Rh6AG390500

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000131
Physical Location & Seq
Forward (+)
58869921 .. 58871021
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG390500.1

Sequence Viewer

Length: 1101 bp
ATGGAAGAGCTCAAACATAGGTATCTGAAAGCCTTTCTGCATCGTTATCAGACTGTCACTAGCTTGGAGGATTGTATAATGAAAGTTAAGGAAGAAGAGCAAACTCTGCGCAGTTGTTATGCAGAGCCAATTGAGTATGATAGTGATGAATTTGTAAGAATCATTCTAGTGGATGCCATATTCATCATTGAGGTCTTAATACGGTACGATGATGAAAGATTTCAGCCTGAAAATGATCACATATTTAAAAAACCAAGGATGTTAGAGGATGCATGGCCTGACTTGCGGATGCTTGAAAATCAGCTGCCATTCTTCATCCTTGAAAAACTTTTCTGCCCTGTTGCTAGGGAGGAGTATTCAATCATTAGTCTTTCTCACAAATTCTTCAAGACTCTAATGCATATAGAGGAAATGGAAGACACTTTGCCGAGAATAAGATCTTCTCCAGTAGGACATTTTGTCGATTTTGTTTGGAAGTTGTACCCGCTGCCACCATCACGACCAGCGTTACAAAACTCACATGGAGGGCAAGTTGAAACTCTAGCCACACTCAACATGAAAGAGCTATATCTCGCAGGAGTCAGGTTTAAGGTGGGATCAAGCAAAAATATTTTTGACATACGATTCAATGATGGGACATTGGAAATTCCAAAGATAACCATAAGTGATCAATCAGAGGTTAATCTCACAAATCTTCTGGTATTTGAACAAAGCCAATGCAAGGAGACAGAGAATTACATAAATGATTATATTGGCTTCTTAAATATTCTTGTCAACACCCCAAAGGATGTGGCTTTGTTAGTTAAGCATGACATTTTTGAGAATAAGTTAGGTGACTTTAAAAAAGGGTGTACTATGATTAAGAACCTTGGTGATAGGGTCAACATTGTGGCCTCCAAAGAGTTCTATTATGCACATCTTTGTGAACAGTTGAATAAGCACTGCAGAAGGTCATGGCACGTATGGAAGGCAAATTTGAAGCAAGATTATTTGAACACACCTTGGGCGACCATTTCTGTCATTGCAGCTGTTGTTCTCCTCATACTCACTCTCATACAGACGGTGTGCTCCGTTATCAGTGTTCGTCAAACTCATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

366

Amino Acids

42.84

Weight (kDa)

5.98

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 349 4.7e-91 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 110
AciI CCGC 2 cut(s) 286, 485
AclWI GGATC 1 cut(s) 604
AcsI RAATTY 4 cut(s) 149, 380, 645, 973
AfaI GTAC 3 cut(s) 206, 482, 853
AfiI CCNNNNNNNGG 1 cut(s) 721
AhdI GACNNNNNGTC 1 cut(s) 458
AluBI AGCT 5 cut(s) 10, 63, 304, 565, 1028
AluI AGCT 5 cut(s) 10, 63, 304, 565, 1028
Alw21I GWGCWC 2 cut(s) 12, 1070
Alw26I GTCTC 1 cut(s) 719
AlwI GGATC 1 cut(s) 604
AoxI GGCC 2 cut(s) 275, 891
ApeKI GCWGC 3 cut(s) 304, 487, 1025
ApoI RAATTY 4 cut(s) 149, 380, 645, 973
Asp700I GAANNNNTTC 1 cut(s) 219
AspLEI GCGC 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 845, 884
BaeI ACNNNNGTAYC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 12, 1070
BbvI GCAGC 3 cut(s) 291, 474, 1037
BccI CCATC 2 cut(s) 502, 626
BclI TGATCA 2 cut(s) 235, 667
BcoDI GTCTC 1 cut(s) 719
BfaI CTAG 4 cut(s) 60, 167, 345, 542
BfmI CTRYAG 1 cut(s) 943
BglII AGATCT 1 cut(s) 437
BisI GCNGC 3 cut(s) 305, 488, 1026
BlsI GCNGC 3 cut(s) 306, 489, 1027
BmeRI GACNNNNNGTC 1 cut(s) 458
BmsI GCATC 4 cut(s) 49, 163, 259, 279
BpiI GAAGAC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 429
BsaAI YACGTR 1 cut(s) 961
BsaJI CCNNGG 3 cut(s) 254, 868, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 721
Bse1I ACTGG 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 1020
BseDI CCNNGG 3 cut(s) 254, 868, 1001
BseGI GGATG 6 cut(s) 178, 264, 274, 294, 315, 793
BseLI CCNNNNNNNGG 1 cut(s) 721
BseMI GCAATG 1 cut(s) 1020
BseNI ACTGG 1 cut(s) 446
BseRI GAGGAG 2 cut(s) 365, 1028
BseXI GCAGC 3 cut(s) 291, 474, 1037
BshFI GGCC 2 cut(s) 277, 893
BsiHKAI GWGCWC 2 cut(s) 12, 1070
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 1 cut(s) 721
BsmAI GTCTC 1 cut(s) 719
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 2 cut(s) 277, 893
Bsp1286I GDGCHC 2 cut(s) 12, 1070
Bsp143I GATC 4 cut(s) 235, 437, 596, 667
BspACI CCGC 2 cut(s) 286, 485
BspANI GGCC 2 cut(s) 277, 893
BspMAI CTGCAG 1 cut(s) 947
BspPI GGATC 1 cut(s) 604
BspQI GCTCTTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 1020
BsrI ACTGG 1 cut(s) 446
BssECI CCNNGG 3 cut(s) 254, 868, 1001
BssMI GATC 4 cut(s) 235, 437, 596, 667
BssT1I CCWWGG 3 cut(s) 254, 868, 1001
Bst4CI ACNGT 4 cut(s) 55, 204, 930, 1063
Bst6I CTCTTC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 106
BstBAI YACGTR 1 cut(s) 961
BstF5I GGATG 6 cut(s) 178, 264, 274, 294, 315, 793
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 4 cut(s) 238, 440, 599, 670
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 4 cut(s) 235, 437, 596, 667
BstMWI GCNNNNNNNGC 2 cut(s) 106, 283
BstSFI CTRYAG 1 cut(s) 943
BstV1I GCAGC 3 cut(s) 291, 474, 1037
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuRI GGCC 2 cut(s) 277, 893
BtsCI GGATG 6 cut(s) 178, 264, 274, 294, 315, 793
BtsI GCAGTG 1 cut(s) 940
BtsIMutI CAGTG 2 cut(s) 940, 1084
CfoI GCGC 1 cut(s) 111
Csp6I GTAC 3 cut(s) 205, 481, 852
CspCI CAANNNNNGTGG 2 cut(s) 771, 806
CviAII CATG 5 cut(s) 273, 521, 556, 809, 954
CviQI GTAC 3 cut(s) 205, 481, 852
DpnI GATC 4 cut(s) 237, 439, 598, 669
DpnII GATC 4 cut(s) 235, 437, 596, 667
DraI TTTAAA 2 cut(s) 247, 841
DriI GACNNNNNGTC 1 cut(s) 458
Eam1104I CTCTTC 1 cut(s) 90
Eam1105I GACNNNNNGTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 3 cut(s) 254, 868, 1001
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoT14I CCWWGG 3 cut(s) 254, 868, 1001
EcoT22I ATGCAT 2 cut(s) 274, 402
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 3 cut(s) 254, 868, 1001
FaeI CATG 5 cut(s) 276, 524, 559, 812, 957
FaqI GGGAC 1 cut(s) 649
FatI CATG 5 cut(s) 272, 520, 555, 808, 953
FauI CCCGC 1 cut(s) 492
FbaI TGATCA 2 cut(s) 235, 667
Fnu4HI GCNGC 3 cut(s) 305, 488, 1026
FokI GGATG 6 cut(s) 185, 271, 281, 301, 302, 800
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 3 cut(s) 305, 488, 1026
FspBI CTAG 4 cut(s) 60, 167, 345, 542
FspI TGCGCA 1 cut(s) 110
GlaI GCGC 1 cut(s) 110
GluI GCNGC 3 cut(s) 305, 488, 1026
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 2 cut(s) 277, 893
HhaI GCGC 1 cut(s) 111
Hin1II CATG 5 cut(s) 276, 524, 559, 812, 957
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 2 cut(s) 775, 883
HindII GTYRAC 2 cut(s) 775, 883
HinfI GANTC 4 cut(s) 159, 391, 579, 624
HphI GGTGA 2 cut(s) 845, 884
Hpy166II GTNNAC 4 cut(s) 775, 852, 883, 926
Hpy188I TCNGA 3 cut(s) 27, 51, 676
Hpy188III TCNNGA 2 cut(s) 388, 498
Hpy8I GTNNAC 4 cut(s) 775, 852, 883, 926
HpyAV CCTTC 2 cut(s) 942, 961
HpyCH4III ACNGT 4 cut(s) 55, 204, 930, 1063
HpyCH4IV ACGT 1 cut(s) 960
HpyCH4V TGCA 8 cut(s) 40, 122, 272, 400, 720, 914, 945, 1025
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 283
HpySE526I ACGT 1 cut(s) 960
Hsp92II CATG 5 cut(s) 276, 524, 559, 812, 957
HspAI GCGC 1 cut(s) 109
Ksp22I TGATCA 2 cut(s) 235, 667
Kzo9I GATC 4 cut(s) 235, 437, 596, 667
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 1073
LpnPI CCDG 8 cut(s) 240, 291, 351, 459, 516, 561, 568, 683
Lsp1109I GCAGC 3 cut(s) 291, 474, 1037
LweI GCATC 4 cut(s) 49, 163, 259, 279
MaeI CTAG 4 cut(s) 60, 167, 345, 542
MaeII ACGT 1 cut(s) 960
MaeIII GTNAC 3 cut(s) 55, 507, 833
MalI GATC 4 cut(s) 237, 439, 598, 669
MboI GATC 4 cut(s) 235, 437, 596, 667
MboII GAAGA 8 cut(s) 17, 104, 107, 304, 376, 428, 432, 686
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 1 cut(s) 437
MhlI GDGCHC 2 cut(s) 12, 1070
MluCI AATT 6 cut(s) 129, 149, 380, 645, 733, 973
MlyI GAGTC 2 cut(s) 385, 588
MnlI CCTC 9 cut(s) 61, 184, 259, 343, 400, 518, 670, 904, 1049
Mph1103I ATGCAT 2 cut(s) 274, 402
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 9 cut(s) 87, 197, 246, 588, 681, 761, 804, 840, 861
MslI CAYNNNNRTG 2 cut(s) 167, 921
MspA1I CMGCKG 3 cut(s) 304, 487, 1028
MunI CAATTG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 106, 283
NdeII GATC 4 cut(s) 235, 437, 596, 667
NlaIII CATG 5 cut(s) 276, 524, 559, 812, 957
NmeAIII GCCGAG 1 cut(s) 453
NmuCI GTSAC 2 cut(s) 55, 833
NsbI TGCGCA 1 cut(s) 110
NsiI ATGCAT 2 cut(s) 274, 402
PciSI GCTCTTC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 2 cut(s) 159, 624
PkrI GCNGC 3 cut(s) 306, 489, 1027
PleI GAGTC 2 cut(s) 385, 587
PpsI GAGTC 2 cut(s) 385, 587
Ppu21I YACGTR 1 cut(s) 961
Psp124BI GAGCTC 1 cut(s) 12
PstI CTGCAG 1 cut(s) 947
PsuI RGATCY 1 cut(s) 437
PvuII CAGCTG 2 cut(s) 304, 1028
RsaI GTAC 3 cut(s) 206, 482, 853
RsaNI GTAC 3 cut(s) 205, 481, 852
RseI CAYNNNNRTG 2 cut(s) 167, 921
SacI GAGCTC 1 cut(s) 12
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 9 cut(s) 87, 197, 246, 588, 681, 761, 804, 840, 861
SatI GCNGC 3 cut(s) 305, 488, 1026
Sau3AI GATC 4 cut(s) 235, 437, 596, 667
SchI GAGTC 2 cut(s) 385, 588
SduI GDGCHC 2 cut(s) 12, 1070
SfaNI GCATC 4 cut(s) 49, 163, 259, 279
SfcI CTRYAG 1 cut(s) 943
SmiMI CAYNNNNRTG 2 cut(s) 167, 921
Sse9I AATT 6 cut(s) 129, 149, 380, 645, 733, 973
SsiI CCGC 2 cut(s) 286, 485
SspI AATATT 2 cut(s) 610, 766
SspMI CTAG 4 cut(s) 60, 167, 345, 542
SstI GAGCTC 1 cut(s) 12
StyI CCWWGG 3 cut(s) 254, 868, 1001
TaaI ACNGT 4 cut(s) 55, 204, 930, 1063
TaiI ACGT 1 cut(s) 963
TaqI TCGA 1 cut(s) 462
TasI AATT 6 cut(s) 129, 149, 380, 645, 733, 973
TatI WGTACW 1 cut(s) 851
TfiI GAWTC 2 cut(s) 159, 624
Tru1I TTAA 9 cut(s) 87, 197, 246, 588, 681, 761, 804, 840, 861
Tru9I TTAA 9 cut(s) 87, 197, 246, 588, 681, 761, 804, 840, 861
TscAI CASTG 2 cut(s) 947, 1084
TseFI GTSAC 2 cut(s) 55, 833
TseI GCWGC 3 cut(s) 304, 487, 1025
Tsp45I GTSAC 2 cut(s) 55, 833
TspDTI ATGAA 6 cut(s) 95, 162, 172, 228, 304, 572
TspGWI ACGGA 1 cut(s) 1060
TspRI CASTG 2 cut(s) 947, 1084
XapI RAATTY 4 cut(s) 149, 380, 645, 973
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 4 cut(s) 60, 167, 345, 542
Zsp2I ATGCAT 2 cut(s) 274, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.