Prupe.2G074000_v2.0.a1

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000131
Physical Location & Seq
Forward (+)
11189667 .. 11190563
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G074000.1

Sequence Viewer

Length: 480 bp
ATGACCTGTTTATTAAATGAGCTGACTCTAAATGCGAATAGCTTGTCTTCCTCGCCTAATTCCCAGTGTATCTATAAAGTTTTAGAGAGACTGCGACAAGGAGATGATAAATTCTTCACACCTTATGTAGTCTCTGTAGGCCCACTTCACCCTGGAAAAGAACACTTAAAGGCCATGACGGTTCATAAAAAGAAGTACCTACAAGATTTTCTAGAATATCTGCTGGTGGAGAATGACATCATTGAACTTGGCCTTGGTGAAGAAGAACAAGTGGCTGCTATCTTTATTAGATTTGGAAAAGAGGTTGATATAGAAAGCAATTGTTTTGTTGAGGCAATTATTTCTCTTGTCGTAGCTGGTTTTCTCACCATATTAATTGTCATACAACAATGCTCTATTATTTTTGTTAATCATCTGTGGGAGCAAATATTTTCGTCTCCAATTACAGCACGTCACGTGAAAAAGAAGATTATCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

160

Amino Acids

18.02

Weight (kDa)

5.94

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 110
AcvI CACGTG 1 cut(s) 457
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 1 cut(s) 245
AjiI CACGTC 1 cut(s) 452
AjnI CCWGG 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 3 cut(s) 22, 42, 356
AluI AGCT 3 cut(s) 22, 42, 356
Alw26I GTCTC 3 cut(s) 82, 136, 441
AoxI GGCC 3 cut(s) 139, 171, 250
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AseI ATTAAT 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 3 cut(s) 140, 269, 358
BarI GAAGNNNNNNTAC 2 cut(s) 129, 161
BbrPI CACGTG 1 cut(s) 457
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 82, 136, 441
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 457
BsaJI CCNNGG 2 cut(s) 151, 253
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 151, 253
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 262
BshFI GGCC 3 cut(s) 141, 173, 252
BsmAI GTCTC 3 cut(s) 82, 136, 441
BsmBI CGTCTC 1 cut(s) 441
BsnI GGCC 3 cut(s) 141, 173, 252
BspANI GGCC 3 cut(s) 141, 173, 252
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 151, 253
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 457
BstMAI GTCTC 3 cut(s) 82, 136, 441
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 39
BsuRI GGCC 3 cut(s) 141, 173, 252
BtrI CACGTC 1 cut(s) 452
BtsIMutI CAGTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 175
CviJI RGCY 7 cut(s) 22, 42, 141, 173, 252, 275, 356
CviKI_1 RGCY 7 cut(s) 22, 42, 141, 173, 252, 275, 356
CviQI GTAC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 253
Eco72I CACGTG 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 1 cut(s) 178
FaiI YATR 7 cut(s) 75, 126, 176, 186, 311, 371, 383
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 1 cut(s) 212
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 3 cut(s) 141, 173, 252
Hin1II CATG 1 cut(s) 178
HinfI GANTC 1 cut(s) 25
HphI GGTGA 3 cut(s) 140, 269, 358
Hpy188III TCNNGA 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 2 cut(s) 451, 456
HpySE526I ACGT 2 cut(s) 451, 456
Hsp92II CATG 1 cut(s) 178
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 6 cut(s) 19, 77, 138, 165, 209, 342
Lsp1109I GCAGC 1 cut(s) 262
MaeI CTAG 1 cut(s) 212
MaeII ACGT 2 cut(s) 451, 456
MaeIII GTNAC 1 cut(s) 452
MboII GAAGA 5 cut(s) 39, 106, 272, 275, 478
MfeI CAATTG 1 cut(s) 319
MluCI AATT 6 cut(s) 58, 110, 319, 336, 375, 441
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 3 cut(s) 61, 295, 325
MseI TTAA 5 cut(s) 14, 167, 374, 408, 478
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 319
MvaI CCWGG 1 cut(s) 153
NlaIII CATG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 452
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 1 cut(s) 19
PmaCI CACGTG 1 cut(s) 457
PmlI CACGTG 1 cut(s) 457
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 457
PshBI ATTAAT 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 151
PspCI CACGTG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 1 cut(s) 140
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 5 cut(s) 14, 167, 374, 408, 478
SatI GCNGC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 153
SetI ASST 9 cut(s) 8, 24, 44, 124, 201, 306, 358, 454, 459
SfcI CTRYAG 1 cut(s) 135
Sse9I AATT 6 cut(s) 58, 110, 319, 336, 375, 441
SspI AATATT 1 cut(s) 429
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 2 cut(s) 454, 459
TasI AATT 6 cut(s) 58, 110, 319, 336, 375, 441
Tru1I TTAA 5 cut(s) 14, 167, 374, 408, 478
Tru9I TTAA 5 cut(s) 14, 167, 374, 408, 478
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 1 cut(s) 173
TspRI CASTG 1 cut(s) 71
VspI ATTAAT 1 cut(s) 374
XapI RAATTY 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 211
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.