Rh6DG236200

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000199
Physical Location & Seq
Forward (+)
42084032 .. 42084721
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG236200.1

Sequence Viewer

Length: 690 bp
ATGGCTTACCACACTCGCTCTAACAGCTTTCCCTCAAGGCCACACCCTCTTTTTCAAGAAGTTGATGAACATTTGTGCAGATTGAGGTCTTCCGAAGCCACTTCCACATCTTCATCCTCAATAAGAAAAAAACTAAATGGCCTGCAAGACATGCTTGATTGTGTTGATATGTTGCTTCAGTTGCAAGGCACCCAACAAGTATTAGCACAAGAGCAGCAACAAAAATGGGCTAATGAGCTATTAGACGGCTCTCTCTGGCTCTTGGATATTTGCAGCACCGCAAAGGATGCCATCTCGCAAACGAAGGAGTCCATACAAGACCTTCAATCAATCATTAGAAGAAAACGGGGAGGTAAAACTGGACTCACAAGTGAGGTCAGGAAATACTTGAGCTCTCGGAAGATGGTGAAGAAGTCAATCCACAAGGCTATGGGAAACCTGAAGGGAATGGAAAACAAATCTACTTTCTCATCCGCCAGCAAGGACCAAGAGACTATTGCCATTGTTAGCAAGCTAAGAGATGTTGAAGCAATTACTCTCAGAGTCTCTGAATCAGTGCTGTCCTTCATCTCTGGGCCAAAGTCAAAGCCTAGCAGCTGGTCTTTCGTTTCCAAAATTGTGCAGTCTAAGAGGATAGCTTGTGATGAAGAAGCGAATGTAATGAATTTGCAGAGGTTGATGCTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

229

Amino Acids

25.74

Weight (kDa)

9.56

Isoelectric Point (pI)

58.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 44 - 219 1.3e-61 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 2 cut(s) 279, 474
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 2 cut(s) 161, 461
AgsI TTSAA 3 cut(s) 56, 326, 527
AluBI AGCT 6 cut(s) 27, 238, 393, 514, 597, 638
AluI AGCT 6 cut(s) 27, 238, 393, 514, 597, 638
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 2 cut(s) 485, 550
AoxI GGCC 3 cut(s) 38, 139, 575
ApeKI GCWGC 4 cut(s) 214, 273, 594, 682
ApoI RAATTY 1 cut(s) 664
AspS9I GGNCC 2 cut(s) 484, 575
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 484
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 4 cut(s) 226, 285, 606, 669
BccI CCATC 2 cut(s) 299, 397
BceAI ACGGC 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 485, 550
BfaI CTAG 1 cut(s) 591
BisI GCNGC 4 cut(s) 215, 274, 595, 683
BlsI GCNGC 4 cut(s) 216, 275, 596, 684
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 484, 575
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 2 cut(s) 277, 669
BpiI GAAGAC 1 cut(s) 81
BpuEI CTTGAG 2 cut(s) 19, 409
Bse1I ACTGG 1 cut(s) 364
BseGI GGATG 3 cut(s) 113, 292, 470
BseMII CTCAG 1 cut(s) 553
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 4 cut(s) 226, 285, 606, 669
BsgI GTGCAG 2 cut(s) 97, 641
BshFI GGCC 3 cut(s) 40, 141, 577
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 395
BsmAI GTCTC 2 cut(s) 485, 550
BsnI GGCC 3 cut(s) 40, 141, 577
Bsp1286I GDGCHC 1 cut(s) 395
BspACI CCGC 2 cut(s) 279, 474
BspANI GGCC 3 cut(s) 40, 141, 577
BspCNI CTCAG 1 cut(s) 552
BspLI GGNNCC 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 364
BstAPI GCANNNNNTGC 2 cut(s) 151, 287
BstC8I GCNNGC 3 cut(s) 143, 478, 512
BstDEI CTNAG 3 cut(s) 515, 539, 627
BstF5I GGATG 3 cut(s) 113, 292, 470
BstMAI GTCTC 2 cut(s) 485, 550
BstMWI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
BstNSI RCATGY 1 cut(s) 154
BstV1I GCAGC 4 cut(s) 226, 285, 606, 669
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 3 cut(s) 40, 141, 577
BtsCI GGATG 3 cut(s) 113, 292, 470
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 3 cut(s) 143, 478, 512
Cfr13I GGNCC 2 cut(s) 484, 575
CviAII CATG 1 cut(s) 151
DdeI CTNAG 3 cut(s) 515, 539, 627
EciI GGCGGA 1 cut(s) 463
Ecl136II GAGCTC 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 161, 461
EcoICRI GAGCTC 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 395
FaeI CATG 1 cut(s) 154
FaiI YATR 4 cut(s) 152, 170, 314, 431
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 4 cut(s) 215, 274, 595, 683
FokI GGATG 3 cut(s) 100, 299, 457
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 4 cut(s) 215, 274, 595, 683
FspBI CTAG 1 cut(s) 591
GluI GCNGC 4 cut(s) 215, 274, 595, 683
HaeIII GGCC 3 cut(s) 40, 141, 577
Hin1II CATG 1 cut(s) 154
HinfI GANTC 4 cut(s) 308, 363, 543, 551
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 4 cut(s) 94, 399, 542, 550
Hpy188III TCNNGA 2 cut(s) 56, 379
HpyAV CCTTC 4 cut(s) 298, 332, 436, 574
HpyCH4V TGCA 7 cut(s) 78, 145, 184, 273, 622, 670, 685
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
HpyF3I CTNAG 3 cut(s) 515, 539, 627
Hsp92II CATG 1 cut(s) 154
LpnPI CCDG 8 cut(s) 155, 241, 345, 364, 452, 490, 558, 583
Lsp1109I GCAGC 4 cut(s) 226, 285, 606, 669
LweI GCATC 2 cut(s) 277, 669
MaeI CTAG 1 cut(s) 591
MboII GAAGA 6 cut(s) 81, 102, 351, 412, 421, 659
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 3 cut(s) 531, 615, 664
MlyI GAGTC 3 cut(s) 317, 357, 552
MnlI CCTC 8 cut(s) 43, 57, 78, 127, 344, 367, 624, 666
MspA1I CMGCKG 1 cut(s) 597
MwoI GCNNNNNNNGC 4 cut(s) 24, 151, 181, 287
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 190
NspI RCATGY 1 cut(s) 154
PfeI GAWTC 1 cut(s) 551
PkrI GCNGC 4 cut(s) 216, 275, 596, 684
PleI GAGTC 3 cut(s) 316, 357, 551
PpsI GAGTC 3 cut(s) 316, 357, 551
Psp124BI GAGCTC 1 cut(s) 395
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 484, 575
PvuII CAGCTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 395
SatI GCNGC 4 cut(s) 215, 274, 595, 683
Sau96I GGNCC 2 cut(s) 484, 575
SchI GAGTC 3 cut(s) 317, 357, 552
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 2 cut(s) 277, 669
SinI GGWCC 1 cut(s) 484
SmlI CTYRAG 2 cut(s) 34, 388
SmoI CTYRAG 2 cut(s) 34, 388
Sse9I AATT 3 cut(s) 531, 615, 664
SsiI CCGC 2 cut(s) 279, 474
SspMI CTAG 1 cut(s) 591
SstI GAGCTC 1 cut(s) 395
TasI AATT 3 cut(s) 531, 615, 664
TfiI GAWTC 1 cut(s) 551
TscAI CASTG 1 cut(s) 561
TseI GCWGC 4 cut(s) 214, 273, 594, 682
TspDTI ATGAA 5 cut(s) 81, 102, 556, 660, 677
TspRI CASTG 1 cut(s) 561
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 1 cut(s) 664
XceI RCATGY 1 cut(s) 154
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.