AT4G35210

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000199
Physical Location & Seq
Forward (+)
16751224 .. 16752239
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35210.1

Sequence Viewer

Length: 753 bp
ATGGCAGTCTCCTTCCATGTTCGATCTAGCAGCTACCCTTCAAGGCAACACCCTCAAGCCGCTCATGTCGATGAGCAATTAACCCGATTGAGATCTTCTGGGACAGCTTCTTCATCTTCTATCTGCCAGAGACTTAGCAACCTTCAAGACTTACATGATTCTCTTGAAAAGATGATTCGCTTATCTGTCACCAACCAGGCTTTATCTCAAGATCAGATTGAGAAGCTTCTTGATGGATCCATCAAAATCTTGGACCTATGCAGCATTTCTAAGGATGGTTTGTCGCAAATGAAAGAGAGTCTCAAGGAGATCCAATCGATTGTAAGAAGAAAGCGTGGAGATCTATCCGCTGAGGTCAAGAAATACTTAGCCTCAAGAAAGTTTCTCAAGAAATCATTCGAAAAAGTACTCAAGAGTTTAAAAACAAGCCAAAACAAAAACGACGCTTTGGCTGTGTTTGGAGAAGCAGAAACTGTAACAATTGCTTTGTTTGAAAGTCTATTTAGCTTCATGTCCGGATCAAAGGCTTGTGGAAAATGGTCACTGGTCTCAAAGATGATGAGCCAAAGCAAAGGTACATGTGAAGCTGAAGCAAATGAATTCACAAGAGTAGACATGGAGTTCCAATCCGAAAAGTCGTTACAAATGGAGGATGTGCAGAACTTAGAAATATGCATTCAAGATCTTGAAGATGGGATTGGGTCACTCTCTAAATCATTGATCAAATACAGAGTCTCTATTCTTAACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

250

Amino Acids

27.94

Weight (kDa)

8.72

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 45 - 250 2.8e-58 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 612
AccIII TCCGGA 1 cut(s) 515
AciI CCGC 2 cut(s) 60, 348
AclWI GGATC 4 cut(s) 231, 244, 304, 526
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 2 cut(s) 408, 577
AflIII ACRYGT 1 cut(s) 578
AgsI TTSAA 6 cut(s) 42, 146, 167, 494, 680, 689
AjnI CCWGG 1 cut(s) 195
AjuI GAANNNNNNNTTGG 2 cut(s) 681, 713
AluBI AGCT 5 cut(s) 33, 107, 226, 507, 587
AluI AGCT 5 cut(s) 33, 107, 226, 507, 587
Alw26I GTCTC 5 cut(s) 13, 124, 305, 553, 739
AlwI GGATC 4 cut(s) 231, 244, 304, 526
AlwNI CAGNNNCTG 1 cut(s) 473
Aor13HI TCCGGA 1 cut(s) 515
ApeKI GCWGC 2 cut(s) 30, 261
ApoI RAATTY 1 cut(s) 599
ArsI GACNNNNNNTTYG 2 cut(s) 717, 749
Asp700I GAANNNNTTC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 181
AsuII TTCGAA 1 cut(s) 399
AvaII GGWCC 1 cut(s) 253
BamHI GGATCC 1 cut(s) 236
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 42, 273
BccI CCATC 4 cut(s) 227, 248, 269, 686
BciT130I CCWGG 1 cut(s) 197
BclI TGATCA 1 cut(s) 720
BcoDI GTCTC 5 cut(s) 13, 124, 305, 553, 739
BfaI CTAG 1 cut(s) 27
BglII AGATCT 3 cut(s) 92, 340, 682
BisI GCNGC 3 cut(s) 31, 60, 262
BlsI GCNGC 3 cut(s) 32, 61, 263
BmcAI AGTACT 1 cut(s) 408
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 399
BpuEI CTTGAG 6 cut(s) 39, 192, 287, 358, 371, 395
Bsa29I ATCGAT 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 553
BsaWI WCCGGW 1 cut(s) 515
Bse1I ACTGG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 91
BseAI TCCGGA 1 cut(s) 515
BseBI CCWGG 1 cut(s) 197
BseCI ATCGAT 1 cut(s) 317
BseGI GGATG 2 cut(s) 280, 658
BseJI GATNNNNATC 1 cut(s) 91
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 549
BseXI GCAGC 2 cut(s) 42, 273
BsgI GTGCAG 1 cut(s) 677
BshVI ATCGAT 1 cut(s) 317
BsiSI CCGG 1 cut(s) 516
BslFI GGGAC 1 cut(s) 115
BsmAI GTCTC 5 cut(s) 13, 124, 305, 553, 739
BsmFI GGGAC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 675
Bso31I GGTCTC 1 cut(s) 553
Bsp119I TTCGAA 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 515
Bsp143I GATC 9 cut(s) 23, 92, 211, 236, 309, 340, 518, 682, 720
BspACI CCGC 2 cut(s) 60, 348
BspCNI CTCAG 1 cut(s) 343
BspDI ATCGAT 1 cut(s) 317
BspEI TCCGGA 1 cut(s) 515
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 4 cut(s) 231, 244, 304, 526
BspT104I TTCGAA 1 cut(s) 399
BspTNI GGTCTC 1 cut(s) 553
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 549
BssMI GATC 9 cut(s) 23, 92, 211, 236, 309, 340, 518, 682, 720
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 475
BstBI TTCGAA 1 cut(s) 399
BstDEI CTNAG 5 cut(s) 134, 270, 351, 367, 664
BstF5I GGATG 2 cut(s) 280, 658
BstKTI GATC 9 cut(s) 26, 95, 214, 239, 312, 343, 521, 685, 723
BstMAI GTCTC 5 cut(s) 13, 124, 305, 553, 739
BstMBI GATC 9 cut(s) 23, 92, 211, 236, 309, 340, 518, 682, 720
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 42, 273
BstX2I RGATCY 5 cut(s) 92, 236, 309, 340, 682
BstYI RGATCY 5 cut(s) 92, 236, 309, 340, 682
Bsu15I ATCGAT 1 cut(s) 317
BsuTUI ATCGAT 1 cut(s) 317
BtsCI GGATG 2 cut(s) 280, 658
BtsIMutI CAGTG 1 cut(s) 542
CaiI CAGNNNCTG 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 253
ClaI ATCGAT 1 cut(s) 317
CseI GACGC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 407, 576
CviAII CATG 6 cut(s) 17, 65, 155, 511, 579, 616
CviQI GTAC 2 cut(s) 407, 576
DdeI CTNAG 5 cut(s) 134, 270, 351, 367, 664
DpnI GATC 9 cut(s) 25, 94, 213, 238, 311, 342, 520, 684, 722
DpnII GATC 9 cut(s) 23, 92, 211, 236, 309, 340, 518, 682, 720
DraI TTTAAA 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 553
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 609
EcoRI GAATTC 1 cut(s) 599
EcoRII CCWGG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 677
FaeI CATG 6 cut(s) 20, 68, 158, 514, 582, 619
FaiI YATR 8 cut(s) 18, 66, 156, 259, 512, 580, 617, 673
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 115
FatI CATG 6 cut(s) 16, 64, 154, 510, 578, 615
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 1 cut(s) 612
Fnu4HI GCNGC 3 cut(s) 31, 60, 262
FokI GGATG 2 cut(s) 287, 665
Fsp4HI GCNGC 3 cut(s) 31, 60, 262
FspBI CTAG 1 cut(s) 27
GluI GCNGC 3 cut(s) 31, 60, 262
HapII CCGG 1 cut(s) 516
HgaI GACGC 1 cut(s) 452
Hin1II CATG 6 cut(s) 20, 68, 158, 514, 582, 619
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 4 cut(s) 158, 175, 298, 732
HpaII CCGG 1 cut(s) 516
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 613
Hpy188I TCNGA 2 cut(s) 216, 631
Hpy8I GTNNAC 1 cut(s) 613
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 3 cut(s) 22, 48, 152
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 3 cut(s) 261, 658, 675
HpyF3I CTNAG 5 cut(s) 134, 270, 351, 367, 664
Hsp92II CATG 6 cut(s) 20, 68, 158, 514, 582, 619
Kpn2I TCCGGA 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 9 cut(s) 23, 92, 211, 236, 309, 340, 518, 682, 720
LpnPI CCDG 6 cut(s) 84, 140, 182, 209, 529, 530
Lsp1109I GCAGC 2 cut(s) 42, 273
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 5 cut(s) 187, 475, 540, 639, 702
MalI GATC 9 cut(s) 25, 94, 213, 238, 311, 342, 520, 684, 722
MbiI CCGCTC 1 cut(s) 62
MboI GATC 9 cut(s) 23, 92, 211, 236, 309, 340, 518, 682, 720
MboII GAAGA 5 cut(s) 87, 102, 108, 339, 701
MfeI CAATTG 1 cut(s) 480
MflI RGATCY 5 cut(s) 92, 236, 309, 340, 682
MluCI AATT 3 cut(s) 77, 480, 599
MlyI GAGTC 2 cut(s) 307, 741
MnlI CCTC 4 cut(s) 63, 346, 382, 643
Mph1103I ATGCAT 1 cut(s) 677
MroI TCCGGA 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 3 cut(s) 80, 419, 744
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 675
MvaI CCWGG 1 cut(s) 197
NdeII GATC 9 cut(s) 23, 92, 211, 236, 309, 340, 518, 682, 720
NlaIII CATG 6 cut(s) 20, 68, 158, 514, 582, 619
NlaIV GGNNCC 1 cut(s) 238
NmuCI GTSAC 3 cut(s) 187, 540, 702
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 1 cut(s) 582
NspV TTCGAA 1 cut(s) 399
PciI ACATGT 1 cut(s) 578
PctI GAATGC 1 cut(s) 675
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 158, 175
PkrI GCNGC 3 cut(s) 32, 61, 263
PleI GAGTC 2 cut(s) 306, 740
PpsI GAGTC 2 cut(s) 306, 740
PscI ACATGT 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 5 cut(s) 92, 236, 309, 340, 682
RsaI GTAC 2 cut(s) 408, 577
RsaNI GTAC 2 cut(s) 407, 576
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 80, 419, 744
SatI GCNGC 3 cut(s) 31, 60, 262
Sau3AI GATC 9 cut(s) 23, 92, 211, 236, 309, 340, 518, 682, 720
Sau96I GGNCC 1 cut(s) 253
ScaI AGTACT 1 cut(s) 408
SchI GAGTC 2 cut(s) 307, 741
ScrFI CCNGG 1 cut(s) 197
SetI ASST 9 cut(s) 35, 109, 144, 228, 258, 357, 509, 577, 589
SfuI TTCGAA 1 cut(s) 399
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 6 cut(s) 54, 207, 302, 373, 386, 410
SmoI CTYRAG 6 cut(s) 54, 207, 302, 373, 386, 410
Sse9I AATT 3 cut(s) 77, 480, 599
SsiI CCGC 2 cut(s) 60, 348
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 4 cut(s) 22, 69, 317, 399
TasI AATT 3 cut(s) 77, 480, 599
TatI WGTACW 1 cut(s) 406
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 158, 175
Tru1I TTAA 3 cut(s) 80, 419, 744
Tru9I TTAA 3 cut(s) 80, 419, 744
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 3 cut(s) 187, 540, 702
TseI GCWGC 2 cut(s) 30, 261
Tsp45I GTSAC 3 cut(s) 187, 540, 702
TspDTI ATGAA 4 cut(s) 102, 305, 499, 612
TspRI CASTG 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 1 cut(s) 599
XceI RCATGY 1 cut(s) 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 612
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 408
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.