MD05G1130800.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000199
Physical Location & Seq
Reverse (-)
25584775 .. 25585686
912 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1130800.v1.1.491

Sequence Viewer

Length: 912 bp
ATGGCTTCAGCCTCATCTTTAAACTCTAAATCCAACTACCATATTCGTTCGATCAGCTTGCCTTCAAAACCACACCCACTATTTCAACAATGTGAAGATCATTTGTTGAGAATAGCAGCTTCTGATGTCTCCTCTTCGTTTTCATCATCATCGATAAGCCACAGATTGAGTAGCCTTTTGGATTTGCACAACTGTGTGAATGAGTTGTTTCAGTTGCCCCTCACCCAAGAAGCTTTTGTCCGGGAGCGAAATGAGAAATGGGTGGATGAGCTTTTGGATGGTTCTCTAAGGCTCTTGGATGTGTGTACAGCAGCCAAAGATGCCTTGATACACACAAAGGAATGTGTACGTGAAATTCAATCGATCATGCGCAGAAGAAGGGGAGGCATAAGTGGGTTCACTAACGAGGTTAGGAAATACTCAGCCTCAAGGAAGGTGGTCAAGAAGGCTATCTGCAAGGCCCTGGGGACTTTGAGGAGTTCTCAGAAGAAAGGCACCTTCTCTTCCACGAACAAAGACAATGTAGCCGTGGCTTTAATTGGTGCGTTGAGAGAGGTTGAAGCAGTCACTCTCACAGTGTTTGAGTCCCTTTTGTCCTTCATCTCCGGAGCAAAGTCACAATCAAAGATGAGTGGCTGGTCTTTCGTTTCAAAGCTTATGCTTACCAAAAAGGTTGCTTGTGATGAAGAAGATAAAGCCGATTTAAATGAGTTTGCTGATGTAGATGCTGCACTGAACTCCCTTTCATGTCAAGAGGCAAGCAAATCTGACAACGTGGTCGACAGTGAGAATGTGCAAAGCGAGCTGCAACAATTGGAACTTTGCAGTCAGGATCTTGAAGAAGGACTCGAAGGTCTGTTCAGGCGATTAATCAAAAATAGAGTTTCCCTTCTTAATACTCTCAGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

304

Amino Acids

33.52

Weight (kDa)

7.58

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 56 - 299 4.2e-85 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 776, 852
Acc16I TGCGCA 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 494
AccI GTMKAC 1 cut(s) 780
AccIII TCCGGA 1 cut(s) 605
AclWI GGATC 1 cut(s) 840
AcsI RAATTY 1 cut(s) 354
AfaI GTAC 2 cut(s) 307, 348
AgsI TTSAA 6 cut(s) 66, 86, 359, 560, 651, 839
AjnI CCWGG 1 cut(s) 462
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 6 cut(s) 57, 119, 233, 271, 655, 805
AluI AGCT 6 cut(s) 57, 119, 233, 271, 655, 805
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 840
AlwNI CAGNNNCTG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 605
AoxI GGCC 1 cut(s) 459
ApeKI GCWGC 4 cut(s) 116, 311, 728, 805
ApoI RAATTY 1 cut(s) 354
AseI ATTAAT 1 cut(s) 869
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 460
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 494
BbvI GCAGC 4 cut(s) 128, 323, 715, 792
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 512
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 1 cut(s) 464
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 133
BisI GCNGC 4 cut(s) 117, 312, 729, 806
BlsI GCNGC 4 cut(s) 118, 313, 730, 807
Bme1390I CCNGG 2 cut(s) 242, 464
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 496
BmrFI CCNGG 2 cut(s) 242, 464
BmsI GCATC 2 cut(s) 310, 715
BplI GAGNNNNNCTC 2 cut(s) 466, 498
BpuEI CTTGAG 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 242
Bsa29I ATCGAT 2 cut(s) 152, 362
BsaAI YACGTR 1 cut(s) 350
BsaJI CCNNGG 3 cut(s) 462, 463, 528
BsaWI WCCGGW 1 cut(s) 605
BseAI TCCGGA 1 cut(s) 605
BseBI CCWGG 1 cut(s) 464
BseCI ATCGAT 2 cut(s) 152, 362
BseDI CCNNGG 3 cut(s) 462, 463, 528
BseGI GGATG 3 cut(s) 271, 283, 304
BseMII CTCAG 2 cut(s) 435, 497
BseRI GAGGAG 2 cut(s) 121, 490
BseXI GCAGC 4 cut(s) 128, 323, 715, 792
BsgI GTGCAG 1 cut(s) 714
BshFI GGCC 1 cut(s) 461
BshNI GGYRCC 1 cut(s) 494
BshVI ATCGAT 2 cut(s) 152, 362
BsiSI CCGG 2 cut(s) 241, 606
BslFI GGGAC 2 cut(s) 481, 571
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 481, 571
BsnI GGCC 1 cut(s) 461
Bsp13I TCCGGA 1 cut(s) 605
Bsp1407I TGTACA 1 cut(s) 305
Bsp143I GATC 4 cut(s) 51, 97, 363, 832
BspANI GGCC 1 cut(s) 461
BspCNI CTCAG 2 cut(s) 434, 496
BspDI ATCGAT 2 cut(s) 152, 362
BspEI TCCGGA 1 cut(s) 605
BspLI GGNNCC 1 cut(s) 496
BspPI GGATC 1 cut(s) 840
BspT107I GGYRCC 1 cut(s) 494
BsrGI TGTACA 1 cut(s) 305
BssECI CCNNGG 3 cut(s) 462, 463, 528
BssMI GATC 4 cut(s) 51, 97, 363, 832
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 3 cut(s) 194, 577, 785
Bst6I CTCTTC 2 cut(s) 139, 508
BstAUI TGTACA 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 59, 760, 803
BstDEI CTNAG 4 cut(s) 287, 421, 483, 902
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 3 cut(s) 271, 283, 304
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 4 cut(s) 54, 100, 366, 835
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 4 cut(s) 51, 97, 363, 832
BstMWI GCNNNNNNNGC 2 cut(s) 320, 802
BstNI CCWGG 1 cut(s) 464
BstSCI CCNGG 2 cut(s) 240, 462
BstV1I GCAGC 4 cut(s) 128, 323, 715, 792
BstX2I RGATCY 1 cut(s) 832
BstYI RGATCY 1 cut(s) 832
Bsu15I ATCGAT 2 cut(s) 152, 362
BsuRI GGCC 1 cut(s) 461
BsuTUI ATCGAT 2 cut(s) 152, 362
BtgI CCRYGG 1 cut(s) 528
BtsCI GGATG 3 cut(s) 271, 283, 304
BtsIMutI CAGTG 3 cut(s) 582, 731, 790
Cac8I GCNNGC 3 cut(s) 59, 760, 803
CaiI CAGNNNCTG 1 cut(s) 122
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 460
ClaI ATCGAT 2 cut(s) 152, 362
Csp6I GTAC 2 cut(s) 306, 347
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 2 cut(s) 367, 747
CviQI GTAC 2 cut(s) 306, 347
DdeI CTNAG 4 cut(s) 287, 421, 483, 902
DpnI GATC 4 cut(s) 53, 99, 365, 834
DpnII GATC 4 cut(s) 51, 97, 363, 832
DraI TTTAAA 2 cut(s) 21, 705
DrdI GACNNNNNNGTC 2 cut(s) 776, 852
DseDI GACNNNNNNGTC 2 cut(s) 776, 852
Eam1104I CTCTTC 2 cut(s) 139, 508
EarI CTCTTC 2 cut(s) 139, 508
EcoO109I RGGNCCY 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 462
FaeI CATG 2 cut(s) 370, 750
FaiI YATR 5 cut(s) 42, 368, 389, 659, 748
FaqI GGGAC 2 cut(s) 481, 571
FatI CATG 2 cut(s) 366, 746
FblI GTMKAC 1 cut(s) 780
Fnu4HI GCNGC 4 cut(s) 117, 312, 729, 806
FokI GGATG 3 cut(s) 278, 290, 311
Fsp4HI GCNGC 4 cut(s) 117, 312, 729, 806
FspI TGCGCA 1 cut(s) 371
GlaI GCGC 1 cut(s) 371
GluI GCNGC 4 cut(s) 117, 312, 729, 806
HaeIII GGCC 1 cut(s) 461
HapII CCGG 2 cut(s) 241, 606
HhaI GCGC 1 cut(s) 372
Hin1II CATG 2 cut(s) 370, 750
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HindIII AAGCTT 2 cut(s) 231, 653
HinfI GANTC 2 cut(s) 584, 846
HpaII CCGG 2 cut(s) 241, 606
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 4 cut(s) 306, 347, 399, 781
Hpy188I TCNGA 3 cut(s) 124, 486, 769
Hpy188III TCNNGA 5 cut(s) 442, 606, 752, 830, 836
Hpy8I GTNNAC 4 cut(s) 306, 347, 399, 781
HpyAV CCTTC 9 cut(s) 72, 372, 427, 439, 508, 607, 836, 845, 899
HpyCH4III ACNGT 3 cut(s) 194, 577, 785
HpyCH4IV ACGT 2 cut(s) 349, 774
HpyCH4V TGCA 6 cut(s) 187, 456, 731, 796, 808, 825
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 802
HpyF3I CTNAG 4 cut(s) 287, 421, 483, 902
HpySE526I ACGT 2 cut(s) 349, 774
Hsp92II CATG 2 cut(s) 370, 750
HspAI GCGC 1 cut(s) 370
Kpn2I TCCGGA 1 cut(s) 605
Kzo9I GATC 4 cut(s) 51, 97, 363, 832
LmnI GCTCC 2 cut(s) 244, 608
LpnPI CCDG 7 cut(s) 254, 449, 476, 619, 622, 815, 847
Lsp1109I GCAGC 4 cut(s) 128, 323, 715, 792
LweI GCATC 2 cut(s) 310, 715
MaeII ACGT 2 cut(s) 349, 774
MaeIII GTNAC 2 cut(s) 565, 615
MalI GATC 4 cut(s) 53, 99, 365, 834
MboI GATC 4 cut(s) 51, 97, 363, 832
MboII GAAGA 8 cut(s) 107, 126, 387, 495, 499, 698, 701, 851
MfeI CAATTG 1 cut(s) 812
MflI RGATCY 1 cut(s) 832
MluCI AATT 3 cut(s) 354, 537, 812
MlyI GAGTC 2 cut(s) 593, 840
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 9 cut(s) 22, 142, 230, 377, 400, 436, 468, 547, 748
MroI TCCGGA 1 cut(s) 605
MseI TTAA 5 cut(s) 20, 536, 704, 869, 894
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 2 cut(s) 241, 606
MspR9I CCNGG 2 cut(s) 242, 464
MunI CAATTG 1 cut(s) 812
MvaI CCWGG 1 cut(s) 464
MwoI GCNNNNNNNGC 2 cut(s) 320, 802
NciI CCSGG 1 cut(s) 242
NdeII GATC 4 cut(s) 51, 97, 363, 832
NlaIII CATG 2 cut(s) 370, 750
NlaIV GGNNCC 1 cut(s) 496
NmuCI GTSAC 2 cut(s) 565, 615
NsbI TGCGCA 1 cut(s) 371
OliI CACNNNNGTG 1 cut(s) 192
PasI CCCWGGG 1 cut(s) 463
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 4 cut(s) 118, 313, 730, 807
PleI GAGTC 2 cut(s) 592, 840
PpsI GAGTC 2 cut(s) 592, 840
Ppu21I YACGTR 1 cut(s) 350
PshBI ATTAAT 1 cut(s) 869
Psp6I CCWGG 1 cut(s) 462
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 496
PspPI GGNCC 1 cut(s) 460
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 832
RsaI GTAC 2 cut(s) 307, 348
RsaNI GTAC 2 cut(s) 306, 347
RseI CAYNNNNRTG 1 cut(s) 192
SalI GTCGAC 1 cut(s) 779
SaqAI TTAA 5 cut(s) 20, 536, 704, 869, 894
SatI GCNGC 4 cut(s) 117, 312, 729, 806
Sau3AI GATC 4 cut(s) 51, 97, 363, 832
Sau96I GGNCC 1 cut(s) 460
SchI GAGTC 2 cut(s) 593, 840
ScrFI CCNGG 2 cut(s) 242, 464
SfaNI GCATC 2 cut(s) 310, 715
SmiI ATTTAAAT 1 cut(s) 705
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 3 cut(s) 354, 537, 812
StyD4I CCNGG 2 cut(s) 240, 462
SwaI ATTTAAAT 1 cut(s) 705
TaaI ACNGT 3 cut(s) 194, 577, 785
TaiI ACGT 2 cut(s) 352, 777
TaqI TCGA 5 cut(s) 50, 152, 362, 780, 849
TasI AATT 3 cut(s) 354, 537, 812
TatI WGTACW 1 cut(s) 305
Tru1I TTAA 5 cut(s) 20, 536, 704, 869, 894
Tru9I TTAA 5 cut(s) 20, 536, 704, 869, 894
TscAI CASTG 3 cut(s) 582, 738, 790
TseFI GTSAC 2 cut(s) 565, 615
TseI GCWGC 4 cut(s) 116, 311, 728, 805
Tsp45I GTSAC 2 cut(s) 565, 615
TspDTI ATGAA 4 cut(s) 132, 589, 699, 735
TspRI CASTG 3 cut(s) 582, 738, 790
VspI ATTAAT 1 cut(s) 869
XapI RAATTY 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.