Rh6AG238800

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000199
Physical Location & Seq
Reverse (-)
42442540 .. 42443247
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG238800.1

Sequence Viewer

Length: 708 bp
ATGCATGACTGCGCGGAAAAGTTTCTTCTTTTGCCGCTGAACCAACAAGCCTTGAAACAAGAGTGTGGAGACACATGGATCAATCAACTACTTGATGGATCTTCAAGGCTCCTGGATGTGTGTGGCATCATAAAGGATGCTTTGCTGCAAAAAAAGGAATGCACACATGAACTTCGATCGATTTGGAGCAGAAGACGGGGAGTTGACACGAGCTTTATGAGTGAGGTTTCAAAATACCTTACCTGTAGGAAGGATGTCAAGAAGGCAATCAACAAAGCCTCAAAGCTCAGAGACAGTAAGAGCACAGACAAAACTCATGAGACTCCAGCCATTGTCAAGATGTTGAAAGAGTTAGATGCAGTCACCTCTGCTGTTTTTGAATCCTTGTTTTCCTTTATAGCTAGTTCAAATTTGAAATCAAAGTCAAGCACTTGGTCCTTAGTTTCAAAGCAGGTGCAGCCCAGAAAAGTAGCACGTGAATGTGAAGAAGTCAGAAAAACGAATGAGCTTGAGAAGGTGGATGCTGCATTGCACTTGCTCATGAGTCACAAGACTAAAGCATCTGATAACACAATGCAAGTTGATTATGTGCAAAAAAATTTAAAGGAATTCGAGATCAACATTCAAGATATTGAAGAACGACTTGAGTGCCTCTTTAGGCGCTTAATCAAAGCCAGAGTTTCCCTTCTCAACATATTCAACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

235

Amino Acids

26.99

Weight (kDa)

9.0

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 1 - 232 4.1e-67 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 442
Acc36I ACCTGC 1 cut(s) 442
AccII CGCG 1 cut(s) 14
AciI CCGC 2 cut(s) 14, 35
AclWI GGATC 2 cut(s) 86, 106
AcsI RAATTY 3 cut(s) 409, 598, 608
AcvI CACGTG 1 cut(s) 476
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 4 cut(s) 213, 286, 401, 508
AluI AGCT 4 cut(s) 213, 286, 401, 508
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 3 cut(s) 63, 285, 314
AlwI GGATC 2 cut(s) 86, 106
ApeKI GCWGC 3 cut(s) 145, 457, 524
ApoI RAATTY 3 cut(s) 409, 598, 608
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 2 cut(s) 14, 663
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 355
AvaII GGWCC 1 cut(s) 435
BauI CACGAG 1 cut(s) 208
BbrPI CACGTG 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 3 cut(s) 132, 469, 511
BccI CCATC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 3 cut(s) 63, 285, 314
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 244
BfoI RGCGCY 1 cut(s) 664
BfuAI ACCTGC 1 cut(s) 442
BisI GCNGC 4 cut(s) 35, 146, 458, 525
BlsI GCNGC 4 cut(s) 36, 147, 459, 526
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 5 cut(s) 127, 135, 346, 511, 569
BpiI GAAGAC 1 cut(s) 199
BpmI CTGGAG 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 530, 665
Bsa29I ATCGAT 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 179
BseGI GGATG 4 cut(s) 121, 142, 259, 526
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 1 cut(s) 301
BseXI GCAGC 3 cut(s) 132, 469, 511
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 179
BshVI ATCGAT 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 305
BsmAI GTCTC 3 cut(s) 63, 285, 314
BsmI GAATGC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 4 cut(s) 78, 98, 176, 615
BspACI CCGC 2 cut(s) 14, 35
BspCNI CTCAG 1 cut(s) 300
BspDI ATCGAT 1 cut(s) 179
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 2 cut(s) 316, 540
BspLI GGNNCC 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 442
BspPI GGATC 2 cut(s) 86, 106
BsrDI GCAATG 1 cut(s) 527
BssMI GATC 4 cut(s) 78, 98, 176, 615
BssSI CACGAG 1 cut(s) 208
Bst2BI CACGAG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 287, 439
BstF5I GGATG 4 cut(s) 121, 142, 259, 526
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 664
BstHHI GCGC 2 cut(s) 14, 663
BstKTI GATC 4 cut(s) 81, 101, 179, 618
BstMAI GTCTC 3 cut(s) 63, 285, 314
BstMBI GATC 4 cut(s) 78, 98, 176, 615
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 244
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 132, 469, 511
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 179
BsuTUI ATCGAT 1 cut(s) 179
BtsCI GGATG 4 cut(s) 121, 142, 259, 526
BveI ACCTGC 1 cut(s) 442
CciI TCATGA 2 cut(s) 316, 540
CfoI GCGC 2 cut(s) 14, 663
Cfr13I GGNCC 1 cut(s) 435
ClaI ATCGAT 1 cut(s) 179
CviAII CATG 5 cut(s) 5, 75, 167, 317, 541
DdeI CTNAG 2 cut(s) 287, 439
DpnI GATC 4 cut(s) 80, 100, 178, 617
DpnII GATC 4 cut(s) 78, 98, 176, 615
DraI TTTAAA 1 cut(s) 603
Eco47I GGWCC 1 cut(s) 435
Eco72I CACGTG 1 cut(s) 476
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 5 cut(s) 8, 78, 170, 320, 544
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FatI CATG 5 cut(s) 4, 74, 166, 316, 540
Fnu4HI GCNGC 4 cut(s) 35, 146, 458, 525
FokI GGATG 4 cut(s) 128, 149, 266, 533
Fsp4HI GCNGC 4 cut(s) 35, 146, 458, 525
FspBI CTAG 1 cut(s) 402
GlaI GCGC 2 cut(s) 13, 662
GluI GCNGC 4 cut(s) 35, 146, 458, 525
GsuI CTGGAG 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 664
HhaI GCGC 2 cut(s) 14, 663
Hin1II CATG 5 cut(s) 8, 78, 170, 320, 544
Hin6I GCGC 2 cut(s) 12, 661
HinP1I GCGC 2 cut(s) 12, 661
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 3 cut(s) 322, 380, 544
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 3 cut(s) 290, 494, 565
Hpy188III TCNNGA 6 cut(s) 259, 317, 337, 541, 613, 626
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 4 cut(s) 244, 256, 508, 695
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 9 cut(s) 4, 148, 162, 359, 457, 527, 532, 577, 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 2 cut(s) 287, 439
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 5 cut(s) 8, 78, 170, 320, 544
HspAI GCGC 2 cut(s) 12, 661
Kzo9I GATC 4 cut(s) 78, 98, 176, 615
LmnI GCTCC 2 cut(s) 114, 186
LpnPI CCDG 7 cut(s) 98, 125, 256, 339, 437, 475, 688
Lsp1109I GCAGC 3 cut(s) 132, 469, 511
LweI GCATC 5 cut(s) 127, 135, 346, 511, 569
MaeI CTAG 1 cut(s) 402
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 361, 545
MalI GATC 4 cut(s) 80, 100, 178, 617
MboI GATC 4 cut(s) 78, 98, 176, 615
MboII GAAGA 5 cut(s) 17, 93, 204, 497, 647
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 3 cut(s) 409, 598, 608
MlyI GAGTC 2 cut(s) 316, 553
MnlI CCTC 4 cut(s) 217, 289, 376, 662
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 2 cut(s) 602, 665
MslI CAYNNNNRTG 1 cut(s) 478
MspA1I CMGCKG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 457
NdeII GATC 4 cut(s) 78, 98, 176, 615
NlaIII CATG 5 cut(s) 8, 78, 170, 320, 544
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 2 cut(s) 361, 545
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 2 cut(s) 316, 540
PaqCI CACCTGC 1 cut(s) 442
PctI GAATGC 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 380
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 4 cut(s) 36, 147, 459, 526
Ple19I CGATCG 1 cut(s) 179
PleI GAGTC 2 cut(s) 316, 552
PmaCI CACGTG 1 cut(s) 476
PmlI CACGTG 1 cut(s) 476
PpsI GAGTC 2 cut(s) 316, 552
Ppu21I YACGTR 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 111
PspCI CACGTG 1 cut(s) 476
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 435
PsuI RGATCY 1 cut(s) 98
PvuI CGATCG 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 478
SaqAI TTAA 2 cut(s) 602, 665
SatI GCNGC 4 cut(s) 35, 146, 458, 525
Sau3AI GATC 4 cut(s) 78, 98, 176, 615
Sau96I GGNCC 1 cut(s) 435
SchI GAGTC 2 cut(s) 316, 553
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 305
SfaNI GCATC 5 cut(s) 127, 135, 346, 511, 569
SfcI CTRYAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 478
SmlI CTYRAG 2 cut(s) 509, 644
SmoI CTYRAG 2 cut(s) 509, 644
Sse9I AATT 3 cut(s) 409, 598, 608
SsiI CCGC 2 cut(s) 14, 35
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 478
TaqI TCGA 3 cut(s) 175, 179, 612
TasI AATT 3 cut(s) 409, 598, 608
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 602, 665
Tru9I TTAA 2 cut(s) 602, 665
TseFI GTSAC 2 cut(s) 361, 545
TseI GCWGC 3 cut(s) 145, 457, 524
Tsp45I GTSAC 2 cut(s) 361, 545
TspDTI ATGAA 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 3 cut(s) 409, 598, 608
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.