AT4G35200

BEST Arabidopsis thaliana protein match is Arabidopsis protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000199
Physical Location & Seq
Reverse (-)
16749062 .. 16749964
903 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35200.1

Sequence Viewer

Length: 762 bp
ATGGCAGTCTCCTTCCATGTTCGATCTAACAGCTACCCTTCGAGACAACACCCTCAAGCCGCTCATGTCGATGAGCAATTGACCAGATTGAGATCTTCTGATTCAGCCTCTTCATCTTCTATCTGCCAGAGACTTAGCAACCTTCAAGATTTACATGATTCTCTTGAAAAGATGATTCGCTTGTCTGTCACCAACCTAGCTTTATCTCAAGATCAGATTGAGAAACTTCTTGATGGATCTCTCAGGATCTTAGATTTGTGCAATATAGCCAAGGATGCGATTTCACAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTACGAAGAAAGCCTGGAGATCTATCCGGAGAGGTCAAGAAATACTTAGTCTCAAGAAAGTTCCTCAAGAAATCACTCCAAAAAGTAATCAAGAGTTTGAAAGTGTGCCAAAGCAAAGATTCCACCAATGCATCTTTGGTTGTATTTGGAAGAGCAGAAGCTGTAACAATGGCTCTGTTTGAATCTCTGTTTAGCTTCATGTCCGGATCAAAGGCTTGTGGGAAATGGTCATTGGTCTCAAAGATGATGAGCCAAAACAAAGTTACATGTGAAGCAGAAGCAAATGAATTCACAAGGATCGATTCTGAGTTCCAATCCGAAAAGTCGTTGCAGATGGAGGATGTGCAGAACTTAGAGTCATGCATTCAAGATCTTGAAGATGGAATTGAGTCACTCTCTAAATCATTAATCAAATACAGAGTTTCAATCCTTAACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

253

Amino Acids

28.35

Weight (kDa)

8.47

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 45 - 253 4.8e-58 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17043 AT2G17070 AT2G17080 AT4G35200 AT4G35210
fragaria_vesca FvH4_2g16200 FvH4_2g16201 FvH4_2g16202 FvH4_2g16203 FvH4_2g16204 FvH4_2g16205 FvH4_2g16220 FvH4_2g16230 FvH4_2g16240 FvH4_2g16270 FvH4_2g16280 FvH4_2g16290 FvH4_2g16310 FvH4_2g16311 FvH4_2g16313
malus_domestica MD02G1121100.v1.1 MD05G1130600.v1.1 MD05G1130700.v1.1 MD05G1130800.v1.1 MD05G1131000.v1.1 MD05G1131200.v1.1 MD10G1133600.v1.1 MD10G1134000.v1.1 MD10G1134100.v1.1 MD10G1134300.v1.1 MD12G1141200.v1.1
prunus_persica Prupe.2G076800_v2.0.a1 Prupe.2G142500_v2.0.a1 Prupe.2G142900_v2.0.a1 Prupe.8G175000_v2.0.a1 Prupe.8G175200_v2.0.a1 Prupe.8G175300_v2.0.a1 Prupe.8G175400_v2.0.a1 Prupe.8G175600_v2.0.a1 Prupe.8G175700_v2.0.a1 Prupe.8G175800_v2.0.a1 Prupe.8G175900_v2.0.a1 Prupe.8G176000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358831 RchiOBHm_Chr6g0279881 RchiOBHm_Chr6g0279891 RchiOBHm_Chr6g0279901 RchiOBHm_Chr6g0279931 RchiOBHm_Chr6g0279941 RchiOBHm_Chr6g0280051 RchiOBHm_Chr6g0280061 RchiOBHm_Chr6g0280071
rosa_laevigata RLG00000002309 RLG00000013093 RLG00000013094 RLG00000013099 RLG00000013104 RLG00000013106 RLG00000013107 RLG00000013109 RLG00000013110 RLG00000013111
rosa_multiflora Rmu_co8441615.1_g000001 Rmu_co8465321.1_g000001 Rmu_co8495701.1_g000001 Rmu_sc0002340.1_g000003 Rmu_sc0002504.1_g000006 Rmu_sc0002504.1_g000007 Rmu_sc0002504.1_g000017 Rmu_sc0002504.1_g000018 Rmu_sc0004617.1_g000019 Rmu_sc0008097.1_g000001 Rmu_sc0010352.1_g000001
rosa_roxburghii Rroxscaffold_6G00396480 Rroxscaffold_7G00188440 Rroxscaffold_7G00188450 Rroxscaffold_7G00188460 Rroxscaffold_7G00188470 Rroxscaffold_7G00188480 Rroxscaffold_7G00188490 Rroxscaffold_7G00188530 Rroxscaffold_7G00188540 Rroxscaffold_7G00188550
rosa_rugosa Rorug05G0490200.1 Rorug06G0128800 Rorug06G0128800 Rorug06G0128800 Rorug06G0128900 Rorug06G0128900 Rorug06G0129000 Rorug06G0129100 Rorug06G0129700 Rorug06G0129800 Rorug06G0129900
rosa_samantha Rh5AG427100 Rh6AG237500 Rh6AG237600 Rh6AG237700 Rh6AG237800 Rh6AG237900 Rh6AG238100 Rh6AG238200 Rh6AG238300 Rh6AG238700 Rh6AG238800 Rh6AG239100 Rh6AG239600 Rh6BG241600 Rh6BG241700 Rh6BG241800 Rh6BG241900 Rh6BG242100 Rh6BG242300 Rh6BG242400 Rh6BG243200 Rh6BG243500 Rh6BG243600 Rh6BG243700 Rh6CG243800 Rh6CG243900 Rh6CG244000 Rh6CG244100 Rh6CG244300 Rh6CG244400 Rh6CG245100 Rh6CG245300 Rh6CG245400 Rh6DG234600 Rh6DG234700 Rh6DG234800 Rh6DG234900 Rh6DG235000 Rh6DG235100 Rh6DG236000 Rh6DG236200 Rh6DG236300
rosa_wichuraiana Rw3G023160 Rw4G032750 Rw6G020650 Rw6G020660 Rw6G020680 Rw6G020690 Rw6G020710 Rw6G020750 Rw6G020760 Rw6G020770 Rw6G020780 Rw6G020790 Rw6G020800 Rw6G020810 Rw6G020860 Rw6G020900 Rw6G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccIII TCCGGA 2 cut(s) 347, 524
AciI CCGC 1 cut(s) 60
AclWI GGATC 5 cut(s) 244, 254, 304, 535, 626
AcsI RAATTY 1 cut(s) 608
AflIII ACRYGT 1 cut(s) 587
AgsI TTSAA 7 cut(s) 146, 167, 421, 503, 689, 698, 747
AjnI CCWGG 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AluBI AGCT 4 cut(s) 33, 200, 482, 516
AluI AGCT 4 cut(s) 33, 200, 482, 516
Alw26I GTCTC 6 cut(s) 13, 37, 124, 305, 376, 562
AlwI GGATC 5 cut(s) 244, 254, 304, 535, 626
AlwNI CAGNNNCTG 1 cut(s) 482
Aor13HI TCCGGA 2 cut(s) 347, 524
ApoI RAATTY 1 cut(s) 608
AseI ATTAAT 1 cut(s) 728
AsuHPI GGTGA 1 cut(s) 181
BccI CCATC 3 cut(s) 227, 649, 695
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 6 cut(s) 13, 37, 124, 305, 376, 562
BfaI CTAG 1 cut(s) 197
BglII AGATCT 3 cut(s) 92, 340, 691
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 265, 461
BplI GAGNNNNNCTC 2 cut(s) 701, 733
BpmI CTGGAG 1 cut(s) 357
BpuEI CTTGAG 4 cut(s) 39, 192, 358, 371
Bsa29I ATCGAT 1 cut(s) 621
BsaBI GATNNNNATC 1 cut(s) 91
BsaI GGTCTC 2 cut(s) 305, 562
BsaJI CCNNGG 1 cut(s) 270
BsaWI WCCGGW 2 cut(s) 347, 524
Bse8I GATNNNNATC 1 cut(s) 91
BseAI TCCGGA 2 cut(s) 347, 524
BseBI CCWGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 280, 667
BseJI GATNNNNATC 1 cut(s) 91
BseMII CTCAG 2 cut(s) 256, 618
BsgI GTGCAG 1 cut(s) 686
BshVI ATCGAT 1 cut(s) 621
BsiSI CCGG 2 cut(s) 348, 525
BsmAI GTCTC 6 cut(s) 13, 37, 124, 305, 376, 562
BsmI GAATGC 1 cut(s) 684
Bso31I GGTCTC 2 cut(s) 305, 562
Bsp13I TCCGGA 2 cut(s) 347, 524
BspACI CCGC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 255, 619
BspDI ATCGAT 1 cut(s) 621
BspEI TCCGGA 2 cut(s) 347, 524
BspPI GGATC 5 cut(s) 244, 254, 304, 535, 626
BspQI GCTCTTC 1 cut(s) 466
BspTNI GGTCTC 2 cut(s) 305, 562
BsrBI CCGCTC 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 336
Bst6I CTCTTC 2 cut(s) 115, 466
BstDEI CTNAG 6 cut(s) 134, 242, 250, 367, 627, 673
BstF5I GGATG 2 cut(s) 280, 667
BstMAI GTCTC 6 cut(s) 13, 37, 124, 305, 376, 562
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 591
BstSCI CCNGG 1 cut(s) 334
BstX2I RGATCY 6 cut(s) 92, 236, 246, 309, 340, 691
BstYI RGATCY 6 cut(s) 92, 236, 246, 309, 340, 691
Bsu15I ATCGAT 1 cut(s) 621
BsuTUI ATCGAT 1 cut(s) 621
BtsCI GGATG 2 cut(s) 280, 667
CaiI CAGNNNCTG 1 cut(s) 482
ClaI ATCGAT 1 cut(s) 621
CviAII CATG 7 cut(s) 17, 65, 155, 304, 520, 588, 681
DdeI CTNAG 6 cut(s) 134, 242, 250, 367, 627, 673
Eam1104I CTCTTC 2 cut(s) 115, 466
EarI CTCTTC 2 cut(s) 115, 466
Eco130I CCWWGG 1 cut(s) 270
Eco31I GGTCTC 2 cut(s) 305, 562
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 2 cut(s) 454, 686
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 7 cut(s) 20, 68, 158, 307, 523, 591, 684
FaiI YATR 8 cut(s) 18, 66, 156, 266, 305, 521, 589, 682
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FatI CATG 7 cut(s) 16, 64, 154, 303, 519, 587, 680
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 287, 674
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 357
HapII CCGG 2 cut(s) 348, 525
Hin1II CATG 7 cut(s) 20, 68, 158, 307, 523, 591, 684
HinfI GANTC 8 cut(s) 101, 158, 175, 440, 503, 623, 677, 710
HpaII CCGG 2 cut(s) 348, 525
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 4 cut(s) 100, 216, 628, 640
HpyAV CCTTC 4 cut(s) 22, 48, 152, 290
HpyCH4V TGCA 5 cut(s) 261, 452, 652, 667, 684
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 6 cut(s) 134, 242, 250, 367, 627, 673
Hsp92II CATG 7 cut(s) 20, 68, 158, 307, 523, 591, 684
Kpn2I TCCGGA 2 cut(s) 347, 524
LguI GCTCTTC 1 cut(s) 466
LpnPI CCDG 7 cut(s) 97, 140, 229, 321, 348, 361, 538
LweI GCATC 2 cut(s) 265, 461
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 4 cut(s) 187, 484, 583, 711
MbiI CCGCTC 1 cut(s) 62
MboII GAAGA 6 cut(s) 87, 102, 108, 339, 483, 710
MfeI CAATTG 1 cut(s) 77
MflI RGATCY 6 cut(s) 92, 236, 246, 309, 340, 691
MluCI AATT 3 cut(s) 77, 608, 705
MlyI GAGTC 2 cut(s) 686, 719
MnlI CCTC 5 cut(s) 63, 118, 346, 395, 652
Mph1103I ATGCAT 2 cut(s) 454, 686
MroI TCCGGA 2 cut(s) 347, 524
MseI TTAA 2 cut(s) 728, 753
MslI CAYNNNNRTG 1 cut(s) 69
MspI CCGG 2 cut(s) 348, 525
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 275
NlaIII CATG 7 cut(s) 20, 68, 158, 307, 523, 591, 684
NmuCI GTSAC 2 cut(s) 187, 711
NsiI ATGCAT 2 cut(s) 454, 686
NspI RCATGY 1 cut(s) 591
PciI ACATGT 1 cut(s) 587
PciSI GCTCTTC 1 cut(s) 466
PctI GAATGC 1 cut(s) 684
PfeI GAWTC 6 cut(s) 101, 158, 175, 440, 503, 623
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 2 cut(s) 685, 718
PpsI GAGTC 2 cut(s) 685, 718
PscI ACATGT 1 cut(s) 587
PshBI ATTAAT 1 cut(s) 728
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 6 cut(s) 92, 236, 246, 309, 340, 691
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 466
SaqAI TTAA 2 cut(s) 728, 753
SatI GCNGC 1 cut(s) 60
SchI GAGTC 2 cut(s) 686, 719
ScrFI CCNGG 1 cut(s) 336
SetI ASST 8 cut(s) 35, 144, 198, 202, 301, 357, 484, 518
SfaNI GCATC 2 cut(s) 265, 461
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 4 cut(s) 54, 207, 373, 386
SmoI CTYRAG 4 cut(s) 54, 207, 373, 386
Sse9I AATT 3 cut(s) 77, 608, 705
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 270
TaqI TCGA 4 cut(s) 22, 41, 69, 621
TasI AATT 3 cut(s) 77, 608, 705
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 6 cut(s) 101, 158, 175, 440, 503, 623
Tru1I TTAA 2 cut(s) 728, 753
Tru9I TTAA 2 cut(s) 728, 753
TseFI GTSAC 2 cut(s) 187, 711
Tsp45I GTSAC 2 cut(s) 187, 711
TspDTI ATGAA 4 cut(s) 102, 305, 508, 621
VspI ATTAAT 1 cut(s) 728
XapI RAATTY 1 cut(s) 608
XceI RCATGY 1 cut(s) 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XspI CTAG 1 cut(s) 197
Zsp2I ATGCAT 2 cut(s) 454, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.