Rh6BG242300

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000199
Physical Location & Seq
Forward (+)
45072581 .. 45073234
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG242300.1

Sequence Viewer

Length: 654 bp
ATGACTGCGTTTCTTCTTTTGCCGCTGAACCAACAAACCTTGAAACAAGAGTGCGGAGACACATGGATCAATCAACTACTTGATGGATCTTCAAGGCTCCTGGATGTGTGTGGCAAAATAAAGGATGCTTTGCTGCAAACAAAGGAATGCACACATGAACTTCGATCGATTATGTGCAGAAGACGGGGAGTTGACACGAGCTTTATGAGTGAGGTTTCAAAATACCTTACCTGTAGGAAGGATGTCAAGAAGGCAATCAACAAAGCCTCAAAGCTCAGAGAAAGTAAGAGCACAGACAAAACTCATGAGACTCCAGCCATTGTCAAGATGTTGAAAGAGTTAGATGCAGTCACCTCTGCTGTTTTTGAATCCTTGTTTTCCTTTATAGCTAGTTCAAATTTGAAATCAAAGTCAAGCACTTGGTCCTTAGTTTCAAAGCTGGTGCAGCACAGAAAAGTAGCATGTGAAGGTGAAGAAGTCAGAAAAACGAATGAGCTTGAGAAGGTGGATGCTGCATTGCACTTGCTCATGAGTCACAAGAATAAAGCATCTGATAACACAATGCAAGTTGATTATGTGCAAAAAAATTTAAAGGAATTCGAGATCAACATTCAAGATATTGAAGAACGACTTGAGTGCCTCTTTGGCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

217

Amino Acids

24.63

Weight (kDa)

8.61

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 3 - 215 1.4e-57 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 54
AclWI GGATC 2 cut(s) 74, 94
AcsI RAATTY 3 cut(s) 397, 586, 596
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 5 cut(s) 201, 274, 389, 439, 496
AluI AGCT 5 cut(s) 201, 274, 389, 439, 496
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 2 cut(s) 51, 302
AlwI GGATC 2 cut(s) 74, 94
ApeKI GCWGC 3 cut(s) 133, 445, 512
ApoI RAATTY 3 cut(s) 397, 586, 596
AspLEI GCGC 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 423
AsuHPI GGTGA 2 cut(s) 343, 482
AvaII GGWCC 1 cut(s) 423
BauI CACGAG 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 120, 457, 499
BccI CCATC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 618, 652
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 51, 302
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 232
BfoI RGCGCY 1 cut(s) 651
BglI GCCNNNNNGGC 1 cut(s) 645
BisI GCNGC 4 cut(s) 23, 134, 446, 513
BlsI GCNGC 4 cut(s) 24, 135, 447, 514
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 423
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 4 cut(s) 115, 334, 499, 557
BpiI GAAGAC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 518, 653
Bsa29I ATCGAT 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 167
BseGI GGATG 4 cut(s) 109, 130, 247, 514
BseMI GCAATG 1 cut(s) 515
BseMII CTCAG 1 cut(s) 289
BseXI GCAGC 3 cut(s) 120, 457, 499
BsgI GTGCAG 2 cut(s) 196, 464
Bsh1285I CGRYCG 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 51, 302
BsmI GAATGC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 4 cut(s) 66, 86, 164, 603
BspACI CCGC 2 cut(s) 23, 54
BspCNI CTCAG 1 cut(s) 288
BspDI ATCGAT 1 cut(s) 167
BspHI TCATGA 2 cut(s) 304, 528
BspLI GGNNCC 1 cut(s) 98
BspPI GGATC 2 cut(s) 74, 94
BsrDI GCAATG 1 cut(s) 515
BssMI GATC 4 cut(s) 66, 86, 164, 603
BssSI CACGAG 1 cut(s) 196
Bst2BI CACGAG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 275, 427
BstF5I GGATG 4 cut(s) 109, 130, 247, 514
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 1 cut(s) 650
BstKTI GATC 4 cut(s) 69, 89, 167, 606
BstMAI GTCTC 2 cut(s) 51, 302
BstMBI GATC 4 cut(s) 66, 86, 164, 603
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 2 cut(s) 445, 645
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 120, 457, 499
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 167
BsuTUI ATCGAT 1 cut(s) 167
BtsCI GGATG 4 cut(s) 109, 130, 247, 514
CciI TCATGA 2 cut(s) 304, 528
CfoI GCGC 1 cut(s) 650
Cfr13I GGNCC 1 cut(s) 423
ClaI ATCGAT 1 cut(s) 167
CviAII CATG 5 cut(s) 63, 155, 305, 462, 529
CviJI RGCY 8 cut(s) 97, 201, 266, 274, 317, 389, 439, 496
CviKI_1 RGCY 8 cut(s) 97, 201, 266, 274, 317, 389, 439, 496
DdeI CTNAG 2 cut(s) 275, 427
DpnI GATC 4 cut(s) 68, 88, 166, 605
DpnII GATC 4 cut(s) 66, 86, 164, 603
DraI TTTAAA 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 99
FaeI CATG 5 cut(s) 66, 158, 308, 465, 532
FaiI YATR 9 cut(s) 64, 156, 173, 206, 306, 386, 463, 530, 576
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FatI CATG 5 cut(s) 62, 154, 304, 461, 528
Fnu4HI GCNGC 4 cut(s) 23, 134, 446, 513
FokI GGATG 4 cut(s) 116, 137, 254, 521
Fsp4HI GCNGC 4 cut(s) 23, 134, 446, 513
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 649
GluI GCNGC 4 cut(s) 23, 134, 446, 513
GsuI CTGGAG 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 651
HhaI GCGC 1 cut(s) 650
Hin1II CATG 5 cut(s) 66, 158, 308, 465, 532
Hin6I GCGC 1 cut(s) 648
HinP1I GCGC 1 cut(s) 648
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 3 cut(s) 310, 368, 532
HphI GGTGA 2 cut(s) 343, 482
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 3 cut(s) 278, 482, 553
Hpy188III TCNNGA 6 cut(s) 247, 305, 325, 529, 601, 614
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 4 cut(s) 232, 244, 461, 496
HpyCH4V TGCA 9 cut(s) 136, 150, 177, 347, 445, 515, 520, 565, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 645
HpyF3I CTNAG 2 cut(s) 275, 427
Hsp92II CATG 5 cut(s) 66, 158, 308, 465, 532
HspAI GCGC 1 cut(s) 648
Kzo9I GATC 4 cut(s) 66, 86, 164, 603
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 5 cut(s) 86, 113, 244, 327, 425
Lsp1109I GCAGC 3 cut(s) 120, 457, 499
LweI GCATC 4 cut(s) 115, 334, 499, 557
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 349, 533
MalI GATC 4 cut(s) 68, 88, 166, 605
MboI GATC 4 cut(s) 66, 86, 164, 603
MboII GAAGA 5 cut(s) 5, 81, 192, 485, 635
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 3 cut(s) 397, 586, 596
MlyI GAGTC 2 cut(s) 304, 541
MnlI CCTC 4 cut(s) 205, 277, 364, 650
MseI TTAA 2 cut(s) 590, 652
MspA1I CMGCKG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 152
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 445, 645
NdeII GATC 4 cut(s) 66, 86, 164, 603
NlaIII CATG 5 cut(s) 66, 158, 308, 465, 532
NlaIV GGNNCC 1 cut(s) 98
NmuCI GTSAC 2 cut(s) 349, 533
NspI RCATGY 1 cut(s) 465
PagI TCATGA 2 cut(s) 304, 528
PctI GAATGC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 368
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 4 cut(s) 24, 135, 447, 514
Ple19I CGATCG 1 cut(s) 167
PleI GAGTC 2 cut(s) 304, 540
PpsI GAGTC 2 cut(s) 304, 540
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 423
PsuI RGATCY 1 cut(s) 86
PvuI CGATCG 1 cut(s) 167
SaqAI TTAA 2 cut(s) 590, 652
SatI GCNGC 4 cut(s) 23, 134, 446, 513
Sau3AI GATC 4 cut(s) 66, 86, 164, 603
Sau96I GGNCC 1 cut(s) 423
SchI GAGTC 2 cut(s) 304, 541
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 293
SfaNI GCATC 4 cut(s) 115, 334, 499, 557
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 423
SmlI CTYRAG 2 cut(s) 497, 632
SmoI CTYRAG 2 cut(s) 497, 632
Sse9I AATT 3 cut(s) 397, 586, 596
SsiI CCGC 2 cut(s) 23, 54
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 99
TaqI TCGA 3 cut(s) 163, 167, 600
TasI AATT 3 cut(s) 397, 586, 596
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 590, 652
Tru9I TTAA 2 cut(s) 590, 652
TseFI GTSAC 2 cut(s) 349, 533
TseI GCWGC 3 cut(s) 133, 445, 512
Tsp45I GTSAC 2 cut(s) 349, 533
TspDTI ATGAA 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 423
XapI RAATTY 3 cut(s) 397, 586, 596
XceI RCATGY 1 cut(s) 465
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.