RLG00000013110

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
26291813 .. 26292638
826 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013110

Sequence Viewer

Length: 756 bp
ATGGCTTACCACGCTCGATCTACCAGCTTCCCCTCTAGGCCACACCCAGTCAATCAACAAGTAGATGAATATTTGTCCAGATTGAGGTCTTCTGAAACAACTTCCACATCATCTATAAGCCACAGACTAAGTGGTCTTCAAGACTTACATGATCGTGTTGATAGGTTGCTTCAATTGCCACTCACCCAACAATCCTCGGCACAAGAGAAGCATCAGAAATGGGCTGATGAGATATTAGATGGCTCTCTCAGGATGTTGGATGTTTGTAGCACTGCCAAGGATGCCATGTTGCAAACCAAGGAGTGCATACAAGAACTTCAATCAATCATTCGAAGAAGGCGTAAAGACCAATCTGGAGTGGTCACAAGTGAGGCAAACAGATCCACTTTCTCTTCGCTCAACAACGACCAAGAGACTATCTCCATTTTTAGCACGCTGAGAGATGTTGAAGTAGTCACTCTCACAGTGTTGGAATCAGTGTTGTCCTTCATCTCTGGGCCAAAATCAAAGCCTAGCAGCTGTTCTTTGGTTTCCAAGATGGTGCAGTCTAAAAGAATAGCTTGTGAGGAAGAAATGAAAGTAAACGAATTTGCACAAGTGGATGCTGCATTGAAGTCACACACAAGTTTAGACGATGCACACAACCAATTTAACAATCTGAACTCATGCATTCAAGACCAAGAAGAAGGACTCGACTGCCTATTTAGGCCATTGATCAAAACAAGAGTCTCCCTTCTCAACATCTTAAGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

252

Amino Acids

28.26

Weight (kDa)

6.25

Isoelectric Point (pI)

67.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 43 - 119 3.4e-31 Protein BPS1
BPS1 PF03087 124 - 248 4.7e-35 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 132
AclWI GGATC 1 cut(s) 375
AcsI RAATTY 1 cut(s) 587
AfiI CCNNNNNNNGG 1 cut(s) 84
AflII CTTAAG 1 cut(s) 745
AgsI TTSAA 6 cut(s) 140, 173, 320, 449, 613, 674
AluBI AGCT 3 cut(s) 27, 519, 560
AluI AGCT 3 cut(s) 27, 519, 560
Alw26I GTCTC 2 cut(s) 407, 733
AlwI GGATC 1 cut(s) 375
AoxI GGCC 3 cut(s) 38, 497, 707
ApeKI GCWGC 2 cut(s) 516, 605
ApoI RAATTY 1 cut(s) 587
ArsI GACNNNNNNTTYG 2 cut(s) 711, 743
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 175
AsuII TTCGAA 1 cut(s) 331
BbsI GAAGAC 2 cut(s) 81, 128
BbvI GCAGC 2 cut(s) 528, 592
BccI CCATC 2 cut(s) 233, 532
BclI TGATCA 1 cut(s) 714
BcoDI GTCTC 2 cut(s) 407, 733
BfaI CTAG 3 cut(s) 36, 513, 754
BfrI CTTAAG 1 cut(s) 745
BisI GCNGC 2 cut(s) 517, 606
BlsI GCNGC 2 cut(s) 518, 607
BmgT120I GGNCC 1 cut(s) 497
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 4 cut(s) 220, 271, 592, 625
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 2 cut(s) 81, 128
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpmI CTGGAG 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 331
BsaJI CCNNGG 3 cut(s) 195, 276, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 195, 276, 297
BseGI GGATG 4 cut(s) 258, 265, 286, 607
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 262, 428
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 528, 592
BsgI GTGCAG 1 cut(s) 563
BshFI GGCC 3 cut(s) 40, 499, 709
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 407, 733
BsmI GAATGC 1 cut(s) 669
BsnI GGCC 3 cut(s) 40, 499, 709
Bsp119I TTCGAA 1 cut(s) 331
Bsp143I GATC 4 cut(s) 17, 151, 380, 714
BspANI GGCC 3 cut(s) 40, 499, 709
BspCNI CTCAG 2 cut(s) 261, 429
BspPI GGATC 1 cut(s) 375
BspT104I TTCGAA 1 cut(s) 331
BspTI CTTAAG 1 cut(s) 745
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 195, 276, 297
BssMI GATC 4 cut(s) 17, 151, 380, 714
BssT1I CCWWGG 2 cut(s) 276, 297
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 1 cut(s) 397
BstAFI CTTAAG 1 cut(s) 745
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 3 cut(s) 128, 248, 437
BstF5I GGATG 4 cut(s) 258, 265, 286, 607
BstKTI GATC 4 cut(s) 20, 154, 383, 717
BstMAI GTCTC 2 cut(s) 407, 733
BstMBI GATC 4 cut(s) 17, 151, 380, 714
BstMWI GCNNNNNNNGC 3 cut(s) 11, 175, 281
BstV1I GCAGC 2 cut(s) 528, 592
BstV2I GAAGAC 2 cut(s) 81, 128
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BsuRI GGCC 3 cut(s) 40, 499, 709
BtsCI GGATG 4 cut(s) 258, 265, 286, 607
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 3 cut(s) 270, 471, 483
Cac8I GCNNGC 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 497
CviAII CATG 3 cut(s) 149, 286, 666
DdeI CTNAG 3 cut(s) 128, 248, 437
DpnI GATC 4 cut(s) 19, 153, 382, 716
DpnII GATC 4 cut(s) 17, 151, 380, 714
DrdI GACNNNNNNGTC 1 cut(s) 132
DseDI GACNNNNNNGTC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
Eco130I CCWWGG 2 cut(s) 276, 297
EcoT14I CCWWGG 2 cut(s) 276, 297
EcoT22I ATGCAT 1 cut(s) 671
ErhI CCWWGG 2 cut(s) 276, 297
FaeI CATG 3 cut(s) 152, 289, 669
FaiI YATR 5 cut(s) 116, 150, 287, 308, 667
FalI AAGNNNNNCTT 2 cut(s) 544, 576
FatI CATG 3 cut(s) 148, 285, 665
FbaI TGATCA 1 cut(s) 714
Fnu4HI GCNGC 2 cut(s) 517, 606
FokI GGATG 4 cut(s) 265, 272, 293, 614
Fsp4HI GCNGC 2 cut(s) 517, 606
FspBI CTAG 3 cut(s) 36, 513, 754
GluI GCNGC 2 cut(s) 517, 606
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 3 cut(s) 40, 499, 709
Hin1II CATG 3 cut(s) 152, 289, 669
HinfI GANTC 3 cut(s) 473, 690, 726
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 3 cut(s) 94, 216, 660
Hpy188III TCNNGA 5 cut(s) 78, 140, 250, 354, 674
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 4 cut(s) 330, 496, 680, 743
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 7 cut(s) 292, 306, 544, 593, 608, 638, 669
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 175, 281
HpyF3I CTNAG 3 cut(s) 128, 248, 437
Hsp92II CATG 3 cut(s) 152, 289, 669
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 4 cut(s) 17, 151, 380, 714
LpnPI CCDG 6 cut(s) 37, 60, 91, 235, 339, 480
Lsp1109I GCAGC 2 cut(s) 528, 592
LweI GCATC 4 cut(s) 220, 271, 592, 625
MaeI CTAG 3 cut(s) 36, 513, 754
MaeIII GTNAC 3 cut(s) 361, 454, 615
MalI GATC 4 cut(s) 19, 153, 382, 716
MboI GATC 4 cut(s) 17, 151, 380, 714
MboII GAAGA 6 cut(s) 81, 128, 345, 384, 581, 695
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 380
MluCI AATT 3 cut(s) 173, 587, 647
MlyI GAGTC 2 cut(s) 684, 735
MmeI TCCRAC 2 cut(s) 237, 450
MnlI CCTC 5 cut(s) 43, 78, 205, 364, 559
Mph1103I ATGCAT 1 cut(s) 671
MseI TTAA 2 cut(s) 651, 746
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 519
MspCI CTTAAG 1 cut(s) 745
MunI CAATTG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 669
MwoI GCNNNNNNNGC 3 cut(s) 11, 175, 281
NdeII GATC 4 cut(s) 17, 151, 380, 714
NlaIII CATG 3 cut(s) 152, 289, 669
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 3 cut(s) 361, 454, 615
NsiI ATGCAT 1 cut(s) 671
NspV TTCGAA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PctI GAATGC 1 cut(s) 669
PfeI GAWTC 1 cut(s) 473
PkrI GCNGC 2 cut(s) 518, 607
PleI GAGTC 2 cut(s) 684, 734
PpsI GAGTC 2 cut(s) 684, 734
PspPI GGNCC 1 cut(s) 497
PsuI RGATCY 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 519
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 2 cut(s) 651, 746
SatI GCNGC 2 cut(s) 517, 606
Sau3AI GATC 4 cut(s) 17, 151, 380, 714
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 2 cut(s) 684, 735
SetI ASST 5 cut(s) 29, 89, 167, 521, 562
SfaNI GCATC 4 cut(s) 220, 271, 592, 625
SfuI TTCGAA 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
Sse9I AATT 3 cut(s) 173, 587, 647
SspI AATATT 1 cut(s) 71
SspMI CTAG 3 cut(s) 36, 513, 754
StyI CCWWGG 2 cut(s) 276, 297
TaaI ACNGT 1 cut(s) 466
TaqI TCGA 3 cut(s) 16, 331, 693
TasI AATT 3 cut(s) 173, 587, 647
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 2 cut(s) 651, 746
Tru9I TTAA 2 cut(s) 651, 746
TscAI CASTG 3 cut(s) 277, 471, 483
TseFI GTSAC 3 cut(s) 361, 454, 615
TseI GCWGC 2 cut(s) 516, 605
Tsp45I GTSAC 3 cut(s) 361, 454, 615
TspDTI ATGAA 3 cut(s) 81, 478, 590
TspRI CASTG 3 cut(s) 277, 471, 483
Vha464I CTTAAG 1 cut(s) 745
XapI RAATTY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XspI CTAG 3 cut(s) 36, 513, 754
Zsp2I ATGCAT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.