MD05G1130600.v1.1

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000199
Physical Location & Seq
Reverse (-)
25570410 .. 25571246
837 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1130600.v1.1.491

Sequence Viewer

Length: 837 bp
ATGGCTTTCCACACTCGCTCTAACAGCTTCCCCTCAAGGCCACACCCGATCGCTCAACAAGTTGGTGAACTTTTGTGCAGATTGAGGTCTTCTGAGGCCACCTCTACATCTTCATCATCCATCAGCCACAAGCTAAATGGTTTACAAGATTTGCAAGATTGTGTTGATAGGTTGCTTCAGTTGCCCCTCAATCAACAAGCCTTAGCCCAAGAGCAAAATGAGAAATACACTAATGAGCTATTAGATGGCTCTATCAGACTGTTGGATGTTTGTGCCATTGCCAAGGATGCCGTCTTGCAAACCAAGGAATGCATATTGGATCTTCAATCAATCATACGAAGAACACGAGGAGGTGAATCTGGAACTCTCACAAGTGAGGTTAACAAATACTTAAGCTCCAGGAAGATTTTGAATAGGGCAATTCAAAAGGCTTTGAAGAATCTAAAGGGCATTAAAAACCGATCCACCTTATCTTCCCTCAACAAGGACCAAGAGACTATTGACATTGTTATTAAGTTGAGAGATGTCGAAACAGTCACCATCATGGTGCTTGAATCAGTACTGTCCTTCATCTCCGGGCCAAAGTCAAAGCCAAGCAGCTGGTCATTGGTCTCCAAGATGATGCACTTGAAAAAAGTAGCTTGTAACGAAGAAACAGAAGTAAATGAATTTGCAGAAGTGGATGCTACACTCAAGACAAGCAAATTTCATCCCCAAAACCAGCTTGAAAATCTGGAGTCATGCATTCAAGATCACGAAGAACGACTTGAAGGCCTATTTAGGCAGTTGATCAAAACCAGAGTCTCATTCCTCAACATCCTTAACCACAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

279

Amino Acids

31.32

Weight (kDa)

8.69

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 273 4.9e-80 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 327, 456
AcsI RAATTY 2 cut(s) 668, 704
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 561
AfiI CCNNNNNNNGG 1 cut(s) 484
AflII CTTAAG 1 cut(s) 391
AgsI TTSAA 9 cut(s) 326, 412, 425, 436, 554, 631, 728, 749, 770
AjnI CCWGG 1 cut(s) 398
AluBI AGCT 7 cut(s) 27, 133, 238, 396, 600, 641, 724
AluI AGCT 7 cut(s) 27, 133, 238, 396, 600, 641, 724
Alw26I GTCTC 3 cut(s) 488, 616, 808
AlwI GGATC 2 cut(s) 327, 456
AoxI GGCC 4 cut(s) 38, 96, 578, 772
ApeKI GCWGC 1 cut(s) 597
ApoI RAATTY 2 cut(s) 668, 704
ArsI GACNNNNNNTTYG 2 cut(s) 786, 818
AspS9I GGNCC 2 cut(s) 487, 578
AsuC2I CCSGG 1 cut(s) 577
AsuHPI GGTGA 3 cut(s) 77, 365, 529
AvaII GGWCC 1 cut(s) 487
BauI CACGAG 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 609
BccI CCATC 3 cut(s) 128, 239, 548
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 400
BclI TGATCA 1 cut(s) 789
BcnI CCSGG 1 cut(s) 577
BcoDI GTCTC 3 cut(s) 488, 616, 808
BfrI CTTAAG 1 cut(s) 391
BisI GCNGC 1 cut(s) 598
BlsI GCNGC 1 cut(s) 599
BmcAI AGTACT 1 cut(s) 561
Bme1390I CCNGG 2 cut(s) 400, 577
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 2 cut(s) 487, 578
BmrFI CCNGG 2 cut(s) 400, 577
BmsI GCATC 3 cut(s) 277, 612, 673
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 2 cut(s) 382, 755
Bpu10I CCTNAGC 1 cut(s) 202
BpuEI CTTGAG 2 cut(s) 19, 677
BpuMI CCSGG 1 cut(s) 577
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 2 cut(s) 282, 303
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 2 cut(s) 282, 303
BseGI GGATG 6 cut(s) 116, 271, 292, 688, 709, 816
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 1 cut(s) 609
BsgI GTGCAG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 4 cut(s) 40, 98, 580, 774
BsiEI CGRYCG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 576
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 3 cut(s) 488, 616, 808
BsmI GAATGC 2 cut(s) 314, 744
BsnI GGCC 4 cut(s) 40, 98, 580, 774
Bso31I GGTCTC 1 cut(s) 616
Bsp143I GATC 5 cut(s) 48, 319, 461, 751, 789
BspANI GGCC 4 cut(s) 40, 98, 580, 774
BspCNI CTCAG 1 cut(s) 85
BspPI GGATC 2 cut(s) 327, 456
BspTI CTTAAG 1 cut(s) 391
BspTNI GGTCTC 1 cut(s) 616
BsrDI GCAATG 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 282, 303
BssMI GATC 5 cut(s) 48, 319, 461, 751, 789
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 2 cut(s) 282, 303
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 3 cut(s) 261, 535, 564
BstAFI CTTAAG 1 cut(s) 391
BstDEI CTNAG 2 cut(s) 93, 202
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 6 cut(s) 116, 271, 292, 688, 709, 816
BstKTI GATC 5 cut(s) 51, 322, 464, 754, 792
BstMAI GTCTC 3 cut(s) 488, 616, 808
BstMBI GATC 5 cut(s) 48, 319, 461, 751, 789
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 24, 181, 287
BstNI CCWGG 1 cut(s) 400
BstSCI CCNGG 2 cut(s) 398, 575
BstV1I GCAGC 1 cut(s) 609
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 600
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 4 cut(s) 40, 98, 580, 774
BtsCI GGATG 6 cut(s) 116, 271, 292, 688, 709, 816
Cfr13I GGNCC 2 cut(s) 487, 578
Csp6I GTAC 1 cut(s) 560
CviAII CATG 2 cut(s) 544, 741
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 2 cut(s) 93, 202
DpnI GATC 5 cut(s) 50, 321, 463, 753, 791
DpnII GATC 5 cut(s) 48, 319, 461, 751, 789
Eco130I CCWWGG 2 cut(s) 282, 303
Eco147I AGGCCT 1 cut(s) 774
Eco31I GGTCTC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 398
EcoT14I CCWWGG 2 cut(s) 282, 303
EcoT22I ATGCAT 2 cut(s) 314, 746
ErhI CCWWGG 2 cut(s) 282, 303
FaeI CATG 2 cut(s) 547, 744
FaiI YATR 4 cut(s) 314, 335, 545, 742
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FatI CATG 2 cut(s) 543, 740
FbaI TGATCA 1 cut(s) 789
Fnu4HI GCNGC 1 cut(s) 598
FokI GGATG 6 cut(s) 103, 278, 299, 695, 696, 803
Fsp4HI GCNGC 1 cut(s) 598
GluI GCNGC 1 cut(s) 598
GsuI CTGGAG 2 cut(s) 382, 755
HaeIII GGCC 4 cut(s) 40, 98, 580, 774
HapII CCGG 1 cut(s) 576
Hin1II CATG 2 cut(s) 547, 744
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 5 cut(s) 356, 439, 554, 737, 801
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 1 cut(s) 576
HphI GGTGA 3 cut(s) 77, 365, 529
Hpy166II GTNNAC 3 cut(s) 68, 143, 382
Hpy188I TCNGA 2 cut(s) 94, 257
Hpy188III TCNNGA 5 cut(s) 360, 694, 734, 749, 755
Hpy8I GTNNAC 3 cut(s) 68, 143, 382
HpyAV CCTTC 2 cut(s) 577, 764
HpyCH4III ACNGT 3 cut(s) 261, 535, 564
HpyCH4V TGCA 7 cut(s) 78, 154, 298, 312, 625, 674, 744
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 181, 287
HpyF3I CTNAG 2 cut(s) 93, 202
Hsp92II CATG 2 cut(s) 547, 744
Ksp22I TGATCA 1 cut(s) 789
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 5 cut(s) 48, 319, 461, 751, 789
LmnI GCTCC 1 cut(s) 401
LpnPI CCDG 8 cut(s) 345, 385, 412, 586, 589, 719, 734, 811
Lsp1109I GCAGC 1 cut(s) 609
LweI GCATC 3 cut(s) 277, 612, 673
MaeIII GTNAC 2 cut(s) 535, 644
MalI GATC 5 cut(s) 50, 321, 463, 753, 791
MboI GATC 5 cut(s) 48, 319, 461, 751, 789
MboII GAAGA 9 cut(s) 81, 102, 314, 351, 415, 448, 465, 662, 770
MflI RGATCY 1 cut(s) 319
MluCI AATT 4 cut(s) 420, 668, 704, 832
MlyI GAGTC 2 cut(s) 746, 810
MmeI TCCRAC 1 cut(s) 243
Mph1103I ATGCAT 2 cut(s) 314, 746
MseI TTAA 5 cut(s) 381, 392, 453, 513, 822
MslI CAYNNNNRTG 2 cut(s) 542, 545
MspA1I CMGCKG 1 cut(s) 600
MspCI CTTAAG 1 cut(s) 391
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 2 cut(s) 400, 577
Mva1269I GAATGC 2 cut(s) 314, 744
MvaI CCWGG 1 cut(s) 400
MwoI GCNNNNNNNGC 3 cut(s) 24, 181, 287
NciI CCSGG 1 cut(s) 577
NdeII GATC 5 cut(s) 48, 319, 461, 751, 789
NlaIII CATG 2 cut(s) 547, 744
NmuCI GTSAC 1 cut(s) 535
NsiI ATGCAT 2 cut(s) 314, 746
PceI AGGCCT 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PctI GAATGC 2 cut(s) 314, 744
PfeI GAWTC 3 cut(s) 356, 439, 554
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 1 cut(s) 599
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 2 cut(s) 745, 809
PpsI GAGTC 2 cut(s) 745, 809
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PspPI GGNCC 2 cut(s) 487, 578
PsuI RGATCY 1 cut(s) 319
PvuI CGATCG 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 600
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
RseI CAYNNNNRTG 2 cut(s) 542, 545
SaqAI TTAA 5 cut(s) 381, 392, 453, 513, 822
SatI GCNGC 1 cut(s) 598
Sau3AI GATC 5 cut(s) 48, 319, 461, 751, 789
Sau96I GGNCC 2 cut(s) 487, 578
ScaI AGTACT 1 cut(s) 561
SchI GAGTC 2 cut(s) 746, 810
ScrFI CCNGG 2 cut(s) 400, 577
SfaNI GCATC 3 cut(s) 277, 612, 673
SinI GGWCC 1 cut(s) 487
SmiMI CAYNNNNRTG 2 cut(s) 542, 545
SmlI CTYRAG 3 cut(s) 34, 391, 692
SmoI CTYRAG 3 cut(s) 34, 391, 692
Sse9I AATT 4 cut(s) 420, 668, 704, 832
SseBI AGGCCT 1 cut(s) 774
StuI AGGCCT 1 cut(s) 774
StyD4I CCNGG 2 cut(s) 398, 575
StyI CCWWGG 2 cut(s) 282, 303
TaaI ACNGT 3 cut(s) 261, 535, 564
TaqI TCGA 1 cut(s) 528
TasI AATT 4 cut(s) 420, 668, 704, 832
TatI WGTACW 1 cut(s) 559
TfiI GAWTC 3 cut(s) 356, 439, 554
Tru1I TTAA 5 cut(s) 381, 392, 453, 513, 822
Tru9I TTAA 5 cut(s) 381, 392, 453, 513, 822
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 1 cut(s) 597
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 4 cut(s) 102, 559, 681, 698
Vha464I CTTAAG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 487
XagI CCTNNNNNAGG 1 cut(s) 482
XapI RAATTY 2 cut(s) 668, 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 561
Zsp2I ATGCAT 2 cut(s) 314, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.