RchiOBHm_Chr6g0298311

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000131
Physical Location & Seq
Forward (+)
59777756 .. 59778019
264 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26778

Sequence Viewer

Length: 264 bp
ATGGAAGAAGAAAGGTGGAATCAAGCACCTTATGACATAGAAAACCCATATATCCCCCTTCTAAGTTCCATAAGAAAAAACTTGAATAGCTTGTCTCCCTTGTCCTCTGAGTGTTGTATATACAGAGTTCCCGAGCGGCTACGCCATGCAAGTGAAGATGCCTACACCCCCAAGGTGGTCTCTATCGGCCCGCTTCACCATGGCAAGAAAGGTTTGAATGGCATCGAAAAGCAGGAAAAAAAAGGTACCAACAAGATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

87

Amino Acids

9.96

Weight (kDa)

8.6

Isoelectric Point (pI)

61.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 40 - 79 7.8e-12 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccBSI CCGCTC 1 cut(s) 136
AciI CCGC 2 cut(s) 136, 191
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 2 cut(s) 85, 217
AjuI GAANNNNNNNTTGG 1 cut(s) 242
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 99, 184
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 187
Asp718I GGTACC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 131
BanI GGYRCC 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 99, 184
BfaI CTAG 1 cut(s) 262
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 247
BmsI GCATC 2 cut(s) 148, 231
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 171, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseDI CCNNGG 2 cut(s) 171, 199
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 99
BshFI GGCC 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 2 cut(s) 99, 184
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 131
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 2 cut(s) 136, 191
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 171, 199
BssT1I CCWWGG 2 cut(s) 171, 199
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 62, 108
BstDSI CCRYGG 1 cut(s) 199
BstMAI GTCTC 2 cut(s) 99, 184
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 146, 200
CviJI RGCY 3 cut(s) 90, 139, 189
CviKI_1 RGCY 3 cut(s) 90, 139, 189
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 2 cut(s) 62, 108
Eco130I CCWWGG 2 cut(s) 171, 199
Eco31I GGTCTC 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 131
EcoT14I CCWWGG 2 cut(s) 171, 199
ErhI CCWWGG 2 cut(s) 171, 199
FaeI CATG 2 cut(s) 149, 203
FaiI YATR 9 cut(s) 33, 38, 49, 51, 71, 119, 121, 147, 201
FatI CATG 2 cut(s) 145, 199
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 262
GluI GCNGC 1 cut(s) 137
HaeIII GGCC 1 cut(s) 189
Hin1II CATG 2 cut(s) 149, 203
HinfI GANTC 1 cut(s) 19
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 62, 108
Hsp92II CATG 2 cut(s) 149, 203
KpnI GGTACC 1 cut(s) 249
LpnPI CCDG 1 cut(s) 218
LweI GCATC 2 cut(s) 148, 231
MaeI CTAG 1 cut(s) 262
MbiI CCGCTC 1 cut(s) 136
MboII GAAGA 3 cut(s) 17, 20, 167
MnlI CCTC 1 cut(s) 115
MslI CAYNNNNRTG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 199
NlaIII CATG 2 cut(s) 149, 203
NlaIV GGNNCC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 188
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 150
SatI GCNGC 1 cut(s) 137
Sau96I GGNCC 1 cut(s) 188
SetI ASST 6 cut(s) 17, 31, 92, 177, 214, 247
SfaNI GCATC 2 cut(s) 148, 231
SmiMI CAYNNNNRTG 1 cut(s) 150
SsiI CCGC 2 cut(s) 136, 191
SspMI CTAG 1 cut(s) 262
StyI CCWWGG 2 cut(s) 171, 199
TaqI TCGA 1 cut(s) 225
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 19
XspI CTAG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.