MD15G1101400.v1.1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000131
Physical Location & Seq
Forward (+)
7111839 .. 7112639
801 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1101400.v1.1.491

Sequence Viewer

Length: 801 bp
ATGGAAGAGCACAAACTAAGGTACCTGAAACATTTTCTAAGTAAAACCGGGGTAAGATTGTCTGATTGTATACAATGGATACAGGAGCAAGAGGAAAGGTTGCGAGGTTTTTATGCAGAACCCATTGTGTTTGACAAGGATGAATTTGTAAGAATTGTTTCAGTGGATGCCGCCTTCGTCATTGATTTATTATTGAGGTTTCATTACTCAAATTATGGAGAGGAAGGTGATTACATATTCAGAAACCCTACGATGAAAGAGGATGTGGTTCGAGATTTGAAGTTGCTTGAAAACCAGCTGCCATTCTTCATTCTTCAAGATCTTTTCACATTTTTTCCTTCTTCACCTGAGCATCCTTCGTTACTTAAAATTTCCTACTTTGTCTTCCAAAGTGAAATCGATAGCAAGGGAGAAAAAGAGAAATTTGACGAGATAGTTTCTTCTGGAGTAGAAGAGAGAAGTTCTTCTGGAGTAGAAGTAAAACATTTTGTTGATCTGATAAGAATTCTATACCTACAAAAGAAACCCGAAACTACAGACACACCCAAAACCACTTTGTGCGACCGGATGCCAGTGCGCTTATCTCACTCAATCTTTCTGACGTCTGGGTATACACCCATCACCACAGACAACCCCAACACCACAGCCACTCCCAAGTTGACAGAGCTACACCAGGCTGGAGTCAAGTTTAAGGTAGGAAAAGACAGCAGCTTAATTGACATAAAGTTTTGGGTCAACATTATTAATAATGGTTGTATATCTTCAACTAAATTAAAATGGCTCGATGAACGGGTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

267

Amino Acids

30.9

Weight (kDa)

5.72

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 250 6.8e-45 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 605
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AccI GTMKAC 2 cut(s) 70, 611
AciI CCGC 1 cut(s) 171
AcsI RAATTY 4 cut(s) 143, 369, 422, 504
AcyI GRCGYC 1 cut(s) 602
AdeI CACNNNGTG 1 cut(s) 558
AfaI GTAC 1 cut(s) 23
AgsI TTSAA 4 cut(s) 280, 290, 317, 765
AjnI CCWGG 1 cut(s) 672
AluBI AGCT 3 cut(s) 298, 667, 711
AluI AGCT 3 cut(s) 298, 667, 711
Alw21I GWGCWC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 298, 708
ApoI RAATTY 4 cut(s) 143, 369, 422, 504
AseI ATTAAT 1 cut(s) 744
Asp700I GAANNNNTTC 2 cut(s) 157, 463
Asp718I GGTACC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 579
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 3 cut(s) 239, 336, 613
BaeI ACNNNNGTAYC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 285, 720
BccI CCATC 1 cut(s) 626
BciT130I CCWGG 1 cut(s) 674
BciVI GTATCC 1 cut(s) 72
BcnI CCSGG 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 534
BfuI GTATCC 1 cut(s) 72
BglII AGATCT 1 cut(s) 319
BisI GCNGC 3 cut(s) 171, 299, 709
BlsI GCNGC 3 cut(s) 172, 300, 710
Bme1390I CCNGG 2 cut(s) 49, 674
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 2 cut(s) 49, 674
BmsI GCATC 3 cut(s) 157, 361, 558
BpiI GAAGAC 1 cut(s) 376
BpmI CTGGAG 3 cut(s) 465, 489, 699
Bpu10I CCTNAGC 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 49
Bsa29I ATCGAT 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 564
BsaXI ACNNNNNCTCC 4 cut(s) 462, 492, 634, 664
Bse1I ACTGG 1 cut(s) 572
BseBI CCWGG 1 cut(s) 674
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 5 cut(s) 145, 172, 268, 352, 573
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 572
BseXI GCAGC 2 cut(s) 285, 720
Bsh1285I CGRYCG 1 cut(s) 565
BshNI GGYRCC 1 cut(s) 21
BshVI ATCGAT 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 565
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 2 cut(s) 48, 565
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 319, 493
BspACI CCGC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 21
BsrI ACTGG 1 cut(s) 572
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 2 cut(s) 319, 493
BssNAI GTATAC 2 cut(s) 71, 612
BssNI GRCGYC 1 cut(s) 602
Bst1107I GTATAC 2 cut(s) 71, 612
Bst2UI CCWGG 1 cut(s) 674
Bst6I CTCTTC 1 cut(s) 447
BstACI GRCGYC 1 cut(s) 602
BstDEI CTNAG 3 cut(s) 17, 38, 348
BstF5I GGATG 5 cut(s) 145, 172, 268, 352, 573
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 2 cut(s) 322, 496
BstMBI GATC 2 cut(s) 319, 493
BstMCI CGRYCG 1 cut(s) 565
BstNI CCWGG 1 cut(s) 674
BstSCI CCNGG 2 cut(s) 47, 672
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 285, 720
BstV2I GAAGAC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BstZ17I GTATAC 2 cut(s) 71, 612
Bsu15I ATCGAT 1 cut(s) 399
BsuI GTATCC 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 399
BtsCI GGATG 5 cut(s) 145, 172, 268, 352, 573
BtsIMutI CAGTG 2 cut(s) 168, 579
CfoI GCGC 1 cut(s) 579
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 22
CviJI RGCY 6 cut(s) 298, 647, 667, 677, 711, 781
CviKI_1 RGCY 6 cut(s) 298, 647, 667, 677, 711, 781
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 3 cut(s) 17, 38, 348
DpnI GATC 2 cut(s) 321, 495
DpnII GATC 2 cut(s) 319, 493
DraIII CACNNNGTG 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 672
FaiI YATR 8 cut(s) 71, 114, 216, 236, 511, 612, 722, 758
FblI GTMKAC 2 cut(s) 70, 611
Fnu4HI GCNGC 3 cut(s) 171, 299, 709
FokI GGATG 5 cut(s) 152, 179, 275, 339, 580
Fsp4HI GCNGC 3 cut(s) 171, 299, 709
GlaI GCGC 1 cut(s) 578
GluI GCNGC 3 cut(s) 171, 299, 709
GsuI CTGGAG 3 cut(s) 465, 489, 699
HapII CCGG 2 cut(s) 48, 565
HhaI GCGC 1 cut(s) 579
Hin1I GRCGYC 1 cut(s) 602
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 2 cut(s) 660, 736
HindII GTYRAC 2 cut(s) 660, 736
HinfI GANTC 1 cut(s) 681
HpaII CCGG 2 cut(s) 48, 565
HphI GGTGA 3 cut(s) 239, 336, 613
Hpy166II GTNNAC 4 cut(s) 71, 612, 660, 736
Hpy188I TCNGA 4 cut(s) 64, 242, 498, 600
Hpy188III TCNNGA 4 cut(s) 272, 317, 444, 468
Hpy8I GTNNAC 4 cut(s) 71, 612, 660, 736
HpyAV CCTTC 4 cut(s) 184, 218, 348, 366
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 1 cut(s) 116
HpyF3I CTNAG 3 cut(s) 17, 38, 348
HpySE526I ACGT 1 cut(s) 602
Hsp92I GRCGYC 1 cut(s) 602
HspAI GCGC 1 cut(s) 577
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 319, 493
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 2 cut(s) 285, 720
LweI GCATC 3 cut(s) 157, 361, 558
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 1 cut(s) 360
MalI GATC 2 cut(s) 321, 495
MboI GATC 2 cut(s) 319, 493
MboII GAAGA 9 cut(s) 17, 298, 305, 333, 376, 432, 456, 464, 753
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 8 cut(s) 143, 153, 211, 369, 422, 504, 714, 770
MlyI GAGTC 1 cut(s) 690
MnlI CCTC 5 cut(s) 85, 98, 189, 214, 253
MroXI GAANNNNTTC 2 cut(s) 157, 463
MseI TTAA 6 cut(s) 366, 690, 713, 744, 773, 799
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 2 cut(s) 48, 565
MspR9I CCNGG 2 cut(s) 49, 674
MvaI CCWGG 1 cut(s) 674
NciI CCSGG 1 cut(s) 49
NdeII GATC 2 cut(s) 319, 493
NlaIV GGNNCC 1 cut(s) 23
PdmI GAANNNNTTC 2 cut(s) 157, 463
PkrI GCNGC 3 cut(s) 172, 300, 710
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
PshBI ATTAAT 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 672
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 6 cut(s) 366, 690, 713, 744, 773, 799
SatI GCNGC 3 cut(s) 171, 299, 709
Sau3AI GATC 2 cut(s) 319, 493
SchI GAGTC 1 cut(s) 690
ScrFI CCNGG 2 cut(s) 49, 674
SduI GDGCHC 1 cut(s) 12
SfaNI GCATC 3 cut(s) 157, 361, 558
SfcI CTRYAG 1 cut(s) 534
Sse9I AATT 8 cut(s) 143, 153, 211, 369, 422, 504, 714, 770
SsiI CCGC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 47, 672
TaiI ACGT 1 cut(s) 605
TaqI TCGA 3 cut(s) 271, 399, 783
TasI AATT 8 cut(s) 143, 153, 211, 369, 422, 504, 714, 770
TauI GCSGC 1 cut(s) 173
Tru1I TTAA 6 cut(s) 366, 690, 713, 744, 773, 799
Tru9I TTAA 6 cut(s) 366, 690, 713, 744, 773, 799
TscAI CASTG 2 cut(s) 168, 579
TseI GCWGC 2 cut(s) 298, 708
TspDTI ATGAA 5 cut(s) 156, 191, 269, 298, 801
TspRI CASTG 2 cut(s) 168, 579
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 4 cut(s) 143, 369, 422, 504
XmiI GTMKAC 2 cut(s) 70, 611
XmnI GAANNNNTTC 2 cut(s) 157, 463
ZraI GACGTC 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.