Rroxscaffold_7G00188460

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000199
Physical Location & Seq
Reverse (-)
28030865 .. 28039199
8335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188460.1

Sequence Viewer

Length: 480 bp
ATGCATTCAAGACCAAGAGAAGGACTCGAGTGCCTTTTCGGGCATTTGATCAAAACTAGAAGCTCTCGGAAGATGGTGAAGAAGTCAATCCACAAGGCTATGGGAAACCTGAAGGGAATGGAAAACAAATCTACCTTCTCATCCGCCAGCAAGGACCAAGAGACTATTGCCATTGTTAGCAAGCTCAAAGTCTTTGAATCAGTGCTGTCCTTCATCTTTGGGCCAAAGTCAAAGCCTAGCAGCTGGTCTTTCGTTTCCAAAATTGTGCAGTCTAAGAGGATAGCTTGTGATGAAGAAGTGAAAGCAAATGAATTTGCAGAGGTTGATGCTGCATTGAAGTCAATAAAGAGTGCAGAAAATGCACAAAACCAGCTTAACGATCTGGAATCATGCATTCAAGACCAAGAAGAAGGACTCGAGTGCTTGTTTAGGCAATTGCTCAAAACCAGAGTCTCCCTTCTTAACATCCTGAGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

159

Amino Acids

17.85

Weight (kDa)

9.21

Isoelectric Point (pI)

55.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 21 - 156 2e-36 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 4 cut(s) 9, 197, 337, 398
AluBI AGCT 5 cut(s) 63, 184, 243, 284, 373
AluI AGCT 5 cut(s) 63, 184, 243, 284, 373
Alw26I GTCTC 2 cut(s) 155, 457
Ama87I CYCGRG 2 cut(s) 26, 416
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 240, 329
ApoI RAATTY 1 cut(s) 311
ArsI GACNNNNNNTTYG 2 cut(s) 435, 467
AspS9I GGNCC 2 cut(s) 154, 221
AsuHPI GGTGA 1 cut(s) 88
AvaI CYCGRG 2 cut(s) 26, 416
AvaII GGWCC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 252, 316
BccI CCATC 1 cut(s) 67
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 155, 457
BfaI CTAG 3 cut(s) 57, 237, 478
BisI GCNGC 2 cut(s) 241, 330
BlsI GCNGC 2 cut(s) 242, 331
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 2 cut(s) 26, 416
BmgT120I GGNCC 2 cut(s) 154, 221
BmsI GCATC 1 cut(s) 316
BplI GAGNNNNNCTC 2 cut(s) 9, 41
Bpu10I CCTNAGC 1 cut(s) 470
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 140, 465
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 252, 316
BsgI GTGCAG 2 cut(s) 287, 372
BshFI GGCC 1 cut(s) 223
BsiHKCI CYCGRG 2 cut(s) 26, 416
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 155, 457
BsmI GAATGC 2 cut(s) 4, 393
BsnI GGCC 1 cut(s) 223
BsoBI CYCGRG 2 cut(s) 26, 416
Bsp143I GATC 2 cut(s) 48, 379
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 462
BssMI GATC 2 cut(s) 48, 379
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 148, 182
BstDEI CTNAG 2 cut(s) 273, 470
BstF5I GGATG 2 cut(s) 140, 465
BstKTI GATC 2 cut(s) 51, 382
BstMAI GTCTC 2 cut(s) 155, 457
BstMBI GATC 2 cut(s) 48, 379
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstV1I GCAGC 2 cut(s) 252, 316
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 2 cut(s) 140, 465
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 148, 182
Cfr13I GGNCC 2 cut(s) 154, 221
CviAII CATG 1 cut(s) 390
CviJI RGCY 9 cut(s) 63, 98, 184, 223, 235, 243, 284, 373, 474
CviKI_1 RGCY 9 cut(s) 63, 98, 184, 223, 235, 243, 284, 373, 474
DdeI CTNAG 2 cut(s) 273, 470
DpnI GATC 2 cut(s) 50, 381
DpnII GATC 2 cut(s) 48, 379
EciI GGCGGA 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 2 cut(s) 26, 416
EcoT22I ATGCAT 2 cut(s) 6, 395
FaeI CATG 1 cut(s) 393
FaiI YATR 2 cut(s) 101, 391
FatI CATG 1 cut(s) 389
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 241, 330
FokI GGATG 2 cut(s) 127, 452
Fsp4HI GCNGC 2 cut(s) 241, 330
FspBI CTAG 3 cut(s) 57, 237, 478
GluI GCNGC 2 cut(s) 241, 330
HaeIII GGCC 1 cut(s) 223
Hin1II CATG 1 cut(s) 393
HinfI GANTC 5 cut(s) 24, 197, 386, 414, 450
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 4 cut(s) 9, 383, 398, 469
HpyAV CCTTC 6 cut(s) 14, 106, 145, 220, 404, 467
HpyCH4V TGCA 7 cut(s) 4, 268, 317, 332, 353, 362, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 2 cut(s) 273, 470
Hsp92II CATG 1 cut(s) 393
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 2 cut(s) 48, 379
LpnPI CCDG 6 cut(s) 122, 160, 229, 368, 383, 460
Lsp1109I GCAGC 2 cut(s) 252, 316
LweI GCATC 1 cut(s) 316
MaeI CTAG 3 cut(s) 57, 237, 478
MalI GATC 2 cut(s) 50, 381
MboI GATC 2 cut(s) 48, 379
MboII GAAGA 4 cut(s) 82, 91, 305, 419
MfeI CAATTG 1 cut(s) 434
MluCI AATT 3 cut(s) 261, 311, 434
MlyI GAGTC 3 cut(s) 18, 408, 459
MnlI CCTC 2 cut(s) 270, 313
Mph1103I ATGCAT 2 cut(s) 6, 395
MseI TTAA 2 cut(s) 375, 462
MspA1I CMGCKG 1 cut(s) 243
MunI CAATTG 1 cut(s) 434
Mva1269I GAATGC 2 cut(s) 4, 393
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 2 cut(s) 48, 379
NlaIII CATG 1 cut(s) 393
NsiI ATGCAT 2 cut(s) 6, 395
PaeR7I CTCGAG 2 cut(s) 26, 416
PctI GAATGC 2 cut(s) 4, 393
PfeI GAWTC 2 cut(s) 197, 386
PkrI GCNGC 2 cut(s) 242, 331
PleI GAGTC 3 cut(s) 18, 408, 458
PpsI GAGTC 3 cut(s) 18, 408, 458
PspPI GGNCC 2 cut(s) 154, 221
PspXI VCTCGAGB 2 cut(s) 26, 416
PvuII CAGCTG 1 cut(s) 243
SaqAI TTAA 2 cut(s) 375, 462
SatI GCNGC 2 cut(s) 241, 330
Sau3AI GATC 2 cut(s) 48, 379
Sau96I GGNCC 2 cut(s) 154, 221
SchI GAGTC 3 cut(s) 18, 408, 459
SetI ASST 8 cut(s) 65, 111, 137, 186, 245, 286, 324, 375
SfaNI GCATC 1 cut(s) 316
Sfr274I CTCGAG 2 cut(s) 26, 416
SinI GGWCC 1 cut(s) 154
SlaI CTCGAG 2 cut(s) 26, 416
SmlI CTYRAG 2 cut(s) 26, 416
SmoI CTYRAG 2 cut(s) 26, 416
Sse9I AATT 3 cut(s) 261, 311, 434
SsiI CCGC 1 cut(s) 144
SspMI CTAG 3 cut(s) 57, 237, 478
TaqI TCGA 2 cut(s) 27, 417
TasI AATT 3 cut(s) 261, 311, 434
TfiI GAWTC 2 cut(s) 197, 386
Tru1I TTAA 2 cut(s) 375, 462
Tru9I TTAA 2 cut(s) 375, 462
TscAI CASTG 1 cut(s) 207
TseI GCWGC 2 cut(s) 240, 329
TspDTI ATGAA 3 cut(s) 202, 306, 324
TspRI CASTG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 1 cut(s) 311
XhoI CTCGAG 2 cut(s) 26, 416
XspI CTAG 3 cut(s) 57, 237, 478
Zsp2I ATGCAT 2 cut(s) 6, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.