAAAAGTGCAGATAAAGCGCAGAACCAACTTGAGAAGCTAGAGTCGTGTATTCAAGAGCAGGAAGAAGGACTAGAGTGCCTATTTAGGCAACTCATCAAAACAAGAGTCTCCCTCCTCAACATCCTAAATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

275

Amino Acids

30.66

Weight (kDa)

7.61

Isoelectric Point (pI)

72.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 271 2.1e-86 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 110
AciI CCGC 1 cut(s) 343
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 2 cut(s) 169, 662
AcuI CTGAAG 3 cut(s) 161, 308, 458
AcvI CACGTG 1 cut(s) 46
AfaI GTAC 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 3 cut(s) 524, 548, 743
AhlI ACTAGT 1 cut(s) 670
AleI CACNNNNGTG 1 cut(s) 693
AluBI AGCT 6 cut(s) 27, 133, 238, 461, 594, 727
AluI AGCT 6 cut(s) 27, 133, 238, 461, 594, 727
Alw26I GTCTC 4 cut(s) 482, 510, 610, 802
AlwI GGATC 1 cut(s) 327
AoxI GGCC 6 cut(s) 38, 96, 139, 198, 387, 572
ApeKI GCWGC 1 cut(s) 680
ApoI RAATTY 2 cut(s) 169, 662
ArsI GACNNNNNNTTYG 2 cut(s) 780, 812
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 362, 415
BbrPI CACGTG 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 667
BccI CCATC 2 cut(s) 239, 394
BcoDI GTCTC 4 cut(s) 482, 510, 610, 802
BcuI ACTAGT 1 cut(s) 670
BfaI CTAG 5 cut(s) 393, 671, 728, 761, 823
BfuAI ACCTGC 1 cut(s) 110
BisI GCNGC 1 cut(s) 681
BlsI GCNGC 1 cut(s) 682
BmgT120I GGNCC 1 cut(s) 572
BmsI GCATC 2 cut(s) 606, 667
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 786, 818
BpuEI CTTGAG 2 cut(s) 19, 740
BsaAI YACGTR 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 664
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 810
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 794
BseXI GCAGC 1 cut(s) 667
BsgI GTGCAG 6 cut(s) 88, 97, 342, 666, 671, 717
BshFI GGCC 6 cut(s) 40, 98, 141, 200, 389, 574
BslFI GGGAC 1 cut(s) 190
BsmAI GTCTC 4 cut(s) 482, 510, 610, 802
BsmBI CGTCTC 1 cut(s) 510
BsmFI GGGAC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 6 cut(s) 40, 98, 141, 200, 389, 574
Bso31I GGTCTC 1 cut(s) 610
Bsp143I GATC 4 cut(s) 48, 64, 319, 455
BspACI CCGC 1 cut(s) 343
BspANI GGCC 6 cut(s) 40, 98, 141, 200, 389, 574
BspCNI CTCAG 1 cut(s) 85
BspHI TCATGA 1 cut(s) 55
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 327
BspTNI GGTCTC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 664
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 4 cut(s) 48, 64, 319, 455
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 1 cut(s) 472
BstAPI GCANNNNNTGC 1 cut(s) 309
BstBAI YACGTR 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 93, 134
BstF5I GGATG 1 cut(s) 810
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 4 cut(s) 51, 67, 322, 458
BstMAI GTCTC 4 cut(s) 482, 510, 610, 802
BstMBI GATC 4 cut(s) 48, 64, 319, 455
BstMWI GCNNNNNNNGC 4 cut(s) 24, 181, 309, 704
BstV1I GCAGC 1 cut(s) 667
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 594
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 6 cut(s) 40, 98, 141, 200, 389, 574
BtsCI GGATG 1 cut(s) 810
BtsI GCAGTG 2 cut(s) 276, 683
BtsIMutI CAGTG 2 cut(s) 276, 683
BveI ACCTGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 55
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 572
Csp6I GTAC 1 cut(s) 162
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 2 cut(s) 56, 385
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 2 cut(s) 93, 134
DpnI GATC 4 cut(s) 50, 66, 321, 457
DpnII GATC 4 cut(s) 48, 64, 319, 455
Eam1104I CTCTTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 610
Eco57I CTGAAG 3 cut(s) 161, 308, 458
Eco72I CACGTG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 2 cut(s) 59, 388
FaiI YATR 6 cut(s) 57, 228, 314, 335, 386, 428
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FaqI GGGAC 1 cut(s) 190
FatI CATG 2 cut(s) 55, 384
FauI CCCGC 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 681
FokI GGATG 1 cut(s) 797
Fsp4HI GCNGC 1 cut(s) 681
FspBI CTAG 5 cut(s) 393, 671, 728, 761, 823
GlaI GCGC 1 cut(s) 708
GluI GCNGC 1 cut(s) 681
HaeIII GGCC 6 cut(s) 40, 98, 141, 200, 389, 574
HhaI GCGC 1 cut(s) 709
Hin1II CATG 2 cut(s) 59, 388
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HinfI GANTC 6 cut(s) 258, 287, 353, 548, 731, 795
HphI GGTGA 2 cut(s) 362, 415
Hpy188I TCNGA 3 cut(s) 94, 257, 438
Hpy188III TCNNGA 3 cut(s) 56, 376, 743
HpyAV CCTTC 6 cut(s) 333, 403, 433, 571, 647, 749
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 2 cut(s) 45, 519
HpyCH4V TGCA 9 cut(s) 78, 105, 154, 312, 359, 619, 683, 688, 698
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 181, 309, 704
HpyF3I CTNAG 2 cut(s) 93, 134
HpySE526I ACGT 2 cut(s) 45, 519
Hsp92II CATG 2 cut(s) 59, 388
HspAI GCGC 1 cut(s) 707
Kzo9I GATC 4 cut(s) 48, 64, 319, 455
LpnPI CCDG 8 cut(s) 115, 182, 302, 305, 361, 555, 580, 734
Lsp1109I GCAGC 1 cut(s) 667
LweI GCATC 2 cut(s) 606, 667
MaeI CTAG 5 cut(s) 393, 671, 728, 761, 823
MaeII ACGT 2 cut(s) 45, 519
MaeIII GTNAC 3 cut(s) 529, 579, 638
MalI GATC 4 cut(s) 50, 66, 321, 457
MboI GATC 4 cut(s) 48, 64, 319, 455
MboII GAAGA 7 cut(s) 81, 314, 409, 418, 459, 656, 764
MflI RGATCY 1 cut(s) 319
MluCI AATT 2 cut(s) 169, 662
MlyI GAGTC 3 cut(s) 252, 740, 804
Mph1103I ATGCAT 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 314
MwoI GCNNNNNNNGC 4 cut(s) 24, 181, 309, 704
NdeII GATC 4 cut(s) 48, 64, 319, 455
NlaIII CATG 2 cut(s) 59, 388
NmuCI GTSAC 1 cut(s) 529
NsiI ATGCAT 1 cut(s) 314
OliI CACNNNNGTG 1 cut(s) 693
PagI TCATGA 1 cut(s) 55
PaqCI CACCTGC 1 cut(s) 110
PceI AGGCCT 1 cut(s) 200
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 3 cut(s) 287, 353, 548
PkrI GCNGC 1 cut(s) 682
PleI GAGTC 3 cut(s) 252, 739, 803
PmaCI CACGTG 1 cut(s) 46
PmlI CACGTG 1 cut(s) 46
PpsI GAGTC 3 cut(s) 252, 739, 803
Ppu21I YACGTR 1 cut(s) 46
PspCI CACGTG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 572
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 693
SatI GCNGC 1 cut(s) 681
Sau3AI GATC 4 cut(s) 48, 64, 319, 455
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 3 cut(s) 252, 740, 804
SfaNI GCATC 2 cut(s) 606, 667
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 34, 719
SmoI CTYRAG 2 cut(s) 34, 719
SpeI ACTAGT 1 cut(s) 670
Sse9I AATT 2 cut(s) 169, 662
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 1 cut(s) 343
SspMI CTAG 5 cut(s) 393, 671, 728, 761, 823
StuI AGGCCT 1 cut(s) 200
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 2 cut(s) 48, 522
TaqI TCGA 1 cut(s) 623
TasI AATT 2 cut(s) 169, 662
TfiI GAWTC 3 cut(s) 287, 353, 548
TscAI CASTG 2 cut(s) 283, 690
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 5 cut(s) 44, 72, 461, 553, 675
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 2 cut(s) 283, 690
XapI RAATTY 2 cut(s) 169, 662
XspI CTAG 5 cut(s) 393, 671, 728, 761, 823
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.