Rmu_sc0008097.1_g000001

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008097.1
OG0000199
Physical Location & Seq
Forward (+)
10944 .. 11261
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008097.1_g000001.1.cds

Sequence Viewer

Length: 318 bp
atggcttcccccgctcgctctaacagcttcccctccagggcacaccctatcattgaagaggctaatgaacaaatgtgcagactgaggtcttctgctgccacctcaacatcttcattatcaataagccaccaagtaagtggtctacaagacttgcatgaatgtgttgaaaggttgcttcagttgcccctcaatcaacaagcttcagcacaagagaaacatcagaaatgcactaatgtgctattagatggttctctcaggctcctggatgtctgtagcactgccaaagaagccttgctgcaaaccaaggaatgcttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

105

Amino Acids

11.5

Weight (kDa)

6.4

Isoelectric Point (pI)

72.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 142
AciI CCGC 1 cut(s) 12
AcuI CTGAAG 2 cut(s) 161, 186
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 2 cut(s) 56, 167
AjnI CCWGG 2 cut(s) 35, 261
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 2 cut(s) 27, 200
AluI AGCT 2 cut(s) 27, 200
ApeKI GCWGC 2 cut(s) 95, 295
BaeGI GKGCMC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 82, 282
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 2 cut(s) 37, 263
BfmI CTRYAG 1 cut(s) 271
BisI GCNGC 2 cut(s) 96, 296
BlsI GCNGC 2 cut(s) 97, 297
Bme1390I CCNGG 2 cut(s) 37, 263
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 2 cut(s) 37, 263
BoxI GACNNNNGTC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 36, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseBI CCWGG 2 cut(s) 37, 263
BseDI CCNNGG 2 cut(s) 36, 303
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 74, 268
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 2 cut(s) 82, 282
BsgI GTGCAG 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 37
BsmI GAATGC 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 43
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 2 cut(s) 75, 267
BspLI GGNNCC 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 36, 303
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 37, 263
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 83, 254
BstF5I GGATG 1 cut(s) 271
BstMWI GCNNNNNNNGC 4 cut(s) 11, 24, 181, 287
BstNI CCWGG 2 cut(s) 37, 263
BstPAI GACNNNNGTC 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 35, 261
BstSFI CTRYAG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 82, 282
BstV2I GAAGAC 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 16
CviAII CATG 1 cut(s) 155
CviJI RGCY 7 cut(s) 5, 27, 62, 126, 200, 259, 290
CviKI_1 RGCY 7 cut(s) 5, 27, 62, 126, 200, 259, 290
DdeI CTNAG 2 cut(s) 83, 254
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 303
Eco57I CTGAAG 2 cut(s) 161, 186
EcoRII CCWGG 2 cut(s) 35, 261
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 156, 316
FalI AAGNNNNNCTT 1 cut(s) 296
FatI CATG 1 cut(s) 154
FauI CCCGC 1 cut(s) 19
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 2 cut(s) 96, 296
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 96, 296
GluI GCNGC 2 cut(s) 96, 296
GsuI CTGGAG 1 cut(s) 19
Hin1II CATG 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 198
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 222
Hpy8I GTNNAC 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 78, 154, 228, 298
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 24, 181, 287
HpyF3I CTNAG 2 cut(s) 83, 254
Hsp92II CATG 1 cut(s) 158
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 5 cut(s) 22, 49, 241, 248, 275
Lsp1109I GCAGC 2 cut(s) 82, 282
MbiI CCGCTC 1 cut(s) 14
MboII GAAGA 3 cut(s) 68, 81, 102
MhlI GDGCHC 1 cut(s) 43
MnlI CCTC 5 cut(s) 43, 52, 78, 112, 197
MslI CAYNNNNRTG 2 cut(s) 159, 233
MspR9I CCNGG 2 cut(s) 37, 263
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 2 cut(s) 37, 263
MwoI GCNNNNNNNGC 4 cut(s) 11, 24, 181, 287
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 260
OliI CACNNNNGTG 1 cut(s) 233
PctI GAATGC 1 cut(s) 314
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 2 cut(s) 97, 297
PshAI GACNNNNGTC 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 35, 261
PspGI CCWGG 2 cut(s) 35, 261
PspN4I GGNNCC 1 cut(s) 260
RseI CAYNNNNRTG 2 cut(s) 159, 233
SatI GCNGC 2 cut(s) 96, 296
ScrFI CCNGG 2 cut(s) 37, 263
SduI GDGCHC 1 cut(s) 43
SetI ASST 5 cut(s) 29, 89, 104, 173, 202
SfcI CTRYAG 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 159, 233
SsiI CCGC 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 35, 261
StyI CCWWGG 1 cut(s) 303
TscAI CASTG 1 cut(s) 283
TseI GCWGC 2 cut(s) 95, 295
TspDTI ATGAA 3 cut(s) 81, 102, 171
TspRI CASTG 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.