RLG00000013106

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000199
Physical Location & Seq
Forward (+)
26269639 .. 26270547
909 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013106

Sequence Viewer

Length: 909 bp
ATGGCTGCAGCTTCACCTTTAAACCCTAAAGCCAACTACCATATTCGATCTATCAGCTTGCCTTCAAAACCGCACCCGCTATTTCAACAATGTGAAGATTATTTGTTGAGAATAATAGCTTCTTCTGATGCCAATTCCTCCTCATCATCAGCCATAAGCAACAAGTTGAGCTGCCTTCTCGATTTGCACAACTGTGTGAATGAGTTGTTTCAGTTGCCCCTAACCCAAGAAGCCTTTGTTCGGGAGCGAAATGAGAAATGGGTCGATGAGCTCTTGGATAGATCCCTCAGGCTCCTGGATGTGTGCACAGCAGCCAAGGATGCCTTGATACACACCAAGGAATGCGCACGCGAAATTCAATCCACCATGCGCAGACGAAGGGGAGGCCAAAGCGGGTTCACAAACGAGGTCAAGAAGTACTTTGCCTCAAGAAAAGTGGTGAAGAAAGCAATCTGCAAGGCCCTTGTGACTTTGAAGAGTTGCGAGAAAAAGTCCAGCTTCTCTTCCACCAACAAAGACAACGTAGCTGTGGCCTTGGTTAGTGTATTGAGGGAGGTTGAAGCAGTTTCTCTCACGGTGTTCGATTCCCTCTTGTCATTCATCTCCGGATCAAAGGCACAATCGAAGATGAGGGGCTGGTCTTTCGTTTCCAAGATAATGCTCAACAAAAAAGTTGCTTGTGACGAAGAGAAATCGGAACTAAACGAATTTGCTGATGTGGATGCTGCATTAAGCTGCCTTGTTGGCCAAGAAACAAGCAAATCAGACAACATCTCCTGCAACGAGGATGTGCAAAGCGATCTGCAACAATTGGAATCATGCAGTCAAGATCTAGAAGAAGGACTCGAGTGTCTGTTCCGACGACTAATTAAGAATAGAGTTTCCCTTCTCAACACCCTTAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

303

Amino Acids

33.64

Weight (kDa)

8.21

Isoelectric Point (pI)

62.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 55 - 298 6.1e-85 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 849
Acc16I TGCGCA 2 cut(s) 346, 371
AccII CGCG 1 cut(s) 351
AccIII TCCGGA 1 cut(s) 605
AciI CCGC 3 cut(s) 71, 77, 393
AclWI GGATC 2 cut(s) 276, 616
AcoI YGGCCR 1 cut(s) 745
AcsI RAATTY 2 cut(s) 354, 707
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 5 cut(s) 66, 86, 359, 475, 560
AjnI CCWGG 1 cut(s) 294
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 8 cut(s) 11, 57, 119, 171, 271, 498, 527, 735
AluI AGCT 8 cut(s) 11, 57, 119, 171, 271, 498, 527, 735
Alw21I GWGCWC 2 cut(s) 273, 308
Alw44I GTGCAC 1 cut(s) 304
AlwI GGATC 2 cut(s) 276, 616
Ama87I CYCGRG 1 cut(s) 845
Aor13HI TCCGGA 1 cut(s) 605
AoxI GGCC 4 cut(s) 385, 459, 531, 745
ApaLI GTGCAC 1 cut(s) 304
ApeKI GCWGC 6 cut(s) 5, 8, 171, 311, 725, 735
ApoI RAATTY 2 cut(s) 354, 707
AspLEI GCGC 2 cut(s) 347, 372
AspS9I GGNCC 1 cut(s) 460
AsuHPI GGTGA 2 cut(s) 6, 451
AvaI CYCGRG 1 cut(s) 845
AxyI CCTNAGG 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 308
BalI TGGCCA 1 cut(s) 747
BanII GRGCYC 1 cut(s) 273
Bbv12I GWGCWC 2 cut(s) 273, 308
BbvI GCAGC 5 cut(s) 20, 158, 323, 712, 722
BciT130I CCWGG 1 cut(s) 296
BfaI CTAG 1 cut(s) 833
BfmI CTRYAG 1 cut(s) 6
BglI GCCNNNNNGGC 1 cut(s) 744
BglII AGATCT 1 cut(s) 829
BisI GCNGC 6 cut(s) 6, 9, 172, 312, 726, 736
BlsI GCNGC 6 cut(s) 7, 10, 173, 313, 727, 737
BmcAI AGTACT 1 cut(s) 419
Bme1390I CCNGG 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 3 cut(s) 118, 310, 712
BpuEI CTTGAG 1 cut(s) 412
BsaJI CCNNGG 3 cut(s) 315, 336, 534
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 287
BseAI TCCGGA 1 cut(s) 605
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 3 cut(s) 315, 336, 534
BseGI GGATG 4 cut(s) 304, 325, 727, 793
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 5 cut(s) 20, 158, 323, 712, 722
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 4 cut(s) 387, 461, 533, 747
BsiHKAI GWGCWC 2 cut(s) 273, 308
BsiHKCI CYCGRG 1 cut(s) 845
BsiSI CCGG 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 240
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 4 cut(s) 387, 461, 533, 747
BsoBI CYCGRG 1 cut(s) 845
Bsp1286I GDGCHC 2 cut(s) 273, 308
Bsp13I TCCGGA 1 cut(s) 605
Bsp143I GATC 5 cut(s) 47, 281, 608, 799, 829
BspACI CCGC 3 cut(s) 71, 77, 393
BspANI GGCC 4 cut(s) 387, 461, 533, 747
BspCNI CTCAG 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 605
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 293
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 276, 616
BssECI CCNNGG 3 cut(s) 315, 336, 534
BssMI GATC 5 cut(s) 47, 281, 608, 799, 829
BssT1I CCWWGG 3 cut(s) 315, 336, 534
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 194, 577
Bst6I CTCTTC 3 cut(s) 470, 508, 681
BstC8I GCNNGC 2 cut(s) 59, 349
BstDEI CTNAG 2 cut(s) 287, 899
BstF5I GGATG 4 cut(s) 304, 325, 727, 793
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 2 cut(s) 347, 372
BstKTI GATC 5 cut(s) 50, 284, 611, 802, 832
BstMBI GATC 5 cut(s) 47, 281, 608, 799, 829
BstMWI GCNNNNNNNGC 2 cut(s) 320, 744
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 308
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 5 cut(s) 20, 158, 323, 712, 722
BstX2I RGATCY 2 cut(s) 281, 829
BstYI RGATCY 2 cut(s) 281, 829
Bsu36I CCTNAGG 1 cut(s) 287
BsuRI GGCC 4 cut(s) 387, 461, 533, 747
BtsCI GGATG 4 cut(s) 304, 325, 727, 793
Cac8I GCNNGC 2 cut(s) 59, 349
CfoI GCGC 2 cut(s) 347, 372
Cfr13I GGNCC 1 cut(s) 460
Csp6I GTAC 1 cut(s) 418
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 2 cut(s) 367, 819
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 287, 899
DpnI GATC 5 cut(s) 49, 283, 610, 801, 831
DpnII GATC 5 cut(s) 47, 281, 608, 799, 829
DraI TTTAAA 1 cut(s) 21
DrdI GACNNNNNNGTC 1 cut(s) 849
DseDI GACNNNNNNGTC 1 cut(s) 849
EaeI YGGCCR 1 cut(s) 745
Eam1104I CTCTTC 3 cut(s) 470, 508, 681
EarI CTCTTC 3 cut(s) 470, 508, 681
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 3 cut(s) 315, 336, 534
Eco24I GRGCYC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 271
Eco81I CCTNAGG 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 845
EcoICRI GAGCTC 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 3 cut(s) 315, 336, 534
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 3 cut(s) 315, 336, 534
FaeI CATG 2 cut(s) 370, 822
FaiI YATR 4 cut(s) 42, 155, 368, 820
FalI AAGNNNNNCTT 6 cut(s) 308, 340, 404, 436, 482, 514
FatI CATG 2 cut(s) 366, 818
FauI CCCGC 2 cut(s) 84, 386
Fnu4HI GCNGC 6 cut(s) 6, 9, 172, 312, 726, 736
FokI GGATG 4 cut(s) 311, 332, 734, 800
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 6 cut(s) 6, 9, 172, 312, 726, 736
FspAI RTGCGCAY 1 cut(s) 346
FspBI CTAG 1 cut(s) 833
FspI TGCGCA 2 cut(s) 346, 371
GlaI GCGC 2 cut(s) 346, 371
GluI GCNGC 6 cut(s) 6, 9, 172, 312, 726, 736
HaeIII GGCC 4 cut(s) 387, 461, 533, 747
HapII CCGG 1 cut(s) 606
HhaI GCGC 2 cut(s) 347, 372
Hin1II CATG 2 cut(s) 370, 822
Hin6I GCGC 2 cut(s) 345, 370
HinP1I GCGC 2 cut(s) 345, 370
HinfI GANTC 3 cut(s) 584, 815, 843
HpaII CCGG 1 cut(s) 606
HphI GGTGA 2 cut(s) 6, 451
Hpy166II GTNNAC 2 cut(s) 306, 399
Hpy188I TCNGA 4 cut(s) 127, 697, 766, 860
Hpy188III TCNNGA 7 cut(s) 179, 242, 412, 429, 606, 827, 833
Hpy8I GTNNAC 2 cut(s) 306, 399
Hpy99I CGWCG 1 cut(s) 864
HpyAV CCTTC 5 cut(s) 72, 185, 372, 833, 896
HpyCH4III ACNGT 2 cut(s) 194, 577
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 9 cut(s) 8, 187, 306, 456, 728, 780, 793, 805, 822
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 744
HpyF3I CTNAG 2 cut(s) 287, 899
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 2 cut(s) 370, 822
HspAI GCGC 2 cut(s) 345, 370
Kpn2I TCCGGA 1 cut(s) 605
Kzo9I GATC 5 cut(s) 47, 281, 608, 799, 829
LmnI GCTCC 2 cut(s) 244, 297
LpnPI CCDG 7 cut(s) 274, 281, 308, 508, 619, 622, 790
Lsp1109I GCAGC 5 cut(s) 20, 158, 323, 712, 722
LweI GCATC 3 cut(s) 118, 310, 712
MaeI CTAG 1 cut(s) 833
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 2 cut(s) 466, 680
MalI GATC 5 cut(s) 49, 283, 610, 801, 831
MboI GATC 5 cut(s) 47, 281, 608, 799, 829
MboII GAAGA 8 cut(s) 107, 114, 454, 487, 495, 637, 698, 848
MfeI CAATTG 1 cut(s) 809
MflI RGATCY 2 cut(s) 281, 829
MhlI GDGCHC 2 cut(s) 273, 308
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 6 cut(s) 133, 354, 707, 809, 867, 904
MluNI TGGCCA 1 cut(s) 747
MlyI GAGTC 1 cut(s) 837
MmeI TCCRAC 1 cut(s) 883
Mox20I TGGCCA 1 cut(s) 747
MroI TCCGGA 1 cut(s) 605
MscI TGGCCA 1 cut(s) 747
MseI TTAA 4 cut(s) 20, 731, 870, 907
MslI CAYNNNNRTG 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 747
MspI CCGG 1 cut(s) 606
MspR9I CCNGG 1 cut(s) 296
MunI CAATTG 1 cut(s) 809
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 2 cut(s) 320, 744
NdeII GATC 5 cut(s) 47, 281, 608, 799, 829
NlaIII CATG 2 cut(s) 370, 822
NlaIV GGNNCC 1 cut(s) 293
NmuCI GTSAC 2 cut(s) 466, 680
NsbI TGCGCA 2 cut(s) 346, 371
OliI CACNNNNGTG 1 cut(s) 192
PaeR7I CTCGAG 1 cut(s) 845
PctI GAATGC 1 cut(s) 347
PfeI GAWTC 2 cut(s) 584, 815
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 6 cut(s) 7, 10, 173, 313, 727, 737
PleI GAGTC 1 cut(s) 837
PpsI GAGTC 1 cut(s) 837
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 460
PspXI VCTCGAGB 1 cut(s) 845
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 2 cut(s) 281, 829
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 192
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 4 cut(s) 20, 731, 870, 907
SatI GCNGC 6 cut(s) 6, 9, 172, 312, 726, 736
Sau3AI GATC 5 cut(s) 47, 281, 608, 799, 829
Sau96I GGNCC 1 cut(s) 460
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 1 cut(s) 837
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 273, 308
SfaNI GCATC 3 cut(s) 118, 310, 712
SfcI CTRYAG 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 845
SlaI CTCGAG 1 cut(s) 845
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 427, 845
SmoI CTYRAG 2 cut(s) 427, 845
Sse9I AATT 6 cut(s) 133, 354, 707, 809, 867, 904
SsiI CCGC 3 cut(s) 71, 77, 393
SspMI CTAG 1 cut(s) 833
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 3 cut(s) 315, 336, 534
TaaI ACNGT 2 cut(s) 194, 577
TaiI ACGT 1 cut(s) 525
TaqI TCGA 6 cut(s) 46, 180, 264, 582, 623, 846
TasI AATT 6 cut(s) 133, 354, 707, 809, 867, 904
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 2 cut(s) 584, 815
Tru1I TTAA 4 cut(s) 20, 731, 870, 907
Tru9I TTAA 4 cut(s) 20, 731, 870, 907
TseFI GTSAC 2 cut(s) 466, 680
TseI GCWGC 6 cut(s) 5, 8, 171, 311, 725, 735
Tsp45I GTSAC 2 cut(s) 466, 680
TspDTI ATGAA 1 cut(s) 589
VneI GTGCAC 1 cut(s) 304
XapI RAATTY 2 cut(s) 354, 707
XbaI TCTAGA 1 cut(s) 832
XhoI CTCGAG 1 cut(s) 845
XspI CTAG 1 cut(s) 833
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.