MD00G1144600.v1.1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000131
Physical Location & Seq
Forward (+)
31674861 .. 31675817
957 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1144600.v1.1.491

Sequence Viewer

Length: 750 bp
ATGGTCAAGAAGAAAGTGAAATATAGCAGCAGTCAAGCTCCAGATGACATAGAAAAGGCCTGCATCTCAGTAGTGAATTCGACGACAAAGCGGTTGAATGGCCTGTCACCCCTGTCCCGTCACTGTTGTATCAGCAAAGTTCCTGAGCGACTACGGTGCGTGATGAAGAAGGCCTACACACCGCAAGCAGTCTCAATAGGCCCACTCCACCATGAAAACAAAGACTTGTTATACATGGAAGAACACAAACAGAGCGATTTGCGGGATGATAATGACTGGATATTCACAAAACCATGGATGTTGCAAAATATAGCGCCTGACATGATTTTACTTGAAAATCAGCTGCCATTTTTCATTCTTGAATATCTGTTCGCCGATGTCAGTTCTAACTGGGATAATGCTGAGGAACTGCCTTCACTAGTAGAGCTTTCTTACATGTTCTTCCAGAAGACGGTGCATTTACAGGGGAATGAAGACAACGATTGGAAGAACATAATTTCTTCTAGTTTGATGAAAGGTAGTTTGGAAGTAAAACACTTTGTTGATTTGATAAGAGCTTTACATCTACCAACGCAACAACCTTTGAAGAGCTCACAAACAAAGGTTAAACACTTCTGTGATCGTATAAGAGGATTTCTATCAACTAAGAAGCCACAAACGGAGAGGCCTCTAAATACACCATGCGCTAAGAAACTACACCAGGCTGGAGTCAAGTTTCAGGTCAGAAGATCAAGCAAAAATTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

250

Amino Acids

28.72

Weight (kDa)

9.22

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 44 - 86 4e-12 Plant protein of unknown function
DUF247 PF03140 89 - 245 1.9e-24 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 91, 182, 262
AcsI RAATTY 2 cut(s) 76, 739
AfiI CCNNNNNNNGG 1 cut(s) 451
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 4 cut(s) 97, 335, 362, 586
AhlI ACTAGT 1 cut(s) 418
AjnI CCWGG 1 cut(s) 699
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AleI CACNNNNGTG 1 cut(s) 615
AluBI AGCT 5 cut(s) 38, 343, 427, 557, 591
AluI AGCT 5 cut(s) 38, 343, 427, 557, 591
Alw21I GWGCWC 1 cut(s) 593
Alw26I GTCTC 1 cut(s) 196
AoxI GGCC 5 cut(s) 57, 100, 171, 199, 665
ApeKI GCWGC 2 cut(s) 27, 343
ApoI RAATTY 2 cut(s) 76, 739
AspLEI GCGC 2 cut(s) 316, 686
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BanII GRGCYC 1 cut(s) 593
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BbsI GAAGAC 2 cut(s) 455, 480
Bbv12I GWGCWC 1 cut(s) 593
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 2 cut(s) 39, 330
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BciT130I CCWGG 1 cut(s) 701
BcoDI GTCTC 1 cut(s) 196
BcuI ACTAGT 1 cut(s) 418
BfaI CTAG 2 cut(s) 419, 504
BfoI RGCGCY 1 cut(s) 317
BisI GCNGC 2 cut(s) 28, 344
BlsI GCNGC 2 cut(s) 29, 345
Bme1390I CCNGG 1 cut(s) 701
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 701
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 400
BpiI GAAGAC 2 cut(s) 455, 480
BpmI CTGGAG 2 cut(s) 24, 726
Bpu10I CCTNAGC 2 cut(s) 144, 402
BsaBI GATNNNNATC 1 cut(s) 637
BsaJI CCNNGG 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 2 cut(s) 281, 395
Bse8I GATNNNNATC 1 cut(s) 637
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 2 cut(s) 271, 303
BseJI GATNNNNATC 1 cut(s) 637
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 3 cut(s) 81, 135, 393
BseNI ACTGG 2 cut(s) 281, 395
BseXI GCAGC 2 cut(s) 39, 330
BshFI GGCC 5 cut(s) 59, 102, 173, 201, 667
BsiHKAI GWGCWC 1 cut(s) 593
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 5 cut(s) 59, 102, 173, 201, 667
Bsp1286I GDGCHC 1 cut(s) 593
Bsp143I GATC 2 cut(s) 619, 728
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 3 cut(s) 91, 182, 262
BspANI GGCC 5 cut(s) 59, 102, 173, 201, 667
BspCNI CTCAG 3 cut(s) 80, 136, 394
BspQI GCTCTTC 1 cut(s) 581
BsrI ACTGG 2 cut(s) 281, 395
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 2 cut(s) 619, 728
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 3 cut(s) 125, 156, 454
Bst6I CTCTTC 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 61, 186
BstDEI CTNAG 5 cut(s) 67, 144, 402, 645, 687
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 271, 303
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 2 cut(s) 316, 686
BstKTI GATC 2 cut(s) 622, 731
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 2 cut(s) 619, 728
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 699
BstV1I GCAGC 2 cut(s) 39, 330
BstV2I GAAGAC 2 cut(s) 455, 480
BsuRI GGCC 5 cut(s) 59, 102, 173, 201, 667
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 2 cut(s) 271, 303
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 61, 186
CfoI GCGC 2 cut(s) 316, 686
Cfr13I GGNCC 1 cut(s) 200
CviAII CATG 6 cut(s) 212, 235, 294, 322, 436, 681
DdeI CTNAG 5 cut(s) 67, 144, 402, 645, 687
DpnI GATC 2 cut(s) 621, 730
DpnII GATC 2 cut(s) 619, 728
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
Ecl136II GAGCTC 1 cut(s) 591
Eco130I CCWWGG 1 cut(s) 293
Eco147I AGGCCT 3 cut(s) 59, 173, 667
Eco24I GRGCYC 1 cut(s) 593
Eco53kI GAGCTC 1 cut(s) 591
EcoICRI GAGCTC 1 cut(s) 591
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 593
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 6 cut(s) 215, 238, 297, 325, 439, 684
FaqI GGGAC 1 cut(s) 100
FatI CATG 6 cut(s) 211, 234, 293, 321, 435, 680
FauI CCCGC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 28, 344
FokI GGATG 2 cut(s) 278, 310
FriOI GRGCYC 1 cut(s) 593
Fsp4HI GCNGC 2 cut(s) 28, 344
FspBI CTAG 2 cut(s) 419, 504
GlaI GCGC 2 cut(s) 315, 685
GluI GCNGC 2 cut(s) 28, 344
GsuI CTGGAG 2 cut(s) 24, 726
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 5 cut(s) 59, 102, 173, 201, 667
HhaI GCGC 2 cut(s) 316, 686
Hin1II CATG 6 cut(s) 215, 238, 297, 325, 439, 684
Hin6I GCGC 2 cut(s) 314, 684
HinP1I GCGC 2 cut(s) 314, 684
HinfI GANTC 1 cut(s) 708
HphI GGTGA 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 725
Hpy188III TCNNGA 5 cut(s) 7, 41, 143, 359, 445
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 163, 423
HpyCH4III ACNGT 3 cut(s) 125, 156, 454
HpyCH4V TGCA 3 cut(s) 63, 304, 457
HpyF3I CTNAG 5 cut(s) 67, 144, 402, 645, 687
Hsp92II CATG 6 cut(s) 215, 238, 297, 325, 439, 684
HspAI GCGC 2 cut(s) 314, 684
Kzo9I GATC 2 cut(s) 619, 728
LguI GCTCTTC 1 cut(s) 581
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 2 cut(s) 39, 330
LweI GCATC 1 cut(s) 72
MaeI CTAG 2 cut(s) 419, 504
MaeIII GTNAC 2 cut(s) 105, 119
MalI GATC 2 cut(s) 621, 730
MboI GATC 2 cut(s) 619, 728
MhlI GDGCHC 1 cut(s) 593
MluCI AATT 3 cut(s) 76, 495, 739
MlyI GAGTC 1 cut(s) 717
MnlI CCTC 4 cut(s) 397, 623, 657, 678
MseI TTAA 1 cut(s) 606
MslI CAYNNNNRTG 1 cut(s) 615
MspA1I CMGCKG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 701
MvaI CCWGG 1 cut(s) 701
NcoI CCATGG 1 cut(s) 293
NdeII GATC 2 cut(s) 619, 728
NlaIII CATG 6 cut(s) 215, 238, 297, 325, 439, 684
NmuCI GTSAC 2 cut(s) 105, 119
NspI RCATGY 1 cut(s) 439
OliI CACNNNNGTG 1 cut(s) 615
PceI AGGCCT 3 cut(s) 59, 173, 667
PciI ACATGT 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 581
PkrI GCNGC 2 cut(s) 29, 345
PleI GAGTC 1 cut(s) 716
PpsI GAGTC 1 cut(s) 716
PscI ACATGT 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 593
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspPI GGNCC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 615
SacI GAGCTC 1 cut(s) 593
SapI GCTCTTC 1 cut(s) 581
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 2 cut(s) 28, 344
Sau3AI GATC 2 cut(s) 619, 728
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 717
ScrFI CCNGG 1 cut(s) 701
SduI GDGCHC 1 cut(s) 593
SetI ASST 9 cut(s) 40, 345, 429, 520, 559, 583, 593, 606, 723
SfaNI GCATC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 615
SpeI ACTAGT 1 cut(s) 418
Sse9I AATT 3 cut(s) 76, 495, 739
SseBI AGGCCT 3 cut(s) 59, 173, 667
SsiI CCGC 3 cut(s) 91, 182, 262
SspMI CTAG 2 cut(s) 419, 504
SstI GAGCTC 1 cut(s) 593
StuI AGGCCT 3 cut(s) 59, 173, 667
StyD4I CCNGG 1 cut(s) 699
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 3 cut(s) 125, 156, 454
TaqI TCGA 1 cut(s) 80
TasI AATT 3 cut(s) 76, 495, 739
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 2 cut(s) 105, 119
TseI GCWGC 2 cut(s) 27, 343
Tsp45I GTSAC 2 cut(s) 105, 119
TspDTI ATGAA 5 cut(s) 179, 228, 343, 486, 527
TspGWI ACGGA 1 cut(s) 674
TspRI CASTG 1 cut(s) 128
XapI RAATTY 2 cut(s) 76, 739
XceI RCATGY 1 cut(s) 439
XspI CTAG 2 cut(s) 419, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.