RchiOBHm_Chr1g0358831

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000199
Physical Location & Seq
Reverse (-)
50834124 .. 50834733
610 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58392

Sequence Viewer

Length: 252 bp
ATGCGTAGAAGACGGGGAGTTGACATGAGCTTCATGAGTGAGGTTCCAAAATACCATACCTGTAGGAAGGATGTCAAGAAGGCAATCAATAAAGCCTCAAAGCTCAGAGAAAGAACGAGCACAGACAAAACTCATGAGACTCCAGCCTTTGTGAAGATGTTGAAAGAGTTAGATGCAGGCACCTCTGCCATGTTTGAATCCTTGTTTTCCTTTATAGCTGGTTCAGATTTCAAATCAAAGTCAAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

83

Amino Acids

9.47

Weight (kDa)

10.0

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 1 - 81 3e-13 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AgsI TTSAA 3 cut(s) 163, 197, 232
AluBI AGCT 3 cut(s) 30, 103, 218
AluI AGCT 3 cut(s) 30, 103, 218
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 61
BmiI GGNNCC 2 cut(s) 45, 181
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 126
BseGI GGATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 117
BspHI TCATGA 2 cut(s) 33, 133
BspLI GGNNCC 2 cut(s) 45, 181
BspT107I GGYRCC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 178
CciI TCATGA 2 cut(s) 33, 133
CviAII CATG 4 cut(s) 25, 34, 134, 190
CviJI RGCY 5 cut(s) 30, 95, 103, 146, 218
CviKI_1 RGCY 5 cut(s) 30, 95, 103, 146, 218
DdeI CTNAG 1 cut(s) 104
FaeI CATG 4 cut(s) 28, 37, 137, 193
FaiI YATR 6 cut(s) 26, 35, 57, 135, 191, 215
FatI CATG 4 cut(s) 24, 33, 133, 189
FokI GGATG 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 126
Hin1II CATG 4 cut(s) 28, 37, 137, 193
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 139, 197
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 107, 226
Hpy188III TCNNGA 3 cut(s) 34, 76, 134
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 61, 73
HpyCH4V TGCA 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 4 cut(s) 28, 37, 137, 193
LpnPI CCDG 4 cut(s) 73, 156, 162, 204
LweI GCATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 21, 166
MhlI GDGCHC 1 cut(s) 122
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 3 cut(s) 34, 106, 193
NlaIII CATG 4 cut(s) 28, 37, 137, 193
NlaIV GGNNCC 2 cut(s) 45, 181
PagI TCATGA 2 cut(s) 33, 133
PfeI GAWTC 1 cut(s) 197
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 45, 181
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 122
SetI ASST 6 cut(s) 32, 45, 62, 105, 185, 220
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 61
TfiI GAWTC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.