Rh6AG237500

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000199
Physical Location & Seq
Reverse (-)
42308426 .. 42308707
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG237500.1

Sequence Viewer

Length: 282 bp
ATGATCCACAAAGCTGTGGTGAATCTCAAAGGAATGGAAACGAAATCCACTTTGTCTTCCGTCAGCAAGGACCATAAGACTATTGCCAGTGTTTGCATGTTGAGAGATGTTGAACCAGTCACACTCTCAGTGTTTGAATCACTACTGTCCTTCATCTCTGGGCCAAAGTCAAAACCAAGCGGCTGGTCATTGGTTACCAAGATAATGCAGACAAAGAGTACTGCTTGTGAAGATGAAAAAGAGAAAGAAAAAAAGAATTTGCAGAAGTGGATGAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

93

Amino Acids

10.44

Weight (kDa)

9.48

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 2 - 89 3.7e-20 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 2 cut(s) 113, 137
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
AoxI GGCC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 2 cut(s) 70, 161
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 48
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmcAI AGTACT 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 70, 161
BpiI GAAGAC 1 cut(s) 48
Bse1I ACTGG 2 cut(s) 87, 116
BseGI GGATG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 2 cut(s) 87, 116
BshFI GGCC 1 cut(s) 163
BsnI GGCC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 140
BsrI ACTGG 2 cut(s) 87, 116
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 127
BstEII GGTNACC 1 cut(s) 193
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstNSI RCATGY 1 cut(s) 100
BstPI GGTNACC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 183
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 94, 135
Cfr13I GGNCC 2 cut(s) 70, 161
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 97
CviJI RGCY 3 cut(s) 14, 163, 183
CviKI_1 RGCY 3 cut(s) 14, 163, 183
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 127
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 70
Eco91I GGTNACC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 193
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 75, 98
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 163
Hin1II CATG 1 cut(s) 100
HinfI GANTC 2 cut(s) 22, 137
HphI GGTGA 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 96, 208, 262
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 4 cut(s) 100, 129, 144, 169
MaeIII GTNAC 2 cut(s) 118, 193
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 48, 242
MluCI AATT 1 cut(s) 256
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 1 cut(s) 100
PfeI GAWTC 2 cut(s) 22, 137
PkrI GCNGC 1 cut(s) 182
PspEI GGTNACC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 70, 161
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 2 cut(s) 70, 161
ScaI AGTACT 1 cut(s) 220
SetI ASST 1 cut(s) 16
SgeI CNNG 9 cut(s) 79, 99, 109, 128, 171, 189, 196, 211, 237
SinI GGWCC 1 cut(s) 70
Sse9I AATT 1 cut(s) 256
SsiI CCGC 1 cut(s) 180
TaaI ACNGT 1 cut(s) 147
TasI AATT 1 cut(s) 256
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 2 cut(s) 22, 137
TscAI CASTG 2 cut(s) 94, 135
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 142, 249
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 2 cut(s) 94, 135
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 256
XceI RCATGY 1 cut(s) 100
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.