Rw3G018340

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000131
Physical Location & Seq
Reverse (-)
20361062 .. 20362649
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018340.1

Sequence Viewer

Length: 1281 bp
ATGCGCTGTCCCAGCAATCCGAATCAAACAACAATGCGTAAACAAAATGTGAGTGATCCCATTGCAATTATAATAATGGATAAAGTTACAAACAAGCCTACATTTTGGCCCGACTGCTGTATCTATAAAGTCCCCGGGAGATTGTGCAAAGGTTACGAAGACTTCTACACACCTCGGGTGGTCTCAGTTGGACCTTATCACTACTGCAATGGAGGAAGCTCGGAAGGAATGCAAGCCTATAAATTCATATACCTGGAGGCATTTTTCAGTCGGAACAACTTGAACTTGGACCACTGTCTTGGAGTTGTAAGAGAGCTAGAAGGAAAAGCCAGGAGTTATTATGTCGAGCCAGTCAAACTAAACAGTGATGAATTTGCTCTAATGTTGCTGGTGGATGGAAGTTTTCTTTTGGAGCTAATGCTTAGGCATTACTTTGTGGAAATTGTTGATGAATGTGATCGGATATATCGCAAGCCGAGAGTGATTCAGGATGTTTATCGCGACCTCTTGTTGATTGAGAACCAAATTCCCTTCTTTATTCTCGAGGCTTTGTATAAGGAATTGGATATGAAGACTTGGCGAGCCCAGCCATCTCTTGTGACGCTTACAAATGTGTTCTTCAGGTATTTGGTGGAAGTTGACAAGTTTCCTGGTCCAGAAAAAGTGAAGCATTTCGTTGATTTTATCCGATGGTACTACTTGCCCAAGAGTGACAGGAACAGTGAAAAAGGGATTATCTTTGACGTTCCAAGTGTGACAGCAATGGACGAGGCTGGAGTTAAGTTTGAGAAAGTCACGAAATCGATCACATTGCTTGACATGGAATTCACTAATGGCTCTCTGCGAATTCCGCACTTCATAGTAAATGATTGGAGTGAGACTCTCTTCAGGAATCTCATTGCGTTTGAGCAATGTCATGATCACCAAGTAAAGTACATCTCACAGTTTATGTGCCTTATGGGGTGTATGATCAGGACTCCAAAGGATGCAGATTTACTCATCGATCGCGAAATTATATCTACCACGCTAGGGACTAGTGAAGATATTTCGACCATATTCAACAAGATTAGCAAAGGTGTGACCTTGGATAGTTCATTTTATTACTTCACTCTCCTTAAAAATCTGAATAAATATTGCAGGAGCCCATGGCACAGTTGGAAAGCAACTCTGAAGAGGGACTATTTCAACACTCCATGGAAACTGGTTTCTACAATTGCTGCATTTGTATTGCTTGTCCTCACTGTTATACAAACAGTGTGCTCCATCATATCCCTATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

426

Amino Acids

49.62

Weight (kDa)

7.49

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 41 - 413 2.6e-105 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AccII CGCG 2 cut(s) 501, 1008
AciI CCGC 1 cut(s) 851
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 5 cut(s) 242, 371, 525, 824, 846
AcuI CTGAAG 3 cut(s) 604, 871, 1190
AfaI GTAC 2 cut(s) 695, 935
AfiI CCNNNNNNNGG 1 cut(s) 1029
AgsI TTSAA 3 cut(s) 283, 1060, 1186
AhlI ACTAGT 1 cut(s) 1034
AjnI CCWGG 3 cut(s) 252, 329, 649
AluBI AGCT 3 cut(s) 219, 316, 415
AluI AGCT 3 cut(s) 219, 316, 415
Alw21I GWGCWC 1 cut(s) 1262
Alw26I GTCTC 2 cut(s) 187, 872
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 3 cut(s) 134, 174, 542
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 1217
ApoI RAATTY 5 cut(s) 242, 371, 525, 824, 846
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 4 cut(s) 108, 191, 289, 653
AsuC2I CCSGG 2 cut(s) 135, 136
AsuHPI GGTGA 1 cut(s) 914
AvaI CYCGRG 3 cut(s) 134, 174, 542
AvaII GGWCC 3 cut(s) 191, 289, 653
BaeI ACNNNNGTAYC 2 cut(s) 103, 136
BanII GRGCYC 2 cut(s) 586, 1145
BbsI GAAGAC 2 cut(s) 165, 578
Bbv12I GWGCWC 1 cut(s) 1262
BbvI GCAGC 1 cut(s) 1204
BccI CCATC 4 cut(s) 389, 598, 684, 1271
BcgI CGANNNNNNTGC 2 cut(s) 793, 827
BciT130I CCWGG 3 cut(s) 254, 331, 651
BclI TGATCA 2 cut(s) 919, 969
BcnI CCSGG 2 cut(s) 135, 136
BcoDI GTCTC 2 cut(s) 187, 872
BcuI ACTAGT 1 cut(s) 1034
BfaI CTAG 3 cut(s) 317, 1028, 1035
BisI GCNGC 1 cut(s) 1218
BlsI GCNGC 1 cut(s) 1219
Bme1390I CCNGG 5 cut(s) 135, 136, 254, 331, 651
Bme18I GGWCC 3 cut(s) 191, 289, 653
BmeT110I CYCGRG 3 cut(s) 134, 174, 542
BmgT120I GGNCC 4 cut(s) 108, 191, 289, 653
BmiI GGNNCC 1 cut(s) 1142
BmrFI CCNGG 5 cut(s) 135, 136, 254, 331, 651
BmsI GCATC 1 cut(s) 976
BoxI GACNNNNGTC 1 cut(s) 294
BpiI GAAGAC 2 cut(s) 165, 578
BplI GAGNNNNNCTC 2 cut(s) 865, 897
BpmI CTGGAG 2 cut(s) 275, 795
Bpu10I CCTNAGC 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 135, 136
Bsa29I ATCGAT 2 cut(s) 803, 1002
BsaBI GATNNNNATC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 6 cut(s) 133, 134, 173, 1083, 1145, 1193
Bsc4I CCNNNNNNNGG 1 cut(s) 1029
Bse1I ACTGG 2 cut(s) 350, 1206
Bse3DI GCAATG 6 cut(s) 60, 214, 768, 809, 897, 917
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 3 cut(s) 254, 331, 651
BseCI ATCGAT 2 cut(s) 803, 1002
BseDI CCNNGG 6 cut(s) 133, 134, 173, 1083, 1145, 1193
BseGI GGATG 3 cut(s) 400, 496, 991
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 1029
BseMI GCAATG 6 cut(s) 60, 214, 768, 809, 897, 917
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 350, 1206
BseXI GCAGC 1 cut(s) 1204
BseYI CCCAGC 2 cut(s) 11, 585
Bsh1236I CGCG 2 cut(s) 501, 1008
Bsh1285I CGRYCG 1 cut(s) 1006
BshFI GGCC 1 cut(s) 109
BshVI ATCGAT 2 cut(s) 803, 1002
BsiEI CGRYCG 1 cut(s) 1006
BsiHKAI GWGCWC 1 cut(s) 1262
BsiHKCI CYCGRG 3 cut(s) 134, 174, 542
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 3 cut(s) 116, 1045, 1190
BslI CCNNNNNNNGG 1 cut(s) 1029
BsmAI GTCTC 2 cut(s) 187, 872
BsmFI GGGAC 3 cut(s) 116, 1045, 1190
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 187
BsoBI CYCGRG 3 cut(s) 134, 174, 542
Bsp1286I GDGCHC 3 cut(s) 586, 1145, 1262
Bsp143I GATC 6 cut(s) 55, 457, 804, 919, 969, 1003
Bsp19I CCATGG 2 cut(s) 1145, 1193
Bsp68I TCGCGA 2 cut(s) 501, 1008
BspACI CCGC 1 cut(s) 851
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 197
BspDI ATCGAT 2 cut(s) 803, 1002
BspFNI CGCG 2 cut(s) 501, 1008
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 1 cut(s) 1142
BspPI GGATC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 187
BsrDI GCAATG 6 cut(s) 60, 214, 768, 809, 897, 917
BsrI ACTGG 2 cut(s) 350, 1206
BssECI CCNNGG 6 cut(s) 133, 134, 173, 1083, 1145, 1193
BssMI GATC 6 cut(s) 55, 457, 804, 919, 969, 1003
BssT1I CCWWGG 3 cut(s) 1083, 1145, 1193
Bst2UI CCWGG 3 cut(s) 254, 331, 651
Bst4CI ACNGT 7 cut(s) 296, 365, 722, 945, 1154, 1243, 1255
Bst6I CTCTTC 2 cut(s) 890, 1166
BstC8I GCNNGC 3 cut(s) 234, 473, 582
BstDEI CTNAG 2 cut(s) 184, 422
BstDSI CCRYGG 2 cut(s) 1145, 1193
BstF5I GGATG 3 cut(s) 400, 496, 991
BstFNI CGCG 2 cut(s) 501, 1008
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 6 cut(s) 58, 460, 807, 922, 972, 1006
BstMAI GTCTC 2 cut(s) 187, 872
BstMBI GATC 6 cut(s) 55, 457, 804, 919, 969, 1003
BstMCI CGRYCG 1 cut(s) 1006
BstMWI GCNNNNNNNGC 3 cut(s) 12, 586, 850
BstNI CCWGG 3 cut(s) 254, 331, 651
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 5 cut(s) 133, 134, 252, 329, 649
BstUI CGCG 2 cut(s) 501, 1008
BstV1I GCAGC 1 cut(s) 1204
BstV2I GAAGAC 2 cut(s) 165, 578
BstXI CCANNNNNNTGG 1 cut(s) 299
Bsu15I ATCGAT 2 cut(s) 803, 1002
BsuRI GGCC 1 cut(s) 109
BsuTUI ATCGAT 2 cut(s) 803, 1002
BtgI CCRYGG 2 cut(s) 1145, 1193
BtsCI GGATG 3 cut(s) 400, 496, 991
BtsIMutI CAGTG 5 cut(s) 292, 370, 727, 1239, 1260
BtuMI TCGCGA 2 cut(s) 501, 1008
Cac8I GCNNGC 3 cut(s) 234, 473, 582
CciI TCATGA 1 cut(s) 916
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 4 cut(s) 108, 191, 289, 653
Cfr9I CCCGGG 1 cut(s) 134
ClaI ATCGAT 2 cut(s) 803, 1002
CseI GACGC 1 cut(s) 610
Csp6I GTAC 2 cut(s) 694, 934
CviAII CATG 4 cut(s) 820, 917, 1146, 1194
CviQI GTAC 2 cut(s) 694, 934
DdeI CTNAG 2 cut(s) 184, 422
DpnI GATC 6 cut(s) 57, 459, 806, 921, 971, 1005
DpnII GATC 6 cut(s) 55, 457, 804, 919, 969, 1003
Eam1104I CTCTTC 2 cut(s) 890, 1166
EarI CTCTTC 2 cut(s) 890, 1166
Eco130I CCWWGG 3 cut(s) 1083, 1145, 1193
Eco24I GRGCYC 2 cut(s) 586, 1145
Eco31I GGTCTC 1 cut(s) 187
Eco47I GGWCC 3 cut(s) 191, 289, 653
Eco57I CTGAAG 3 cut(s) 604, 871, 1190
Eco88I CYCGRG 3 cut(s) 134, 174, 542
EcoRI GAATTC 2 cut(s) 824, 846
EcoRII CCWGG 3 cut(s) 252, 329, 649
EcoT14I CCWWGG 3 cut(s) 1083, 1145, 1193
EcoT38I GRGCYC 2 cut(s) 586, 1145
ErhI CCWWGG 3 cut(s) 1083, 1145, 1193
FaeI CATG 4 cut(s) 823, 920, 1149, 1197
FaqI GGGAC 3 cut(s) 116, 1045, 1190
FatI CATG 4 cut(s) 819, 916, 1145, 1193
FbaI TGATCA 2 cut(s) 919, 969
Fnu4HI GCNGC 1 cut(s) 1218
FokI GGATG 3 cut(s) 407, 503, 998
FriOI GRGCYC 2 cut(s) 586, 1145
Fsp4HI GCNGC 1 cut(s) 1218
FspBI CTAG 3 cut(s) 317, 1028, 1035
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 1218
GsaI CCCAGC 2 cut(s) 15, 589
GsuI CTGGAG 2 cut(s) 275, 795
HaeIII GGCC 1 cut(s) 109
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 610
HhaI GCGC 1 cut(s) 6
Hin1II CATG 4 cut(s) 823, 920, 1149, 1197
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HinfI GANTC 5 cut(s) 22, 484, 880, 892, 976
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 914
Hpy166II GTNNAC 2 cut(s) 41, 640
Hpy188I TCNGA 7 cut(s) 21, 223, 273, 462, 689, 1125, 1170
Hpy188III TCNNGA 9 cut(s) 488, 500, 542, 656, 796, 889, 917, 973, 1007
Hpy8I GTNNAC 2 cut(s) 41, 640
HpyAV CCTTC 3 cut(s) 218, 314, 541
HpyCH4III ACNGT 7 cut(s) 296, 365, 722, 945, 1154, 1243, 1255
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 7 cut(s) 65, 147, 207, 232, 989, 1137, 1220
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 586, 850
HpyF3I CTNAG 2 cut(s) 184, 422
HpySE526I ACGT 1 cut(s) 744
Hsp92II CATG 4 cut(s) 823, 920, 1149, 1197
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 2 cut(s) 919, 969
Kzo9I GATC 6 cut(s) 55, 457, 804, 919, 969, 1003
LmnI GCTCC 3 cut(s) 412, 1140, 1265
Lsp1109I GCAGC 1 cut(s) 1204
LweI GCATC 1 cut(s) 976
MaeI CTAG 3 cut(s) 317, 1028, 1035
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 7 cut(s) 85, 152, 598, 710, 754, 793, 1078
MalI GATC 6 cut(s) 57, 459, 806, 921, 971, 1005
MboI GATC 6 cut(s) 55, 457, 804, 919, 969, 1003
MboII GAAGA 6 cut(s) 170, 583, 610, 877, 1052, 1183
MfeI CAATTG 1 cut(s) 1212
MhlI GDGCHC 3 cut(s) 586, 1145, 1262
MlyI GAGTC 2 cut(s) 874, 970
MmeI TCCRAC 3 cut(s) 169, 251, 1136
MnlI CCTC 8 cut(s) 183, 206, 250, 515, 538, 763, 1167, 1247
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 2 cut(s) 780, 1116
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 5 cut(s) 135, 136, 254, 331, 651
MunI CAATTG 1 cut(s) 1212
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 3 cut(s) 254, 331, 651
MvnI CGCG 2 cut(s) 501, 1008
MwoI GCNNNNNNNGC 3 cut(s) 12, 586, 850
NciI CCSGG 2 cut(s) 135, 136
NcoI CCATGG 2 cut(s) 1145, 1193
NdeII GATC 6 cut(s) 55, 457, 804, 919, 969, 1003
NlaIII CATG 4 cut(s) 823, 920, 1149, 1197
NlaIV GGNNCC 1 cut(s) 1142
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 5 cut(s) 598, 710, 754, 793, 1078
NruI TCGCGA 2 cut(s) 501, 1008
PaeR7I CTCGAG 1 cut(s) 542
PagI TCATGA 1 cut(s) 916
PctI GAATGC 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 3 cut(s) 22, 484, 892
PkrI GCNGC 1 cut(s) 1219
Ple19I CGATCG 1 cut(s) 1006
PleI GAGTC 2 cut(s) 874, 970
PpsI GAGTC 2 cut(s) 874, 970
PshAI GACNNNNGTC 1 cut(s) 294
PsiI TTATAA 1 cut(s) 71
Psp6I CCWGG 3 cut(s) 252, 329, 649
PspFI CCCAGC 2 cut(s) 11, 585
PspGI CCWGG 3 cut(s) 252, 329, 649
PspN4I GGNNCC 1 cut(s) 1142
PspPI GGNCC 4 cut(s) 108, 191, 289, 653
PvuI CGATCG 1 cut(s) 1006
RruI TCGCGA 2 cut(s) 501, 1008
RsaI GTAC 2 cut(s) 695, 935
RsaNI GTAC 2 cut(s) 694, 934
SaqAI TTAA 2 cut(s) 780, 1116
SatI GCNGC 1 cut(s) 1218
Sau3AI GATC 6 cut(s) 55, 457, 804, 919, 969, 1003
Sau96I GGNCC 4 cut(s) 108, 191, 289, 653
SchI GAGTC 2 cut(s) 874, 970
ScrFI CCNGG 5 cut(s) 135, 136, 254, 331, 651
SduI GDGCHC 3 cut(s) 586, 1145, 1262
SfaNI GCATC 1 cut(s) 976
Sfr274I CTCGAG 1 cut(s) 542
SinI GGWCC 3 cut(s) 191, 289, 653
SlaI CTCGAG 1 cut(s) 542
SmaI CCCGGG 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SpeI ACTAGT 1 cut(s) 1034
SsiI CCGC 1 cut(s) 851
SspI AATATT 1 cut(s) 1133
SspMI CTAG 3 cut(s) 317, 1028, 1035
StyD4I CCNGG 5 cut(s) 133, 134, 252, 329, 649
StyI CCWWGG 3 cut(s) 1083, 1145, 1193
TaaI ACNGT 7 cut(s) 296, 365, 722, 945, 1154, 1243, 1255
TaiI ACGT 1 cut(s) 747
TaqI TCGA 5 cut(s) 345, 543, 803, 1002, 1049
TatI WGTACW 1 cut(s) 933
TfiI GAWTC 3 cut(s) 22, 484, 892
Tru1I TTAA 2 cut(s) 780, 1116
Tru9I TTAA 2 cut(s) 780, 1116
TscAI CASTG 5 cut(s) 299, 370, 727, 1246, 1260
TseFI GTSAC 5 cut(s) 598, 710, 754, 793, 1078
TseI GCWGC 1 cut(s) 1217
Tsp45I GTSAC 5 cut(s) 598, 710, 754, 793, 1078
TspDTI ATGAA 6 cut(s) 235, 384, 465, 584, 847, 1083
TspMI CCCGGG 1 cut(s) 134
TspRI CASTG 5 cut(s) 299, 370, 727, 1246, 1260
VpaK11BI GGWCC 3 cut(s) 191, 289, 653
XapI RAATTY 5 cut(s) 242, 371, 525, 824, 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 1152
XhoI CTCGAG 1 cut(s) 542
XmaI CCCGGG 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 3 cut(s) 317, 1028, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.