FvH4_2g16200

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000199
Physical Location & Seq
Reverse (-)
14164452 .. 14165273
822 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16200.t1

Sequence Viewer

Length: 711 bp
ATGGCTCTCCACACTCGCTCTAACAGCTTTCCCTCAAGGCCACACCCACTGTTTCAGCAAATTGATGAGCATTTATGCAGATTGAAGTCTTCTGAGGCCACCTCCACATCTTCATCATCAATAAGCCACAACCTAAGCAGTATTCAAGACTTGTATGATTGTCACTTCCAAAGATGCCCTGATGAAAACCAAGAAAAATGTACAAGATCTTCAATCAATCATCGAAGAAGGCGTGGAGACGAATCTGGAGTACTCACAAGGGAAGCAAGGAAATACTTGATATCCAGGAAGACTGTGAAAAAGGCACTCCACAAAGCTTTGGGGGGCATGAAGAATATGGCAAGCAGAGCTTCATCTTCCTGCAAGGATCAAGAGATTATCACCATTGTTAGCAAGCTGAGAGATGTGGAAGCAGTCACTCTAGCTATGTTTGAATCATTTATTTCCTTCATCTCTGGGCCAAAGTCAAAGCCAAGCAGCTGGTCTTTGGTTTCCAAGATGGTGCAGTCAAAAAGAATAGCTTGCGAGGAAGAAACAAAAGTAAATGAATTTGCAGAGGTGGATGCTGCATTGAACTCACTCAAGAGTGGTGACAATGCACACAACCAGCTTAACAATTTGGAATCATGCAAAGAAGACCAAGAGGTTGATTCTCTATTTAGGCAATTGATCAAAACAAGAGTCCCCCTTCTCAACATCCTCAACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

237

Amino Acids

26.63

Weight (kDa)

9.08

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 75 - 233 7.2e-40 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 375
AcsI RAATTY 1 cut(s) 548
AfaI GTAC 2 cut(s) 202, 252
AgsI TTSAA 5 cut(s) 85, 146, 213, 434, 574
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 8 cut(s) 27, 317, 350, 397, 425, 480, 521, 610
AluI AGCT 8 cut(s) 27, 317, 350, 397, 425, 480, 521, 610
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 375
AoxI GGCC 3 cut(s) 38, 96, 458
ApeKI GCWGC 2 cut(s) 477, 566
ApoI RAATTY 1 cut(s) 548
ArsI GACNNNNNNTTYG 2 cut(s) 666, 698
AspS9I GGNCC 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 373, 602
BarI GAAGNNNNNNTAC 2 cut(s) 193, 225
BbsI GAAGAC 3 cut(s) 81, 296, 642
BbvI GCAGC 2 cut(s) 489, 553
BccI CCATC 1 cut(s) 493
BciT130I CCWGG 1 cut(s) 286
BclI TGATCA 1 cut(s) 669
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 422
BglII AGATCT 1 cut(s) 206
BisI GCNGC 2 cut(s) 478, 567
BlsI GCNGC 2 cut(s) 479, 568
BmcAI AGTACT 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 458
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 2 cut(s) 164, 553
BpiI GAAGAC 3 cut(s) 81, 296, 642
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 134
BpuEI CTTGAG 2 cut(s) 19, 566
BseBI CCWGG 1 cut(s) 286
BseGI GGATG 2 cut(s) 568, 696
BseMII CTCAG 2 cut(s) 84, 389
BseXI GCAGC 2 cut(s) 489, 553
BsgI GTGCAG 1 cut(s) 524
BshFI GGCC 3 cut(s) 40, 98, 460
BslFI GGGAC 1 cut(s) 668
BsmAI GTCTC 1 cut(s) 231
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 668
BsnI GGCC 3 cut(s) 40, 98, 460
Bsp1407I TGTACA 1 cut(s) 200
Bsp143I GATC 3 cut(s) 206, 367, 669
BspANI GGCC 3 cut(s) 40, 98, 460
BspCNI CTCAG 2 cut(s) 85, 390
BspPI GGATC 1 cut(s) 375
BsrGI TGTACA 1 cut(s) 200
BssMI GATC 3 cut(s) 206, 367, 669
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 51, 295
BstAUI TGTACA 1 cut(s) 200
BstC8I GCNNGC 3 cut(s) 343, 395, 523
BstDEI CTNAG 3 cut(s) 93, 134, 398
BstF5I GGATG 2 cut(s) 568, 696
BstKTI GATC 3 cut(s) 209, 370, 672
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 206, 367, 669
BstMWI GCNNNNNNNGC 2 cut(s) 24, 347
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 489, 553
BstV2I GAAGAC 3 cut(s) 81, 296, 642
BstX2I RGATCY 1 cut(s) 206
BstXI CCANNNNNNTGG 1 cut(s) 480
BstYI RGATCY 1 cut(s) 206
BsuRI GGCC 3 cut(s) 40, 98, 460
BtsCI GGATG 2 cut(s) 568, 696
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 3 cut(s) 343, 395, 523
Cfr13I GGNCC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 201, 251
CviAII CATG 2 cut(s) 328, 627
CviQI GTAC 2 cut(s) 201, 251
DdeI CTNAG 3 cut(s) 93, 134, 398
DpnI GATC 3 cut(s) 208, 369, 671
DpnII GATC 3 cut(s) 206, 367, 669
Eco32I GATATC 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 284
EcoRV GATATC 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 231
FaeI CATG 2 cut(s) 331, 630
FaiI YATR 6 cut(s) 76, 156, 329, 338, 428, 628
FalI AAGNNNNNCTT 4 cut(s) 334, 366, 505, 537
FaqI GGGAC 1 cut(s) 668
FatI CATG 2 cut(s) 327, 626
FbaI TGATCA 1 cut(s) 669
Fnu4HI GCNGC 2 cut(s) 478, 567
FokI GGATG 2 cut(s) 575, 683
Fsp4HI GCNGC 2 cut(s) 478, 567
FspBI CTAG 1 cut(s) 422
GluI GCNGC 2 cut(s) 478, 567
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 3 cut(s) 40, 98, 460
Hin1II CATG 2 cut(s) 331, 630
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 5 cut(s) 242, 434, 623, 650, 681
HphI GGTGA 2 cut(s) 373, 602
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 4 cut(s) 146, 246, 371, 583
HpyAV CCTTC 3 cut(s) 222, 457, 698
HpyCH4III ACNGT 2 cut(s) 51, 295
HpyCH4V TGCA 7 cut(s) 78, 363, 505, 554, 569, 599, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 347
HpyF3I CTNAG 3 cut(s) 93, 134, 398
Hsp92II CATG 2 cut(s) 331, 630
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 3 cut(s) 206, 367, 669
LpnPI CCDG 8 cut(s) 192, 231, 271, 298, 373, 441, 466, 620
Lsp1109I GCAGC 2 cut(s) 489, 553
LweI GCATC 2 cut(s) 164, 553
MaeI CTAG 1 cut(s) 422
MaeIII GTNAC 3 cut(s) 161, 415, 590
MalI GATC 3 cut(s) 208, 369, 671
MboI GATC 3 cut(s) 206, 367, 669
MboII GAAGA 9 cut(s) 81, 102, 201, 237, 301, 343, 348, 542, 647
MfeI CAATTG 1 cut(s) 665
MflI RGATCY 1 cut(s) 206
MluCI AATT 4 cut(s) 60, 548, 616, 665
MlyI GAGTC 1 cut(s) 690
MnlI CCTC 7 cut(s) 43, 88, 112, 520, 550, 637, 710
MseI TTAA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 286
MunI CAATTG 1 cut(s) 665
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 24, 347
NdeII GATC 3 cut(s) 206, 367, 669
NlaIII CATG 2 cut(s) 331, 630
NmuCI GTSAC 3 cut(s) 161, 415, 590
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PfeI GAWTC 4 cut(s) 242, 434, 623, 650
PfoI TCCNGGA 1 cut(s) 284
PkrI GCNGC 2 cut(s) 479, 568
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspPI GGNCC 1 cut(s) 458
PsuI RGATCY 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 480
RsaI GTAC 2 cut(s) 202, 252
RsaNI GTAC 2 cut(s) 201, 251
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 2 cut(s) 478, 567
Sau3AI GATC 3 cut(s) 206, 367, 669
Sau96I GGNCC 1 cut(s) 458
ScaI AGTACT 1 cut(s) 252
SchI GAGTC 1 cut(s) 690
ScrFI CCNGG 1 cut(s) 286
SfaNI GCATC 2 cut(s) 164, 553
SmlI CTYRAG 2 cut(s) 34, 581
SmoI CTYRAG 2 cut(s) 34, 581
Sse9I AATT 4 cut(s) 60, 548, 616, 665
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 51, 295
TaqI TCGA 1 cut(s) 223
TasI AATT 4 cut(s) 60, 548, 616, 665
TatI WGTACW 2 cut(s) 200, 250
TfiI GAWTC 4 cut(s) 242, 434, 623, 650
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 3 cut(s) 161, 415, 590
TseI GCWGC 2 cut(s) 477, 566
Tsp45I GTSAC 3 cut(s) 161, 415, 590
TspDTI ATGAA 6 cut(s) 102, 198, 342, 344, 439, 561
TspRI CASTG 1 cut(s) 54
XapI RAATTY 1 cut(s) 548
XspI CTAG 1 cut(s) 422
ZrmI AGTACT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.