Rh6DG234900

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000199
Physical Location & Seq
Reverse (-)
41835245 .. 41836042
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG234900.1

Sequence Viewer

Length: 798 bp
ATGGCTTACCACACTCGCTCTAACAGCTTCCCCTCCAGGTCACACCCTCTCATTCAAGAAGTTGATGAACAATTGTGCAGATTGACGTCTTTCGAAGCCACCTCCACATCATCATCATCAATAAGCCACCAACTAAATTGTCCGCAAGACTTGCATGATTGTGTTGATATATTGCTTCAATTGCCACTCACCCAACAAGCCTTAGCCCAAGAGAAGCATGAAAAATGGGCTAATGAACTATTAGATGGCTCTCTCAGGCTCTTGGATATTTGCAGCACTGCCAAAGATGCCTTGTTGCCAACCAAGGAATGCATTCAGAACCTTCAGTCAATCGTCCGAAGAAGAGGAGGAGGAGAATCTGATGTACTCGCAAGTGAAGTTAGGAAATACTTAACCTCCAGGAAGATGGTGAAAGAGCCACTCCACAAGGCTATGGGGAATTTGAAGGAAATGGAAAACAAATCCAATTTCTCTTCCCTCAACAAGGACCAAGAGACAATCGCCAATATTAGCAAGCTGAGAGAAGTTGAAGCAGTCACTCGAACAGTGTTTGAACCAATATGGTCCTTCATCTCTGGGCCAAAGGTATCAAGCAGCTGGTCATTTATATCCAAGATGATGCAGTCAAAAAGAGTAGCTTGTGAGGAAGAAGCAGAAGTAAACCAATTTGCAGAGGTGGATGCTGCATTGAAGTCACACAAGAGTTTAGACAATGCACAAAACCAGCTTAACAATCTGGAGTACGTCATGCATCGATCCAAGACCAAAAAGGACTCGAGTGCCTATTTAGGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

265

Amino Acids

29.89

Weight (kDa)

6.72

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 49 - 252 1.1e-64 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 750
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 2 cut(s) 366, 743
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 6 cut(s) 56, 179, 445, 530, 554, 691
AjnI CCWGG 2 cut(s) 35, 398
AluBI AGCT 5 cut(s) 27, 517, 597, 638, 727
AluI AGCT 5 cut(s) 27, 517, 597, 638, 727
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 750
Ama87I CYCGRG 1 cut(s) 775
AoxI GGCC 1 cut(s) 578
ApeKI GCWGC 3 cut(s) 273, 594, 683
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 312
AspS9I GGNCC 3 cut(s) 487, 564, 578
AsuHPI GGTGA 2 cut(s) 181, 421
AsuII TTCGAA 1 cut(s) 93
AvaI CYCGRG 1 cut(s) 775
AvaII GGWCC 2 cut(s) 487, 564
BbvI GCAGC 3 cut(s) 285, 606, 670
BccI CCATC 2 cut(s) 239, 400
BciT130I CCWGG 2 cut(s) 37, 400
BcoDI GTCTC 1 cut(s) 488
BisI GCNGC 3 cut(s) 274, 595, 684
BlsI GCNGC 3 cut(s) 275, 596, 685
Bme1390I CCNGG 2 cut(s) 37, 400
Bme18I GGWCC 2 cut(s) 487, 564
BmeT110I CYCGRG 1 cut(s) 775
BmgT120I GGNCC 3 cut(s) 487, 564, 578
BmrFI CCNGG 2 cut(s) 37, 400
BmsI GCATC 4 cut(s) 277, 609, 670, 760
BpmI CTGGAG 3 cut(s) 19, 382, 758
Bpu10I CCTNAGC 1 cut(s) 202
Bpu14I TTCGAA 1 cut(s) 93
Bsa29I ATCGAT 1 cut(s) 754
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 1 cut(s) 484
BseBI CCWGG 2 cut(s) 37, 400
BseCI ATCGAT 1 cut(s) 754
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 268, 509
BseRI GAGGAG 3 cut(s) 360, 363, 366
BseXI GCAGC 3 cut(s) 285, 606, 670
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 1 cut(s) 580
BshVI ATCGAT 1 cut(s) 754
BsiHKCI CYCGRG 1 cut(s) 775
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 488
BsmI GAATGC 2 cut(s) 312, 314
BsnI GGCC 1 cut(s) 580
BsoBI CYCGRG 1 cut(s) 775
Bsp119I TTCGAA 1 cut(s) 93
Bsp143I GATC 1 cut(s) 755
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 2 cut(s) 267, 510
BspDI ATCGAT 1 cut(s) 754
BspPI GGATC 1 cut(s) 750
BspT104I TTCGAA 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 1 cut(s) 755
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 37, 400
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 2 cut(s) 337, 478
BstACI GRCGYC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 515
BstDEI CTNAG 3 cut(s) 202, 254, 518
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 1 cut(s) 685
BstKTI GATC 1 cut(s) 758
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 1 cut(s) 755
BstMWI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
BstNI CCWGG 2 cut(s) 37, 400
BstSCI CCNGG 2 cut(s) 35, 398
BstV1I GCAGC 3 cut(s) 285, 606, 670
BstXI CCANNNNNNTGG 1 cut(s) 406
Bsu15I ATCGAT 1 cut(s) 754
BsuRI GGCC 1 cut(s) 580
BsuTUI ATCGAT 1 cut(s) 754
BtsCI GGATG 1 cut(s) 685
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 552
Cac8I GCNNGC 1 cut(s) 515
Cfr13I GGNCC 3 cut(s) 487, 564, 578
ClaI ATCGAT 1 cut(s) 754
Csp6I GTAC 2 cut(s) 365, 742
CviAII CATG 3 cut(s) 155, 218, 748
CviQI GTAC 2 cut(s) 365, 742
DdeI CTNAG 3 cut(s) 202, 254, 518
DpnI GATC 1 cut(s) 757
DpnII GATC 1 cut(s) 755
Eam1104I CTCTTC 2 cut(s) 337, 478
EarI CTCTTC 2 cut(s) 337, 478
Eco130I CCWWGG 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 487, 564
Eco57I CTGAAG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 775
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoRII CCWGG 2 cut(s) 35, 398
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 2 cut(s) 314, 753
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 3 cut(s) 158, 221, 751
FaiI YATR 7 cut(s) 156, 170, 219, 434, 562, 608, 749
FalI AAGNNNNNCTT 2 cut(s) 622, 654
FatI CATG 3 cut(s) 154, 217, 747
Fnu4HI GCNGC 3 cut(s) 274, 595, 684
FokI GGATG 1 cut(s) 692
Fsp4HI GCNGC 3 cut(s) 274, 595, 684
GluI GCNGC 3 cut(s) 274, 595, 684
GsuI CTGGAG 3 cut(s) 19, 382, 758
HaeIII GGCC 1 cut(s) 580
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 3 cut(s) 158, 221, 751
HinfI GANTC 2 cut(s) 356, 773
HphI GGTGA 2 cut(s) 181, 421
Hpy166II GTNNAC 1 cut(s) 661
Hpy188I TCNGA 3 cut(s) 318, 338, 361
Hpy188III TCNNGA 2 cut(s) 56, 737
Hpy8I GTNNAC 1 cut(s) 661
HpyAV CCTTC 3 cut(s) 332, 439, 577
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 2 cut(s) 86, 744
HpyCH4V TGCA 9 cut(s) 78, 154, 273, 312, 622, 671, 686, 716, 751
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
HpyF3I CTNAG 3 cut(s) 202, 254, 518
HpySE526I ACGT 2 cut(s) 86, 744
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 3 cut(s) 158, 221, 751
Kzo9I GATC 1 cut(s) 755
LpnPI CCDG 9 cut(s) 22, 49, 241, 385, 412, 561, 583, 722, 737
Lsp1109I GCAGC 3 cut(s) 285, 606, 670
LweI GCATC 4 cut(s) 277, 609, 670, 760
MaeII ACGT 2 cut(s) 86, 744
MaeIII GTNAC 3 cut(s) 39, 535, 693
MalI GATC 1 cut(s) 757
MboI GATC 1 cut(s) 755
MboII GAAGA 5 cut(s) 351, 354, 415, 465, 659
MfeI CAATTG 3 cut(s) 71, 179, 793
MluCI AATT 7 cut(s) 71, 136, 179, 439, 466, 665, 793
MlyI GAGTC 1 cut(s) 767
Mph1103I ATGCAT 2 cut(s) 314, 753
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 2 cut(s) 392, 729
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 597
MspR9I CCNGG 2 cut(s) 37, 400
MunI CAATTG 3 cut(s) 71, 179, 793
Mva1269I GAATGC 2 cut(s) 312, 314
MvaI CCWGG 2 cut(s) 37, 400
MwoI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
NdeII GATC 1 cut(s) 755
NlaIII CATG 3 cut(s) 158, 221, 751
NmuCI GTSAC 3 cut(s) 39, 535, 693
NsiI ATGCAT 2 cut(s) 314, 753
NspV TTCGAA 1 cut(s) 93
PaeR7I CTCGAG 1 cut(s) 775
PctI GAATGC 2 cut(s) 312, 314
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 3 cut(s) 275, 596, 685
PleI GAGTC 1 cut(s) 767
PpsI GAGTC 1 cut(s) 767
Psp6I CCWGG 2 cut(s) 35, 398
PspGI CCWGG 2 cut(s) 35, 398
PspPI GGNCC 3 cut(s) 487, 564, 578
PspXI VCTCGAGB 1 cut(s) 775
PvuII CAGCTG 1 cut(s) 597
RsaI GTAC 2 cut(s) 366, 743
RsaNI GTAC 2 cut(s) 365, 742
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 2 cut(s) 392, 729
SatI GCNGC 3 cut(s) 274, 595, 684
Sau3AI GATC 1 cut(s) 755
Sau96I GGNCC 3 cut(s) 487, 564, 578
SchI GAGTC 1 cut(s) 767
ScrFI CCNGG 2 cut(s) 37, 400
SfaNI GCATC 4 cut(s) 277, 609, 670, 760
Sfr274I CTCGAG 1 cut(s) 775
SfuI TTCGAA 1 cut(s) 93
SinI GGWCC 2 cut(s) 487, 564
SlaI CTCGAG 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
Sse9I AATT 7 cut(s) 71, 136, 179, 439, 466, 665, 793
SsiI CCGC 1 cut(s) 143
SspI AATATT 1 cut(s) 508
StyD4I CCNGG 2 cut(s) 35, 398
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 2 cut(s) 89, 747
TaqI TCGA 4 cut(s) 93, 541, 754, 776
TasI AATT 7 cut(s) 71, 136, 179, 439, 466, 665, 793
TatI WGTACW 1 cut(s) 364
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 392, 729
Tru9I TTAA 2 cut(s) 392, 729
TscAI CASTG 2 cut(s) 283, 552
TseFI GTSAC 3 cut(s) 39, 535, 693
TseI GCWGC 3 cut(s) 273, 594, 683
Tsp45I GTSAC 3 cut(s) 39, 535, 693
TspDTI ATGAA 4 cut(s) 81, 234, 249, 559
TspRI CASTG 2 cut(s) 283, 552
VpaK11BI GGWCC 2 cut(s) 487, 564
XagI CCTNNNNNAGG 1 cut(s) 482
XapI RAATTY 1 cut(s) 439
XhoI CTCGAG 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 312
ZraI GACGTC 1 cut(s) 87
Zsp2I ATGCAT 2 cut(s) 314, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.