Rmu_sc0010352.1_g000001

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010352.1
OG0000199
Physical Location & Seq
Reverse (-)
1147 .. 2079
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010352.1_g000001.1.cds

Sequence Viewer

Length: 933 bp
atgcgccccccaacgaacactatatattatgcagctacatttggaaaggagcaggtcattctgattaacagcaaggtcttcacaagacacaaagaacacatggctttccacactcgctccaacagctttccctcaaggccacacccactgtttcaagaaattgatgagcatttgtacagattgaagtcttcgcaggccacctccacatcttcatcgtcaataagccacaaactaagcggtctccaagacttgcatgattgtgtcgataggttgcttcaattgcctctcacccaaaaggccttggcacaagagcagcatcagaaatgggctaatgagctattagatggatctctcaggatcttggatatttgtagcacttccaaagatgccctgatgaaaaccaaggaaaacgtacaagatcttcaatcaatcattcgaagaaagcgtggagatgaatctgcagtactcaagagtgaagcaaggaaatacttgatatccaggaagactgtgaaaaaggctctccacaaagctttggggaacatgaagggaatggcaaacagatcttcgtcttcctgcaacaaggatcaagagactataaccatcgtgagcaagctgagagatgtggaagcagtcactctcgccatgtttgaatcagttctatccttcatctcagggccaaagtcaaagccttacagctggtctttggtttccaagatgttgcagtcaaatagaatagcttgcgaggaagaaacaaaagtaaatgaatttacagaagtggatggtgcattgaagtcattcaagagtggtgacaacacgcacaaccagcttaataatctggaatcatgcattcaaaatcaagaagaagcacttgattgtctatataggcaattgatcaaaacaagagtctcccttctcaacatcctcaaccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

310

Amino Acids

35.16

Weight (kDa)

9.26

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AciI CCGC 1 cut(s) 237
AclWI GGATC 3 cut(s) 355, 365, 591
AcsI RAATTY 1 cut(s) 764
AfaI GTAC 3 cut(s) 176, 414, 465
AgsI TTSAA 8 cut(s) 155, 184, 278, 425, 650, 790, 799, 851
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 8 cut(s) 35, 126, 337, 530, 613, 696, 737, 826
AluI AGCT 8 cut(s) 35, 126, 337, 530, 613, 696, 737, 826
Alw26I GTCTC 3 cut(s) 245, 584, 910
AlwI GGATC 3 cut(s) 355, 365, 591
AoxI GGCC 4 cut(s) 137, 195, 297, 674
ApeKI GCWGC 2 cut(s) 32, 313
ApoI RAATTY 1 cut(s) 764
ArsI GACNNNNNNTTYG 2 cut(s) 888, 920
Asp700I GAANNNNTTC 2 cut(s) 654, 794
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 674
AsuHPI GGTGA 2 cut(s) 280, 818
AsuII TTCGAA 1 cut(s) 436
BarI GAAGNNNNNNTAC 2 cut(s) 405, 437
BbsI GAAGAC 4 cut(s) 70, 180, 509, 561
BbvI GCAGC 2 cut(s) 44, 325
BccI CCATC 3 cut(s) 338, 608, 773
BciT130I CCWGG 1 cut(s) 499
BclI TGATCA 1 cut(s) 891
BcoDI GTCTC 3 cut(s) 245, 584, 910
BfaI CTAG 1 cut(s) 931
BfmI CTRYAG 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 43
BglII AGATCT 2 cut(s) 418, 560
BisI GCNGC 2 cut(s) 33, 314
BlsI GCNGC 2 cut(s) 34, 315
BmcAI AGTACT 1 cut(s) 465
Bme1390I CCNGG 1 cut(s) 499
BmgT120I GGNCC 1 cut(s) 674
BmrFI CCNGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 325, 376
BpiI GAAGAC 4 cut(s) 70, 180, 509, 561
Bpu14I TTCGAA 1 cut(s) 436
BpuEI CTTGAG 2 cut(s) 118, 452
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 300, 402
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 2 cut(s) 300, 402
BseGI GGATG 2 cut(s) 784, 918
BseMII CTCAG 3 cut(s) 367, 605, 684
BseXI GCAGC 2 cut(s) 44, 325
BshFI GGCC 4 cut(s) 139, 197, 299, 676
BsmAI GTCTC 3 cut(s) 245, 584, 910
BsmI GAATGC 1 cut(s) 846
BsnI GGCC 4 cut(s) 139, 197, 299, 676
Bso31I GGTCTC 1 cut(s) 245
Bsp119I TTCGAA 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 6 cut(s) 347, 357, 418, 560, 583, 891
BspACI CCGC 1 cut(s) 237
BspANI GGCC 4 cut(s) 139, 197, 299, 676
BspCNI CTCAG 3 cut(s) 366, 606, 683
BspMAI CTGCAG 1 cut(s) 463
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 3 cut(s) 355, 365, 591
BspT104I TTCGAA 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 300, 402
BssMI GATC 6 cut(s) 347, 357, 418, 560, 583, 891
BssT1I CCWWGG 2 cut(s) 300, 402
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 2 cut(s) 150, 508
BstAUI TGTACA 1 cut(s) 174
BstBI TTCGAA 1 cut(s) 436
BstC8I GCNNGC 3 cut(s) 195, 611, 739
BstDEI CTNAG 4 cut(s) 233, 353, 614, 670
BstF5I GGATG 2 cut(s) 784, 918
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 6 cut(s) 350, 360, 421, 563, 586, 894
BstMAI GTCTC 3 cut(s) 245, 584, 910
BstMBI GATC 6 cut(s) 347, 357, 418, 560, 583, 891
BstMWI GCNNNNNNNGC 3 cut(s) 123, 280, 823
BstNI CCWGG 1 cut(s) 499
BstSCI CCNGG 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 459
BstV1I GCAGC 2 cut(s) 44, 325
BstV2I GAAGAC 4 cut(s) 70, 180, 509, 561
BstX2I RGATCY 4 cut(s) 347, 357, 418, 560
BstYI RGATCY 4 cut(s) 347, 357, 418, 560
BsuRI GGCC 4 cut(s) 139, 197, 299, 676
BtsCI GGATG 2 cut(s) 784, 918
BtsIMutI CAGTG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 3 cut(s) 195, 611, 739
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 674
Csp6I GTAC 3 cut(s) 175, 413, 464
CviAII CATG 5 cut(s) 100, 254, 541, 643, 843
CviQI GTAC 3 cut(s) 175, 413, 464
DdeI CTNAG 4 cut(s) 233, 353, 614, 670
DpnI GATC 6 cut(s) 349, 359, 420, 562, 585, 893
DpnII GATC 6 cut(s) 347, 357, 418, 560, 583, 891
Eco130I CCWWGG 2 cut(s) 300, 402
Eco147I AGGCCT 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 245
Eco32I GATATC 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 497
EcoRV GATATC 1 cut(s) 495
EcoT14I CCWWGG 2 cut(s) 300, 402
EcoT22I ATGCAT 1 cut(s) 848
ErhI CCWWGG 2 cut(s) 300, 402
FaeI CATG 5 cut(s) 103, 257, 544, 646, 846
FalI AAGNNNNNCTT 2 cut(s) 852, 884
FatI CATG 5 cut(s) 99, 253, 540, 642, 842
FbaI TGATCA 1 cut(s) 891
Fnu4HI GCNGC 2 cut(s) 33, 314
FokI GGATG 2 cut(s) 791, 905
Fsp4HI GCNGC 2 cut(s) 33, 314
FspBI CTAG 1 cut(s) 931
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 33, 314
HaeIII GGCC 4 cut(s) 139, 197, 299, 676
HhaI GCGC 1 cut(s) 6
Hin1II CATG 5 cut(s) 103, 257, 544, 646, 846
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 4 cut(s) 455, 650, 839, 903
HphI GGTGA 2 cut(s) 280, 818
Hpy188I TCNGA 2 cut(s) 63, 321
Hpy188III TCNNGA 8 cut(s) 155, 355, 469, 587, 604, 799, 836, 857
HpyAV CCTTC 3 cut(s) 538, 673, 920
HpyCH4III ACNGT 2 cut(s) 150, 508
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 7 cut(s) 32, 253, 461, 576, 721, 785, 846
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 280, 823
HpyF3I CTNAG 4 cut(s) 233, 353, 614, 670
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 5 cut(s) 103, 257, 544, 646, 846
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 891
Kzo9I GATC 6 cut(s) 347, 357, 418, 560, 583, 891
LmnI GCTCC 2 cut(s) 49, 122
Lsp1109I GCAGC 2 cut(s) 44, 325
LweI GCATC 2 cut(s) 325, 376
MaeI CTAG 1 cut(s) 931
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 631, 806
MalI GATC 6 cut(s) 349, 359, 420, 562, 585, 893
MboI GATC 6 cut(s) 347, 357, 418, 560, 583, 891
MfeI CAATTG 2 cut(s) 278, 887
MflI RGATCY 4 cut(s) 347, 357, 418, 560
MluCI AATT 4 cut(s) 159, 278, 764, 887
MlyI GAGTC 1 cut(s) 912
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 5 cut(s) 142, 211, 294, 736, 932
Mph1103I ATGCAT 1 cut(s) 848
MroXI GAANNNNTTC 2 cut(s) 654, 794
MseI TTAA 2 cut(s) 66, 828
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 696
MspR9I CCNGG 1 cut(s) 499
MunI CAATTG 2 cut(s) 278, 887
Mva1269I GAATGC 1 cut(s) 846
MvaI CCWGG 1 cut(s) 499
MwoI GCNNNNNNNGC 3 cut(s) 123, 280, 823
NdeII GATC 6 cut(s) 347, 357, 418, 560, 583, 891
NlaIII CATG 5 cut(s) 103, 257, 544, 646, 846
NmuCI GTSAC 2 cut(s) 631, 806
NsiI ATGCAT 1 cut(s) 848
NspV TTCGAA 1 cut(s) 436
PceI AGGCCT 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 442
PctI GAATGC 1 cut(s) 846
PdmI GAANNNNTTC 2 cut(s) 654, 794
PfeI GAWTC 3 cut(s) 455, 650, 839
PfoI TCCNGGA 1 cut(s) 497
PkrI GCNGC 2 cut(s) 34, 315
PleI GAGTC 1 cut(s) 911
PpsI GAGTC 1 cut(s) 911
Psp6I CCWGG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 497
PspPI GGNCC 1 cut(s) 674
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 4 cut(s) 347, 357, 418, 560
PvuII CAGCTG 1 cut(s) 696
RsaI GTAC 3 cut(s) 176, 414, 465
RsaNI GTAC 3 cut(s) 175, 413, 464
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 66, 828
SatI GCNGC 2 cut(s) 33, 314
Sau3AI GATC 6 cut(s) 347, 357, 418, 560, 583, 891
Sau96I GGNCC 1 cut(s) 674
ScaI AGTACT 1 cut(s) 465
SchI GAGTC 1 cut(s) 912
ScrFI CCNGG 1 cut(s) 499
SfaNI GCATC 2 cut(s) 325, 376
SfcI CTRYAG 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 133, 467
SmoI CTYRAG 2 cut(s) 133, 467
Sse9I AATT 4 cut(s) 159, 278, 764, 887
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 1 cut(s) 237
SspMI CTAG 1 cut(s) 931
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 497
StyI CCWWGG 2 cut(s) 300, 402
TaaI ACNGT 2 cut(s) 150, 508
TaiI ACGT 1 cut(s) 414
TaqI TCGA 2 cut(s) 264, 436
TasI AATT 4 cut(s) 159, 278, 764, 887
TatI WGTACW 2 cut(s) 174, 463
TfiI GAWTC 3 cut(s) 455, 650, 839
Tru1I TTAA 2 cut(s) 66, 828
Tru9I TTAA 2 cut(s) 66, 828
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 2 cut(s) 631, 806
TseI GCWGC 2 cut(s) 32, 313
Tsp45I GTSAC 2 cut(s) 631, 806
TspDTI ATGAA 6 cut(s) 201, 410, 468, 557, 655, 777
TspRI CASTG 1 cut(s) 153
XapI RAATTY 1 cut(s) 764
XmnI GAANNNNTTC 2 cut(s) 654, 794
XspI CTAG 1 cut(s) 931
ZrmI AGTACT 1 cut(s) 465
Zsp2I ATGCAT 1 cut(s) 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.