AT4G31980

PPPDE putative peptidase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000131
Physical Location & Seq
Forward (+)
15464642 .. 15469204
4563 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31980.1

Sequence Viewer

Length: 2043 bp
ATGTTTTGCAGAAACGTATCGGTGAGGCGGAAGAAGAATTCTGGTACGGTACCGGTTTATCTGAATGTTTACGATCTTACCCCAATGAATGTTTATGGTTACTGGCTCGGAATTGGGATCTATCACTCTGGTCTCGAAGTTCATGGGGTTGAGTATGGATACGGGGCACACGAGAAATCGAGCTCGGGGATTTTTGAGGTGGAGCCAAAGAAGTGTCCTGGTTTCACATTCAGGAAATCGATTCTTGTTGGTGAAACAGAGATGAAGGCTAAAGAAGTTCGAAGCTTTATGGAGAAATTATCAGAAGAGTATCAGGGTAACAAGTACCATCTCATCACAAGGAACTGCAACCATTTCTGCAACCATGTTTCTTTGAAACTTACTCACAAATCAATCCCTAGTTGGGTCAACCGTCTTGCTCGCTTAGGTTTCCTCTGCAACTGTGTCTTGCCGGCTTGCTTGAACGAGACTAAAGTGAAGCGGGTAGGAAAAGACGGGAAGCTGCTCTTGGAAGGAGAAAATACGAAGAAGAAGAAGAGGAAGAAGAAAATACGAAGAAGCCGATCAGGTCCTTTATCTTCGTCTTCTTCAAATGCAAGATTAGATAATACTCCTACACATAACAGATCAATATCAACGGGTAATCCTCCTCTTTCTGCTTCTCCATCTTGTCCTTTGAGACCTCGACTTCCTTCTGTTGCATCTGGAGCTGAAGATCAAAATCCTCCAAGCAGATACCTCAACGCCAGCTTCTGCAGTGAAGTGCAATGTCACCGGCTTTGCTTTGCATATGAGAGGATGAATCAGAATGAAGGTGACGCCCTTGTCGATTCCATCAAAGCGAAGTTAGCCTTTTTATCTTCTCTTTCCACCAAATGCTGTATATACAAGGTACCTAATAAGCTCCGCAGACTCAATCCTGATGCATATACGCCTCGGCTTGTGTCTTTTGGCCCGCTTCATCGTGGTAAAGAAGAGCTTCAAGCTATGGAAGATCAGAAATACAGGTATTTGCTGAGTTTTATCCCTAGAACGAACTCTAGTCTAGAGGACCTTGTTAGACTTGCTAGGACTTGGGAACAAAATGCTCGCAGCTGTTATGCAGAAGATGTGAAACTTCATAGCGATGAGTTTGTTGAGATGTTAGTTGTAGATGGTAGCTTCTTGGTTGAACTTCTTTTGAGGTCTCATTATCCTCGACTTAGAGGCGAGAATGATCGCATATTTGGCAATTCAATGATGATCACCGACGTGTGCCGTGACATGATTTTGATAGAAAATCAGTTACCCTTTTTCGTTGTGAAGGAGATATTTCTTCTCTTGTTGAATTACTACCAACAAGGAACACCTTCAATCATACAGCTCGCGCAACGCCACTTCAGTTATTTCTTGAGCCGCATTGATGATGAGAAGTTTATTACAGAGCCAGAACATTTTGTTGATCTTCTGAGGTCTTGTTATCTGCCACAGTTTCCAATTAAATTAGAATACACTACAGTGAAAGTGGACAATGCACCTGAAGCAACAGAGCTTCACACTGCTGGTGTTAGGTTCAAGCCAGCAGAGACCAGTAGTTGTTTACTTGACATTAGTTTTGCTGATGGAGTACTGAAGATTCCAACCATTGTCGTCGATGATCTCACGGAATCCCTCTACAAAAACATCATTGGGTTTGAACAATGTCGTTGCTCAAATAAAAACTTCCTCGACTACATCATGCTGCTCGGTTGCTTCATTAAATCCCCTACAGATGCTGACTTGCTCATCCACAGTGGGATCATCGTAAACTATCTCGGGAACTCAGTAGATGTTTCAAACTTGTTCAATAGCATCAGCAAAGAGGTTATCTATGACAGAAGATTCTACTTTTCGATGCTCTCTGAGAACCTTCAAGCTTACTGCAACACACCATGGAACAGGTGGAAGGCGATTCTGAGACGTGACTACTTCCACAATCCTTGGGCAGTTGCTTCTGTTTTTGCAGCTTTACTTCTTCTCCTTCTCACTTTCATACAGTCCGTATGCTCTATCTTGGCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247 Peptidase_C97

Protein Analysis

680

Amino Acids

77.68

Weight (kDa)

8.9

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 18 - 152 4.4e-52 PPPDE putative peptidase domain
DUF247 PF03140 295 - 668 5.2e-113 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 824
Acc65I GGTACC 2 cut(s) 49, 892
AccB1I GGYRCC 2 cut(s) 49, 892
AccII CGCG 1 cut(s) 1367
AciI CCGC 5 cut(s) 28, 481, 907, 956, 1396
AclWI GGATC 2 cut(s) 125, 1784
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 4 cut(s) 732, 1363, 1539, 1631
AcyI GRCGYC 1 cut(s) 819
AfaI GTAC 5 cut(s) 46, 51, 326, 894, 1608
AfiI CCNNNNNNNGG 1 cut(s) 403
AflIII ACRYGT 1 cut(s) 1251
AgeI ACCGGT 1 cut(s) 52
AjiI CACGTC 2 cut(s) 1252, 1940
AjnI CCWGG 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AleI CACNNNNGTG 2 cut(s) 1250, 1496
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 6 cut(s) 137, 461, 673, 1191, 1559, 1930
AlwI GGATC 2 cut(s) 125, 1784
AlwNI CAGNNNCTG 2 cut(s) 753, 1754
Ama87I CYCGRG 2 cut(s) 184, 1793
AoxI GGCC 1 cut(s) 952
ApeKI GCWGC 4 cut(s) 502, 1092, 1720, 1982
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 1577, 1609
AsiGI ACCGGT 1 cut(s) 52
Asp700I GAANNNNTTC 2 cut(s) 978, 1348
Asp718I GGTACC 2 cut(s) 49, 892
AspLEI GCGC 1 cut(s) 1369
AspS9I GGNCC 3 cut(s) 569, 953, 1051
AsuHPI GGTGA 5 cut(s) 34, 263, 764, 827, 1237
AsuII TTCGAA 1 cut(s) 280
AvaI CYCGRG 2 cut(s) 184, 1793
AvaII GGWCC 2 cut(s) 569, 1051
BaeGI GKGCMC 1 cut(s) 169
BanI GGYRCC 2 cut(s) 49, 892
BanII GRGCYC 1 cut(s) 185
BauI CACGAG 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 4 cut(s) 489, 1104, 1707, 1994
BccI CCATC 5 cut(s) 336, 673, 842, 1148, 1595
BceAI ACGGC 1 cut(s) 1242
BciT130I CCWGG 1 cut(s) 219
BciVI GTATCC 1 cut(s) 152
BclI TGATCA 1 cut(s) 1242
BcoDI GTCTC 6 cut(s) 137, 461, 673, 1191, 1559, 1930
BfaI CTAG 5 cut(s) 399, 1029, 1041, 1046, 1068
BfmI CTRYAG 3 cut(s) 754, 1494, 1746
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 5 cut(s) 503, 1093, 1396, 1721, 1983
BlsI GCNGC 5 cut(s) 504, 1094, 1397, 1722, 1984
BmcAI AGTACT 1 cut(s) 1608
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 2 cut(s) 569, 1051
BmeT110I CYCGRG 2 cut(s) 184, 1793
BmgBI CACGTC 2 cut(s) 1252, 1940
BmgT120I GGNCC 3 cut(s) 569, 953, 1051
BmiI GGNNCC 3 cut(s) 51, 204, 894
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 5 cut(s) 710, 913, 1741, 1839, 1863
BpiI GAAGAC 1 cut(s) 576
BpmI CTGGAG 1 cut(s) 726
Bpu10I CCTNAGC 1 cut(s) 424
Bpu14I TTCGAA 1 cut(s) 280
BpuEI CTTGAG 1 cut(s) 1411
Bsa29I ATCGAT 1 cut(s) 239
BsaBI GATNNNNATC 2 cut(s) 631, 720
BsaHI GRCGYC 1 cut(s) 819
BsaI GGTCTC 4 cut(s) 137, 673, 1191, 1559
BsaJI CCNNGG 3 cut(s) 935, 1910, 1958
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 1980, 2010
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse118I RCCGGY 3 cut(s) 52, 451, 774
Bse1I ACTGG 2 cut(s) 107, 1569
Bse3DI GCAATG 1 cut(s) 773
Bse8I GATNNNNATC 2 cut(s) 631, 720
BseBI CCWGG 1 cut(s) 219
BseCI ATCGAT 1 cut(s) 239
BseDI CCNNGG 3 cut(s) 935, 1910, 1958
BseGI GGATG 2 cut(s) 804, 1764
BseJI GATNNNNATC 2 cut(s) 631, 720
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMI GCAATG 1 cut(s) 773
BseMII CTCAG 5 cut(s) 1007, 1439, 1815, 1872, 1925
BseNI ACTGG 2 cut(s) 107, 1569
BseRI GAGGAG 1 cut(s) 639
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 4 cut(s) 489, 1104, 1707, 1994
Bsh1236I CGCG 1 cut(s) 1367
BshFI GGCC 1 cut(s) 954
BshNI GGYRCC 2 cut(s) 49, 892
BshTI ACCGGT 1 cut(s) 52
BshVI ATCGAT 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 2 cut(s) 184, 1793
BsiSI CCGG 3 cut(s) 53, 452, 775
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 6 cut(s) 137, 461, 673, 1191, 1559, 1930
BsmBI CGTCTC 1 cut(s) 1930
BsnI GGCC 1 cut(s) 954
Bso31I GGTCTC 4 cut(s) 137, 673, 1191, 1559
BsoBI CYCGRG 2 cut(s) 184, 1793
Bsp119I TTCGAA 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 169, 185
Bsp19I CCATGG 1 cut(s) 1910
BspACI CCGC 5 cut(s) 28, 481, 907, 956, 1396
BspANI GGCC 1 cut(s) 954
BspCNI CTCAG 5 cut(s) 1008, 1440, 1814, 1873, 1926
BspDI ATCGAT 1 cut(s) 239
BspFNI CGCG 1 cut(s) 1367
BspLI GGNNCC 3 cut(s) 51, 204, 894
BspMAI CTGCAG 1 cut(s) 758
BspPI GGATC 2 cut(s) 125, 1784
BspQI GCTCTTC 1 cut(s) 969
BspT104I TTCGAA 1 cut(s) 280
BspT107I GGYRCC 2 cut(s) 49, 892
BspTNI GGTCTC 4 cut(s) 137, 673, 1191, 1559
BsrDI GCAATG 1 cut(s) 773
BsrFI RCCGGY 3 cut(s) 52, 451, 774
BsrI ACTGG 2 cut(s) 107, 1569
BssAI RCCGGY 3 cut(s) 52, 451, 774
BssECI CCNNGG 3 cut(s) 935, 1910, 1958
BssNI GRCGYC 1 cut(s) 819
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 2 cut(s) 1910, 1958
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 7 cut(s) 49, 413, 443, 1470, 1498, 1772, 2016
Bst6I CTCTTC 3 cut(s) 300, 530, 969
BstACI GRCGYC 1 cut(s) 819
BstBI TTCGAA 1 cut(s) 280
BstC8I GCNNGC 8 cut(s) 421, 453, 457, 748, 956, 1090, 1365, 1560
BstDEI CTNAG 7 cut(s) 424, 1016, 1202, 1448, 1801, 1881, 1934
BstDSI CCRYGG 1 cut(s) 1910
BstF5I GGATG 2 cut(s) 804, 1764
BstFNI CGCG 1 cut(s) 1367
BstHHI GCGC 1 cut(s) 1369
BstMAI GTCTC 6 cut(s) 137, 461, 673, 1191, 1559, 1930
BstMWI GCNNNNNNNGC 4 cut(s) 707, 848, 1227, 1520
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 3 cut(s) 754, 1494, 1746
BstSLI GKGCMC 1 cut(s) 169
BstUI CGCG 1 cut(s) 1367
BstV1I GCAGC 4 cut(s) 489, 1104, 1707, 1994
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
Bsu15I ATCGAT 1 cut(s) 239
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 954
BsuTUI ATCGAT 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 1910
BtgZI GCGATG 1 cut(s) 1140
BtrI CACGTC 2 cut(s) 1252, 1940
BtsCI GGATG 2 cut(s) 804, 1764
BtsI GCAGTG 2 cut(s) 763, 1536
BtsIMutI CAGTG 4 cut(s) 763, 1503, 1536, 1777
Cac8I GCNNGC 8 cut(s) 421, 453, 457, 748, 956, 1090, 1365, 1560
CaiI CAGNNNCTG 2 cut(s) 753, 1754
CfoI GCGC 1 cut(s) 1369
Cfr10I RCCGGY 3 cut(s) 52, 451, 774
Cfr13I GGNCC 3 cut(s) 569, 953, 1051
ClaI ATCGAT 1 cut(s) 239
CseI GACGC 1 cut(s) 827
Csp6I GTAC 5 cut(s) 45, 50, 325, 893, 1607
CspAI ACCGGT 1 cut(s) 52
CspCI CAANNNNNGTGG 2 cut(s) 1940, 1975
CviAII CATG 5 cut(s) 143, 365, 1264, 1717, 1911
CviQI GTAC 5 cut(s) 45, 50, 325, 893, 1607
DdeI CTNAG 7 cut(s) 424, 1016, 1202, 1448, 1801, 1881, 1934
DrdI GACNNNNNNGTC 1 cut(s) 824
DseDI GACNNNNNNGTC 1 cut(s) 824
Eam1104I CTCTTC 3 cut(s) 300, 530, 969
EarI CTCTTC 3 cut(s) 300, 530, 969
EciI GGCGGA 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 1910, 1958
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 4 cut(s) 137, 673, 1191, 1559
Eco47I GGWCC 2 cut(s) 569, 1051
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 4 cut(s) 732, 1363, 1539, 1631
Eco88I CYCGRG 2 cut(s) 184, 1793
EcoICRI GAGCTC 1 cut(s) 183
EcoO109I RGGNCCY 2 cut(s) 569, 1051
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 2 cut(s) 1910, 1958
EcoT22I ATGCAT 1 cut(s) 928
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 2 cut(s) 1910, 1958
Esp3I CGTCTC 1 cut(s) 1930
FaeI CATG 5 cut(s) 146, 368, 1267, 1720, 1914
FalI AAGNNNNNCTT 6 cut(s) 491, 523, 836, 868, 963, 995
FatI CATG 5 cut(s) 142, 364, 1263, 1716, 1910
FauI CCCGC 2 cut(s) 474, 963
FauNDI CATATG 1 cut(s) 790
FbaI TGATCA 1 cut(s) 1242
Fnu4HI GCNGC 5 cut(s) 503, 1093, 1396, 1721, 1983
FokI GGATG 2 cut(s) 811, 1751
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 5 cut(s) 503, 1093, 1396, 1721, 1983
FspBI CTAG 5 cut(s) 399, 1029, 1041, 1046, 1068
GlaI GCGC 1 cut(s) 1368
GluI GCNGC 5 cut(s) 503, 1093, 1396, 1721, 1983
GsuI CTGGAG 1 cut(s) 726
HaeIII GGCC 1 cut(s) 954
HapII CCGG 3 cut(s) 53, 452, 775
HgaI GACGC 1 cut(s) 827
HhaI GCGC 1 cut(s) 1369
Hin1I GRCGYC 1 cut(s) 819
Hin1II CATG 5 cut(s) 146, 368, 1267, 1720, 1914
Hin6I GCGC 1 cut(s) 1367
HinP1I GCGC 1 cut(s) 1367
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 2 cut(s) 283, 1893
HinfI GANTC 8 cut(s) 241, 802, 830, 912, 1615, 1646, 1860, 1930
HpaII CCGG 3 cut(s) 53, 452, 775
HphI GGTGA 5 cut(s) 34, 263, 764, 827, 1237
Hpy166II GTNNAC 5 cut(s) 70, 409, 1507, 1580, 1786
Hpy188I TCNGA 8 cut(s) 63, 110, 304, 807, 999, 1449, 1882, 1935
Hpy188III TCNNGA 7 cut(s) 134, 232, 705, 920, 1046, 1390, 1795
Hpy8I GTNNAC 5 cut(s) 70, 409, 1507, 1580, 1786
Hpy99I CGWCG 2 cut(s) 1253, 1634
HpyAV CCTTC 9 cut(s) 259, 506, 702, 806, 1297, 1359, 1898, 1918, 2009
HpyCH4III ACNGT 7 cut(s) 49, 413, 443, 1470, 1498, 1772, 2016
HpyCH4IV ACGT 3 cut(s) 15, 1251, 1939
HpyF10VI GCNNNNNNNGC 4 cut(s) 707, 848, 1227, 1520
HpyF3I CTNAG 7 cut(s) 424, 1016, 1202, 1448, 1801, 1881, 1934
HpySE526I ACGT 3 cut(s) 15, 1251, 1939
Hsp92I GRCGYC 1 cut(s) 819
Hsp92II CATG 5 cut(s) 146, 368, 1267, 1720, 1914
HspAI GCGC 1 cut(s) 1367
KpnI GGTACC 2 cut(s) 53, 896
KroI GCCGGC 1 cut(s) 451
KroNI GCCGGC 1 cut(s) 453
Ksp22I TGATCA 1 cut(s) 1242
LguI GCTCTTC 1 cut(s) 969
LmnI GCTCC 3 cut(s) 202, 707, 909
Lsp1109I GCAGC 4 cut(s) 489, 1104, 1707, 1994
LweI GCATC 5 cut(s) 710, 913, 1741, 1839, 1863
MaeI CTAG 5 cut(s) 399, 1029, 1041, 1046, 1068
MaeII ACGT 3 cut(s) 15, 1251, 1939
MaeIII GTNAC 7 cut(s) 98, 317, 770, 815, 1259, 1284, 1940
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 2 cut(s) 169, 185
MluCI AATT 7 cut(s) 37, 111, 296, 1231, 1327, 1476, 1481
MlyI GAGTC 1 cut(s) 906
MmeI TCCRAC 1 cut(s) 1643
Mph1103I ATGCAT 1 cut(s) 928
MroNI GCCGGC 1 cut(s) 451
MroXI GAANNNNTTC 2 cut(s) 978, 1348
MseI TTAA 2 cut(s) 1479, 1737
MslI CAYNNNNRTG 3 cut(s) 1125, 1250, 1496
MspA1I CMGCKG 1 cut(s) 1095
MspI CCGG 3 cut(s) 53, 452, 775
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MvnI CGCG 1 cut(s) 1367
MwoI GCNNNNNNNGC 4 cut(s) 707, 848, 1227, 1520
NaeI GCCGGC 1 cut(s) 453
NcoI CCATGG 1 cut(s) 1910
NdeI CATATG 1 cut(s) 790
NgoMIV GCCGGC 1 cut(s) 451
NlaIII CATG 5 cut(s) 146, 368, 1267, 1720, 1914
NlaIV GGNNCC 3 cut(s) 51, 204, 894
NmeAIII GCCGAG 1 cut(s) 916
NmuCI GTSAC 4 cut(s) 770, 815, 1259, 1940
NsiI ATGCAT 1 cut(s) 928
NspV TTCGAA 1 cut(s) 280
OliI CACNNNNGTG 2 cut(s) 1250, 1496
PciSI GCTCTTC 1 cut(s) 969
PcsI WCGNNNNNNNCGW 3 cut(s) 168, 559, 825
PdiI GCCGGC 1 cut(s) 453
PdmI GAANNNNTTC 2 cut(s) 978, 1348
PfeI GAWTC 7 cut(s) 241, 802, 830, 1615, 1646, 1860, 1930
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 5 cut(s) 504, 1094, 1397, 1722, 1984
PleI GAGTC 1 cut(s) 906
PpsI GAGTC 1 cut(s) 906
PpuMI RGGWCCY 2 cut(s) 569, 1051
Psp124BI GAGCTC 1 cut(s) 185
Psp5II RGGWCCY 2 cut(s) 569, 1051
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 3 cut(s) 51, 204, 894
PspPI GGNCC 3 cut(s) 569, 953, 1051
PspPPI RGGWCCY 2 cut(s) 569, 1051
PstI CTGCAG 1 cut(s) 758
PstNI CAGNNNCTG 2 cut(s) 753, 1754
PsuI RGATCY 1 cut(s) 117
PvuII CAGCTG 1 cut(s) 1095
RsaI GTAC 5 cut(s) 46, 51, 326, 894, 1608
RsaNI GTAC 5 cut(s) 45, 50, 325, 893, 1607
RseI CAYNNNNRTG 3 cut(s) 1125, 1250, 1496
SacI GAGCTC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 969
SaqAI TTAA 2 cut(s) 1479, 1737
SatI GCNGC 5 cut(s) 503, 1093, 1396, 1721, 1983
Sau96I GGNCC 3 cut(s) 569, 953, 1051
ScaI AGTACT 1 cut(s) 1608
SchI GAGTC 1 cut(s) 906
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 2 cut(s) 169, 185
SfaNI GCATC 5 cut(s) 710, 913, 1741, 1839, 1863
SfcI CTRYAG 3 cut(s) 754, 1494, 1746
SfuI TTCGAA 1 cut(s) 280
SinI GGWCC 2 cut(s) 569, 1051
SmiMI CAYNNNNRTG 3 cut(s) 1125, 1250, 1496
SmlI CTYRAG 1 cut(s) 1390
SmoI CTYRAG 1 cut(s) 1390
Sse9I AATT 7 cut(s) 37, 111, 296, 1231, 1327, 1476, 1481
SsiI CCGC 5 cut(s) 28, 481, 907, 956, 1396
SspMI CTAG 5 cut(s) 399, 1029, 1041, 1046, 1068
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 2 cut(s) 1910, 1958
TaaI ACNGT 7 cut(s) 49, 413, 443, 1470, 1498, 1772, 2016
TaiI ACGT 3 cut(s) 18, 1254, 1942
TasI AATT 7 cut(s) 37, 111, 296, 1231, 1327, 1476, 1481
TatI WGTACW 1 cut(s) 1606
TauI GCSGC 1 cut(s) 1398
TfiI GAWTC 7 cut(s) 241, 802, 830, 1615, 1646, 1860, 1930
Tru1I TTAA 2 cut(s) 1479, 1737
Tru9I TTAA 2 cut(s) 1479, 1737
TscAI CASTG 4 cut(s) 763, 1503, 1543, 1777
TseFI GTSAC 4 cut(s) 770, 815, 1259, 1940
TseI GCWGC 4 cut(s) 502, 1092, 1720, 1982
Tsp45I GTSAC 4 cut(s) 770, 815, 1259, 1940
TspDTI ATGAA 9 cut(s) 101, 131, 278, 815, 825, 950, 1109, 1723, 1999
TspGWI ACGGA 2 cut(s) 1658, 2008
TspRI CASTG 4 cut(s) 763, 1503, 1543, 1777
VpaK11BI GGWCC 2 cut(s) 569, 1051
XapI RAATTY 1 cut(s) 37
XbaI TCTAGA 1 cut(s) 1045
XcmI CCANNNNNNNNNTGG 1 cut(s) 1917
XmnI GAANNNNTTC 2 cut(s) 978, 1348
XspI CTAG 5 cut(s) 399, 1029, 1041, 1046, 1068
ZrmI AGTACT 1 cut(s) 1608
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.