RchiOBHm_Chr6g0298131

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000131
Physical Location & Seq
Reverse (-)
59650749 .. 59651606
858 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26760

Sequence Viewer

Length: 858 bp
ATGGTAGAGGATGTACTGACTGACTTGCTGATGCTTGAAAATCAGCTGCCATTCTTCATTCTTGAGTACCTATTCAAGAAATTCTTCATTCTTGGGGACAATCCAGCTTCTGTTAGGAGTCTTTCCATACAGTTTCTTCGTGAGCAGGGTGCTACAGCTTTCGGGATAGAGTTAGATGATTCTCCCAGAGTAGAAGCGAAACATATTGTTGATCTCTTTAGAGGGCTATTGATAGCTCCTATGTCGAAAGAACCACCCATGATCAAAACAGAAAAATCTGCAACAACACCTTGCATTGAAAAGCTACACCTGGCAGAAGTCCAATTTAAACCCGTCAAAACCACGAAATTGTTTGACATACGATTTGATGTAACCACGAAATGGTTTGGCATAGGATTCCATAAAGGGATTCTGAAGATTCCAAAATTGCACACAGGGGATACAACGGAGCTTGTACTTACAAATTTAATTGCCTTTGAACAATGCATTACTTCTGAAGATTATTGCATAAGGGATTATGTTAGCATCATGGATGAGTTGGTGGACGATTCAAAAGATGTGGGGTTGCTTGTCAAGTATAAAATTGTTGAAAATGATCTCGGTGGTGGCGATCAGGATTTGGCTACCTTGATCAACAACCTTTCAACTGGGATTGTGTATAACAAAAACTACTTCTATTATGGTCATCTTTGTGGAGAGCTGGACAAGTTCTACAGTTCGAAGTGGCACAAATGGATCGCAAATTTGAGCAGCAGTTATTTCAATACCCCTTGGACAACTATGTCTTTCGTGGCAGCAGTTGTTCTCCTCATACTCACTGCCATTCAAACTATCTGCTCAATTATCTCTCTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

285

Amino Acids

32.35

Weight (kDa)

5.42

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 272 2.2e-66 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 781
AccB7I CCANNNNNTGG 1 cut(s) 381
AclWI GGATC 1 cut(s) 743
AcsI RAATTY 3 cut(s) 80, 463, 742
AcuI CTGAAG 2 cut(s) 434, 516
AfaI GTAC 3 cut(s) 15, 68, 456
AfiI CCNNNNNNNGG 1 cut(s) 381
AflII CTTAAG 1 cut(s) 851
AgsI TTSAA 9 cut(s) 38, 76, 299, 479, 552, 590, 645, 763, 827
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 7 cut(s) 46, 107, 158, 236, 304, 451, 700
AluI AGCT 7 cut(s) 46, 107, 158, 236, 304, 451, 700
AlwI GGATC 1 cut(s) 743
AlwNI CAGNNNCTG 1 cut(s) 110
ApeKI GCWGC 3 cut(s) 46, 750, 794
ApoI RAATTY 3 cut(s) 80, 463, 742
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
Asp700I GAANNNNTTC 1 cut(s) 83
AsuII TTCGAA 1 cut(s) 719
BbvI GCAGC 3 cut(s) 33, 762, 806
BciT130I CCWGG 1 cut(s) 311
BciVI GTATCC 1 cut(s) 433
BclI TGATCA 2 cut(s) 261, 630
BfmI CTRYAG 2 cut(s) 153, 712
BfrI CTTAAG 1 cut(s) 851
BfuI GTATCC 1 cut(s) 433
BisI GCNGC 3 cut(s) 47, 751, 795
BlsI GCNGC 3 cut(s) 48, 752, 796
Bme1390I CCNGG 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 311
BmrI ACTGGG 1 cut(s) 657
BmsI GCATC 2 cut(s) 21, 534
BmuI ACTGGG 1 cut(s) 657
Bpu14I TTCGAA 1 cut(s) 719
BpuEI CTTGAG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 770
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 652
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 770
BseGI GGATG 2 cut(s) 16, 538
BseLI CCNNNNNNNGG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 652
BseRI GAGGAG 1 cut(s) 797
BseXI GCAGC 3 cut(s) 33, 762, 806
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 110
Bsp119I TTCGAA 1 cut(s) 719
Bsp143I GATC 6 cut(s) 211, 261, 595, 610, 630, 735
BspPI GGATC 1 cut(s) 743
BspT104I TTCGAA 1 cut(s) 719
BspTI CTTAAG 1 cut(s) 851
BsrI ACTGG 1 cut(s) 652
BssECI CCNNGG 1 cut(s) 770
BssMI GATC 6 cut(s) 211, 261, 595, 610, 630, 735
BssT1I CCWWGG 1 cut(s) 770
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 132, 716
BstAFI CTTAAG 1 cut(s) 851
BstBI TTCGAA 1 cut(s) 719
BstF5I GGATG 2 cut(s) 16, 538
BstKTI GATC 6 cut(s) 214, 264, 598, 613, 633, 738
BstMBI GATC 6 cut(s) 211, 261, 595, 610, 630, 735
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 2 cut(s) 153, 712
BstV1I GCAGC 3 cut(s) 33, 762, 806
BsuI GTATCC 1 cut(s) 433
BtsCI GGATG 2 cut(s) 16, 538
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 1 cut(s) 816
CaiI CAGNNNCTG 1 cut(s) 110
Csp6I GTAC 3 cut(s) 14, 67, 455
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 2 cut(s) 259, 529
CviJI RGCY 9 cut(s) 46, 107, 158, 226, 236, 304, 451, 623, 700
CviKI_1 RGCY 9 cut(s) 46, 107, 158, 226, 236, 304, 451, 623, 700
CviQI GTAC 3 cut(s) 14, 67, 455
DpnI GATC 6 cut(s) 213, 263, 597, 612, 632, 737
DpnII GATC 6 cut(s) 211, 261, 595, 610, 630, 735
DraI TTTAAA 1 cut(s) 328
DrdI GACNNNNNNGTC 1 cut(s) 781
DseDI GACNNNNNNGTC 1 cut(s) 781
Eco130I CCWWGG 1 cut(s) 770
Eco57I CTGAAG 2 cut(s) 434, 516
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 770
EcoT22I ATGCAT 1 cut(s) 488
ErhI CCWWGG 1 cut(s) 770
FaeI CATG 2 cut(s) 262, 532
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 258, 528
FbaI TGATCA 2 cut(s) 261, 630
Fnu4HI GCNGC 3 cut(s) 47, 751, 795
FokI GGATG 2 cut(s) 23, 545
Fsp4HI GCNGC 3 cut(s) 47, 751, 795
GluI GCNGC 3 cut(s) 47, 751, 795
Hin1II CATG 2 cut(s) 262, 532
HinfI GANTC 6 cut(s) 118, 179, 396, 409, 418, 548
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 2 cut(s) 414, 496
Hpy188III TCNNGA 5 cut(s) 62, 76, 140, 163, 614
Hpy8I GTNNAC 1 cut(s) 544
HpyCH4III ACNGT 2 cut(s) 132, 716
HpyCH4V TGCA 5 cut(s) 281, 294, 430, 486, 507
Hsp92II CATG 2 cut(s) 262, 532
Ksp22I TGATCA 2 cut(s) 261, 630
Kzo9I GATC 6 cut(s) 211, 261, 595, 610, 630, 735
LmnI GCTCC 2 cut(s) 241, 448
LpnPI CCDG 9 cut(s) 117, 131, 199, 296, 323, 420, 599, 633, 686
Lsp1109I GCAGC 3 cut(s) 33, 762, 806
LweI GCATC 2 cut(s) 21, 534
MaeIII GTNAC 1 cut(s) 370
MalI GATC 6 cut(s) 213, 263, 597, 612, 632, 737
MboI GATC 6 cut(s) 211, 261, 595, 610, 630, 735
MboII GAAGA 5 cut(s) 46, 76, 128, 427, 509
MluCI AATT 9 cut(s) 80, 323, 347, 425, 463, 468, 582, 742, 840
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 2 cut(s) 215, 818
Mph1103I ATGCAT 1 cut(s) 488
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 3 cut(s) 327, 467, 852
MslI CAYNNNNRTG 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 46
MspCI CTTAAG 1 cut(s) 851
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
NdeII GATC 6 cut(s) 211, 261, 595, 610, 630, 735
NlaIII CATG 2 cut(s) 262, 532
NsiI ATGCAT 1 cut(s) 488
NspV TTCGAA 1 cut(s) 719
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 5 cut(s) 179, 396, 409, 418, 548
PflMI CCANNNNNTGG 1 cut(s) 381
PkrI GCNGC 3 cut(s) 48, 752, 796
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 3 cut(s) 15, 68, 456
RsaNI GTAC 3 cut(s) 14, 67, 455
RseI CAYNNNNRTG 1 cut(s) 690
SaqAI TTAA 3 cut(s) 327, 467, 852
SatI GCNGC 3 cut(s) 47, 751, 795
Sau3AI GATC 6 cut(s) 211, 261, 595, 610, 630, 735
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 311
SfaNI GCATC 2 cut(s) 21, 534
SfcI CTRYAG 2 cut(s) 153, 712
SfuI TTCGAA 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 2 cut(s) 62, 851
SmoI CTYRAG 2 cut(s) 62, 851
Sse9I AATT 9 cut(s) 80, 323, 347, 425, 463, 468, 582, 742, 840
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 2 cut(s) 132, 716
TaqI TCGA 2 cut(s) 245, 719
TasI AATT 9 cut(s) 80, 323, 347, 425, 463, 468, 582, 742, 840
TatI WGTACW 2 cut(s) 13, 454
TfiI GAWTC 5 cut(s) 179, 396, 409, 418, 548
Tru1I TTAA 3 cut(s) 327, 467, 852
Tru9I TTAA 3 cut(s) 327, 467, 852
TscAI CASTG 1 cut(s) 823
TseI GCWGC 3 cut(s) 46, 750, 794
TspDTI ATGAA 2 cut(s) 46, 76
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 823
Van91I CCANNNNNTGG 1 cut(s) 381
Vha464I CTTAAG 1 cut(s) 851
XapI RAATTY 3 cut(s) 80, 463, 742
XmnI GAANNNNTTC 1 cut(s) 83
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.