Rroxscaffold_5G00354530

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000131
Physical Location & Seq
Reverse (-)
33009745 .. 33011214
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354530.1

Sequence Viewer

Length: 1023 bp
ATGGAAGGAAGTGTTGAAGCTGGACCACATGACATAGAAAACCCGTACATTGTATTAGAAAATTCATTGAGAGAGGAGGTGGGTAGATTGTCCCCCATATCCAATTCGCGTTGTATATACCGGGTTCCTTATCGACTACGGCATGTATCTGAAGAGGTCTACACACCTAGGGTAATCTCTATAGGCCCACTGCATCACGGAAGGGAAGCCTTGAAAGCCATGGAAGAACACAAAAAGAGTGATGAATTAGTAAGAATCATTCTACTGGATGCCATCTTCGTCATTGAGTTCTTATATAGATACTGGTACCCTGCATTGCTAGATAAAAATGACTGCATATTTGGAAAACCAGAGTGGGTAAATGATGTATGGCCTGACTTACTAAGGCTTGAAAATCAGCTGCCATTCTTCATTCTTGAGGACTTATTCGACCCAGACATATTTCCGGGGGTGCTGGATAATGTGGAGATGGTTTATTCTTCCGAAGAGATAGACCATTTTGTTGATCTCTTAAGAAAGTTATATATAACACCTATCAGTAGAGAATCTGTACAAACGAACTTTTATACAGCACCTACCATTGAAGAGCTAAACCGGGCGGGAGTGAAATTTAAGGCAGGAATAACCAAGAATTTATTTGACATACAGTTTGATGATGGAATTCTGGAAATTCCAAAATTCATAGCACATGATGGTACAGAGTTTGTATTAAAAAATCTAGTTGCTTTTGAGCAATGCGATACTGGCAAAGGAAATTACCTATCTGATTATGTCATTCTTATGGATCAGCTTGTGGACACCTCAAAAGATGCGGAGTTGCTCGTTAAGTATAAAATCATTGTAAACATGCTAGGAGGTGGGAGTAATGAGTTGTCAGATATGATTAACCGCCTGTCAAATGGGGTTAACCACGAAAAGAAATTCTATTTTGGGGATTCAACCCAGAAGCCAGAGAGAAAGACTCAAACTCCACCTTACCTCAAAGACTTTGTGCCTAAGGAGGAGCAGATCATTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

340

Amino Acids

39.41

Weight (kDa)

4.88

Isoelectric Point (pI)

28.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 39 - 79 1.4e-12 Plant protein of unknown function
DUF247 PF03140 80 - 313 6.7e-55 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 109
AciI CCGC 3 cut(s) 599, 812, 889
AclWI GGATC 1 cut(s) 792
AcsI RAATTY 7 cut(s) 61, 608, 631, 660, 669, 677, 920
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 4 cut(s) 47, 308, 552, 697
AflII CTTAAG 1 cut(s) 511
AgsI TTSAA 5 cut(s) 17, 214, 392, 584, 939
AluBI AGCT 4 cut(s) 20, 400, 589, 790
AluI AGCT 4 cut(s) 20, 400, 589, 790
AlwI GGATC 1 cut(s) 792
AoxI GGCC 2 cut(s) 184, 371
ApeKI GCWGC 1 cut(s) 400
ApoI RAATTY 7 cut(s) 61, 608, 631, 660, 669, 677, 920
ArsI GACNNNNNNTTYG 4 cut(s) 323, 355, 632, 664
Asp718I GGTACC 1 cut(s) 306
AspA2I CCTAGG 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 23, 185
AsuC2I CCSGG 3 cut(s) 122, 447, 596
AvaII GGWCC 1 cut(s) 23
AvrII CCTAGG 1 cut(s) 167
AxyI CCTNAGG 1 cut(s) 996
BanI GGYRCC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 387
BccI CCATC 4 cut(s) 281, 463, 650, 686
BceAI ACGGC 1 cut(s) 155
BcnI CCSGG 3 cut(s) 122, 447, 596
BfaI CTAG 4 cut(s) 168, 320, 719, 851
BfmI CTRYAG 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 511
BisI GCNGC 1 cut(s) 401
BlnI CCTAGG 1 cut(s) 167
BlsI GCNGC 1 cut(s) 402
Bme1390I CCNGG 3 cut(s) 122, 447, 596
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 23, 185
BmiI GGNNCC 2 cut(s) 126, 308
BmrFI CCNGG 3 cut(s) 122, 447, 596
BmsI GCATC 3 cut(s) 202, 259, 799
BplI GAGNNNNNCTC 2 cut(s) 946, 978
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 3 cut(s) 122, 447, 596
BsaJI CCNNGG 3 cut(s) 167, 219, 446
BsaXI ACNNNNNCTCC 2 cut(s) 952, 982
Bse1I ACTGG 3 cut(s) 270, 308, 748
Bse21I CCTNAGG 1 cut(s) 996
Bse3DI GCAATG 2 cut(s) 314, 740
BseDI CCNNGG 3 cut(s) 167, 219, 446
BseGI GGATG 1 cut(s) 274
BseMI GCAATG 2 cut(s) 314, 740
BseNI ACTGG 3 cut(s) 270, 308, 748
BseRI GAGGAG 2 cut(s) 89, 1016
BseXI GCAGC 1 cut(s) 387
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 2 cut(s) 186, 373
BshNI GGYRCC 1 cut(s) 306
BsiSI CCGG 3 cut(s) 121, 446, 595
BslFI GGGAC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 2 cut(s) 186, 373
Bsp1407I TGTACA 1 cut(s) 550
Bsp143I GATC 3 cut(s) 505, 784, 1008
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 3 cut(s) 599, 812, 889
BspANI GGCC 2 cut(s) 186, 373
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 126, 308
BspPI GGATC 1 cut(s) 792
BspQI GCTCTTC 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 306
BspTI CTTAAG 1 cut(s) 511
BsrDI GCAATG 2 cut(s) 314, 740
BsrGI TGTACA 1 cut(s) 550
BsrI ACTGG 3 cut(s) 270, 308, 748
BssECI CCNNGG 3 cut(s) 167, 219, 446
BssMI GATC 3 cut(s) 505, 784, 1008
BssT1I CCWWGG 2 cut(s) 167, 219
Bst4CI ACNGT 1 cut(s) 648
Bst6I CTCTTC 3 cut(s) 147, 480, 579
BstAFI CTTAAG 1 cut(s) 511
BstAUI TGTACA 1 cut(s) 550
BstDEI CTNAG 2 cut(s) 383, 996
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 3 cut(s) 508, 787, 1011
BstMBI GATC 3 cut(s) 505, 784, 1008
BstMWI GCNNNNNNNGC 2 cut(s) 215, 744
BstNSI RCATGY 2 cut(s) 146, 850
BstSCI CCNGG 3 cut(s) 120, 445, 594
BstSFI CTRYAG 1 cut(s) 180
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 387
Bsu36I CCTNAGG 1 cut(s) 996
BsuRI GGCC 2 cut(s) 186, 373
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 23, 185
Csp6I GTAC 4 cut(s) 46, 307, 551, 696
CviAII CATG 5 cut(s) 29, 143, 220, 689, 847
CviQI GTAC 4 cut(s) 46, 307, 551, 696
DdeI CTNAG 2 cut(s) 383, 996
DpnI GATC 3 cut(s) 507, 786, 1010
DpnII GATC 3 cut(s) 505, 784, 1008
Eam1104I CTCTTC 3 cut(s) 147, 480, 579
EarI CTCTTC 3 cut(s) 147, 480, 579
Eco130I CCWWGG 2 cut(s) 167, 219
Eco47I GGWCC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 996
EcoRI GAATTC 1 cut(s) 660
EcoT14I CCWWGG 2 cut(s) 167, 219
ErhI CCWWGG 2 cut(s) 167, 219
FaeI CATG 5 cut(s) 32, 146, 223, 692, 850
FaqI GGGAC 1 cut(s) 76
FatI CATG 5 cut(s) 28, 142, 219, 688, 846
FauI CCCGC 1 cut(s) 592
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 401
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 401
FspBI CTAG 4 cut(s) 168, 320, 719, 851
GluI GCNGC 1 cut(s) 401
HaeIII GGCC 2 cut(s) 186, 373
HapII CCGG 3 cut(s) 121, 446, 595
Hin1II CATG 5 cut(s) 32, 146, 223, 692, 850
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HinfI GANTC 4 cut(s) 255, 545, 935, 961
HpaI GTTAAC 1 cut(s) 907
HpaII CCGG 3 cut(s) 121, 446, 595
Hpy166II GTNNAC 4 cut(s) 160, 796, 844, 907
Hpy188I TCNGA 4 cut(s) 151, 484, 766, 877
Hpy188III TCNNGA 2 cut(s) 416, 665
Hpy8I GTNNAC 4 cut(s) 160, 796, 844, 907
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 648
HpyCH4V TGCA 3 cut(s) 193, 314, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 744
HpyF3I CTNAG 2 cut(s) 383, 996
Hsp92II CATG 5 cut(s) 32, 146, 223, 692, 850
KpnI GGTACC 1 cut(s) 310
KspAI GTTAAC 1 cut(s) 907
Kzo9I GATC 3 cut(s) 505, 784, 1008
LguI GCTCTTC 1 cut(s) 579
LmnI GCTCC 1 cut(s) 1003
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 3 cut(s) 202, 259, 799
MaeI CTAG 4 cut(s) 168, 320, 719, 851
MalI GATC 3 cut(s) 507, 786, 1010
MboI GATC 3 cut(s) 505, 784, 1008
MboII GAAGA 7 cut(s) 164, 236, 268, 400, 471, 497, 596
MlyI GAGTC 1 cut(s) 955
MnlI CCTC 8 cut(s) 67, 70, 148, 412, 811, 848, 989, 994
MseI TTAA 6 cut(s) 512, 612, 710, 825, 885, 906
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 400
MspCI CTTAAG 1 cut(s) 511
MspI CCGG 3 cut(s) 121, 446, 595
MspR9I CCNGG 3 cut(s) 122, 447, 596
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 215, 744
NciI CCSGG 3 cut(s) 122, 447, 596
NcoI CCATGG 1 cut(s) 219
NdeII GATC 3 cut(s) 505, 784, 1008
NlaIII CATG 5 cut(s) 32, 146, 223, 692, 850
NlaIV GGNNCC 2 cut(s) 126, 308
NspI RCATGY 2 cut(s) 146, 850
PciSI GCTCTTC 1 cut(s) 579
PfeI GAWTC 3 cut(s) 255, 545, 935
PkrI GCNGC 1 cut(s) 402
PleI GAGTC 1 cut(s) 955
PpsI GAGTC 1 cut(s) 955
PspN4I GGNNCC 2 cut(s) 126, 308
PspPI GGNCC 2 cut(s) 23, 185
PvuII CAGCTG 1 cut(s) 400
RsaI GTAC 4 cut(s) 47, 308, 552, 697
RsaNI GTAC 4 cut(s) 46, 307, 551, 696
RseI CAYNNNNRTG 1 cut(s) 779
SapI GCTCTTC 1 cut(s) 579
SaqAI TTAA 6 cut(s) 512, 612, 710, 825, 885, 906
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 3 cut(s) 505, 784, 1008
Sau96I GGNCC 2 cut(s) 23, 185
SchI GAGTC 1 cut(s) 955
ScrFI CCNGG 3 cut(s) 122, 447, 596
SfaNI GCATC 3 cut(s) 202, 259, 799
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 2 cut(s) 416, 511
SmoI CTYRAG 2 cut(s) 416, 511
SsiI CCGC 3 cut(s) 599, 812, 889
SspMI CTAG 4 cut(s) 168, 320, 719, 851
StyD4I CCNGG 3 cut(s) 120, 445, 594
StyI CCWWGG 2 cut(s) 167, 219
TaaI ACNGT 1 cut(s) 648
TaqI TCGA 2 cut(s) 133, 429
TatI WGTACW 1 cut(s) 550
TfiI GAWTC 3 cut(s) 255, 545, 935
Tru1I TTAA 6 cut(s) 512, 612, 710, 825, 885, 906
Tru9I TTAA 6 cut(s) 512, 612, 710, 825, 885, 906
TscAI CASTG 1 cut(s) 195
TseI GCWGC 1 cut(s) 400
TspDTI ATGAA 4 cut(s) 54, 258, 400, 670
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 195
Vha464I CTTAAG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 7 cut(s) 61, 608, 631, 660, 669, 677, 920
XceI RCATGY 2 cut(s) 146, 850
XmaJI CCTAGG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 4 cut(s) 168, 320, 719, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.