FvH4_5g20260

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000131
Physical Location & Seq
Reverse (-)
11967254 .. 11968418
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20260.t1

Sequence Viewer

Length: 1074 bp
ATGCAAGCTGAAAACGACATAGAAAACATGTTCCATTCATGTGAAACATCTCCGGAGTGGGAAAGCTTGTCTCACCATTACTATGAACATTGTATCAGCAAAGTTCCTGAGCGACTCCGGAGTGTAAATGAACAAGCCTACACACCTAAGGTAGTCTCCATAGGTCCACTCCATCATGGCAAGGCAGACTTGAGAGCCATGGAAGAAGAAAAAATTAGCTGTTACTCGGAGACTATTGAGTTTAGTAGTGATGAACTTGTGAGAATCATTTTAGTGGATGCAGCATTCATCATCGAGATCCTTCTGAGGTATTATTTCCCTGAATTGCAGGATGAGAATGACTACATATTGAAAGAACCGCATTTGTTACAAGCTGTGTCTTGTGACTTGGGGTTGCTCGAAAATCAATTGCCATTCTTCATTCTTGAGGATCTTTTTGACCCAAACATAATCAATTGTGTTGGGACGGAGAGGCCTTCTATAGTAAGTCTCTCTTACCATTTCTTTAAAATTCTTATGCATATGGAAGGAACATGTCAAACGACTTTGGAGAGATTACATTGTTCTGGATCCAAAGACCATTTTGTCAATCTCTTGAGAAATGTATATCTACCACTCGAATTGCAAAGCGGAGGGAAGATCAAAACTCTACCTGGCATGACAGAGCTGCAAAAGGATGGAGTCAAGTTTAAGGTTGGATCGAGCAAAAACTTATTTGACATACAATTCCTTAATGGGGTTCTCGAAATTCCAAAGATAGTAATAGGTTCGGAAACAGAATATATAGTTAGAAACATCATTGCTTATGAACAATGTCATTGCCATATAACAGAGAATTACATGAGTAATTATGTTGTGTTCATGGATCGTTTGGTGAACACTGCTCAAGGTGTGGAGTTTCTTTTCAAGAAAGGGATTGTTGAAAATGTTGTAATTAACAAGCTTGCTGCCGATGGAGTTATTGTGGACGCAACTTTTGCGAATCACCAAGGCTCCACTCTTATTAAGAAACTTGTTGAAGGGGTTATCATGGATCCTAATAACTTTTATTTGGTAAGCTCTGTGAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

358

Amino Acids

40.69

Weight (kDa)

5.14

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 32 - 73 3.4e-13 Plant protein of unknown function
DUF247 PF03140 73 - 313 1.6e-55 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
AccIII TCCGGA 2 cut(s) 52, 117
AciI CCGC 2 cut(s) 359, 630
AclWI GGATC 8 cut(s) 292, 438, 564, 577, 706, 873, 1028, 1041
AcsI RAATTY 2 cut(s) 510, 747
AfiI CCNNNNNNNGG 1 cut(s) 736
AflIII ACRYGT 2 cut(s) 27, 533
AgsI TTSAA 4 cut(s) 352, 907, 923, 1019
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 7 cut(s) 8, 66, 219, 374, 667, 943, 1059
AluI AGCT 7 cut(s) 8, 66, 219, 374, 667, 943, 1059
Alw26I GTCTC 4 cut(s) 75, 160, 224, 494
AlwI GGATC 8 cut(s) 292, 438, 564, 577, 706, 873, 1028, 1041
Aor13HI TCCGGA 2 cut(s) 52, 117
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 3 cut(s) 281, 667, 947
ApoI RAATTY 2 cut(s) 510, 747
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 3 cut(s) 65, 886, 977
AvaII GGWCC 1 cut(s) 164
AxyI CCTNAGG 1 cut(s) 147
BamHI GGATCC 2 cut(s) 569, 1033
BbvI GCAGC 3 cut(s) 293, 654, 934
BccI CCATC 3 cut(s) 180, 671, 947
BciT130I CCWGG 1 cut(s) 654
BcoDI GTCTC 4 cut(s) 75, 160, 224, 494
BfmI CTRYAG 1 cut(s) 480
BisI GCNGC 3 cut(s) 282, 668, 948
BlsI GCNGC 3 cut(s) 283, 669, 949
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 3 cut(s) 571, 994, 1035
BmrFI CCNGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 4 cut(s) 211, 446, 616, 870
BsaJI CCNNGG 2 cut(s) 198, 988
BsaWI WCCGGW 2 cut(s) 52, 117
BsaXI ACNNNNNCTCC 4 cut(s) 948, 977, 978, 1007
Bsc4I CCNNNNNNNGG 1 cut(s) 736
Bse21I CCTNAGG 1 cut(s) 147
Bse3DI GCAATG 2 cut(s) 798, 817
BseAI TCCGGA 2 cut(s) 52, 117
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 2 cut(s) 198, 988
BseGI GGATG 3 cut(s) 283, 337, 682
BseLI CCNNNNNNNGG 1 cut(s) 736
BseMI GCAATG 2 cut(s) 798, 817
BseMII CTCAG 2 cut(s) 99, 296
BseXI GCAGC 3 cut(s) 293, 654, 934
BshFI GGCC 1 cut(s) 475
BsiSI CCGG 2 cut(s) 53, 118
BslFI GGGAC 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 736
BsmAI GTCTC 4 cut(s) 75, 160, 224, 494
BsmFI GGGAC 1 cut(s) 478
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 1 cut(s) 475
Bsp13I TCCGGA 2 cut(s) 52, 117
Bsp143I GATC 7 cut(s) 297, 430, 569, 639, 698, 865, 1033
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 2 cut(s) 359, 630
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 2 cut(s) 100, 297
BspEI TCCGGA 2 cut(s) 52, 117
BspLI GGNNCC 3 cut(s) 571, 994, 1035
BspPI GGATC 8 cut(s) 292, 438, 564, 577, 706, 873, 1028, 1041
BsrDI GCAATG 2 cut(s) 798, 817
BssECI CCNNGG 2 cut(s) 198, 988
BssMI GATC 7 cut(s) 297, 430, 569, 639, 698, 865, 1033
BssT1I CCWWGG 2 cut(s) 198, 988
Bst2UI CCWGG 1 cut(s) 654
BstAPI GCANNNNNTGC 1 cut(s) 977
BstC8I GCNNGC 2 cut(s) 6, 945
BstDEI CTNAG 3 cut(s) 108, 147, 305
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 283, 337, 682
BstKTI GATC 7 cut(s) 300, 433, 572, 642, 701, 868, 1036
BstMAI GTCTC 4 cut(s) 75, 160, 224, 494
BstMBI GATC 7 cut(s) 297, 430, 569, 639, 698, 865, 1033
BstMWI GCNNNNNNNGC 1 cut(s) 977
BstNI CCWGG 1 cut(s) 654
BstNSI RCATGY 2 cut(s) 31, 537
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 480
BstV1I GCAGC 3 cut(s) 293, 654, 934
BstX2I RGATCY 4 cut(s) 297, 430, 569, 1033
BstYI RGATCY 4 cut(s) 297, 430, 569, 1033
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 475
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 283, 337, 682
BtsI GCAGTG 1 cut(s) 879
BtsIMutI CAGTG 1 cut(s) 879
Cac8I GCNNGC 2 cut(s) 6, 945
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 977
CspCI CAANNNNNGTGG 2 cut(s) 603, 638
CviAII CATG 9 cut(s) 28, 39, 176, 199, 534, 658, 841, 862, 1030
DdeI CTNAG 3 cut(s) 108, 147, 305
DpnI GATC 7 cut(s) 299, 432, 571, 641, 700, 867, 1035
DpnII GATC 7 cut(s) 297, 430, 569, 639, 698, 865, 1033
DraI TTTAAA 1 cut(s) 508
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
Eco130I CCWWGG 2 cut(s) 198, 988
Eco147I AGGCCT 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 164
Eco81I CCTNAGG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 198, 988
EcoT22I ATGCAT 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 198, 988
FaeI CATG 9 cut(s) 31, 42, 179, 202, 537, 661, 844, 865, 1033
FalI AAGNNNNNCTT 4 cut(s) 173, 205, 478, 510
FaqI GGGAC 1 cut(s) 478
FatI CATG 9 cut(s) 27, 38, 175, 198, 533, 657, 840, 861, 1029
FauNDI CATATG 1 cut(s) 522
Fnu4HI GCNGC 3 cut(s) 282, 668, 948
FokI GGATG 3 cut(s) 290, 344, 689
Fsp4HI GCNGC 3 cut(s) 282, 668, 948
GluI GCNGC 3 cut(s) 282, 668, 948
HaeIII GGCC 1 cut(s) 475
HapII CCGG 2 cut(s) 53, 118
HgaI GACGC 1 cut(s) 977
Hin1II CATG 9 cut(s) 31, 42, 179, 202, 537, 661, 844, 865, 1033
HindIII AAGCTT 2 cut(s) 64, 941
HinfI GANTC 4 cut(s) 114, 264, 681, 982
HpaII CCGG 2 cut(s) 53, 118
HphI GGTGA 3 cut(s) 65, 886, 977
Hpy166II GTNNAC 3 cut(s) 167, 877, 967
Hpy188I TCNGA 3 cut(s) 229, 306, 772
Hpy188III TCNNGA 9 cut(s) 53, 107, 118, 295, 425, 567, 595, 743, 907
Hpy8I GTNNAC 3 cut(s) 167, 877, 967
HpyAV CCTTC 4 cut(s) 311, 486, 521, 1013
HpyCH4V TGCA 6 cut(s) 4, 281, 328, 520, 625, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 977
HpyF3I CTNAG 3 cut(s) 108, 147, 305
Hsp92II CATG 9 cut(s) 31, 42, 179, 202, 537, 661, 844, 865, 1033
Kpn2I TCCGGA 2 cut(s) 52, 117
Kzo9I GATC 7 cut(s) 297, 430, 569, 639, 698, 865, 1033
LmnI GCTCC 1 cut(s) 998
LpnPI CCDG 8 cut(s) 66, 120, 131, 314, 333, 552, 639, 666
Lsp1109I GCAGC 3 cut(s) 293, 654, 934
LweI GCATC 1 cut(s) 268
MaeIII GTNAC 3 cut(s) 221, 366, 383
MalI GATC 7 cut(s) 299, 432, 571, 641, 700, 867, 1035
MboI GATC 7 cut(s) 297, 430, 569, 639, 698, 865, 1033
MboII GAAGA 4 cut(s) 215, 218, 409, 649
MfeI CAATTG 2 cut(s) 407, 454
MflI RGATCY 4 cut(s) 297, 430, 569, 1033
MlyI GAGTC 2 cut(s) 108, 690
MmeI TCCRAC 1 cut(s) 676
MnlI CCTC 4 cut(s) 300, 421, 465, 626
Mph1103I ATGCAT 1 cut(s) 522
MroI TCCGGA 2 cut(s) 52, 117
MseI TTAA 5 cut(s) 507, 690, 732, 936, 1005
MslI CAYNNNNRTG 3 cut(s) 39, 81, 272
MspI CCGG 2 cut(s) 53, 118
MspR9I CCNGG 1 cut(s) 654
MunI CAATTG 2 cut(s) 407, 454
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 977
NcoI CCATGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 522
NdeII GATC 7 cut(s) 297, 430, 569, 639, 698, 865, 1033
NlaIII CATG 9 cut(s) 31, 42, 179, 202, 537, 661, 844, 865, 1033
NlaIV GGNNCC 3 cut(s) 571, 994, 1035
NmuCI GTSAC 1 cut(s) 383
NsiI ATGCAT 1 cut(s) 522
NspI RCATGY 2 cut(s) 31, 537
PceI AGGCCT 1 cut(s) 475
PciI ACATGT 2 cut(s) 27, 533
PctI GAATGC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 264, 982
PkrI GCNGC 3 cut(s) 283, 669, 949
PleI GAGTC 2 cut(s) 108, 689
PpsI GAGTC 2 cut(s) 108, 689
PscI ACATGT 2 cut(s) 27, 533
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 571, 994, 1035
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 4 cut(s) 297, 430, 569, 1033
RseI CAYNNNNRTG 3 cut(s) 39, 81, 272
SaqAI TTAA 5 cut(s) 507, 690, 732, 936, 1005
SatI GCNGC 3 cut(s) 282, 668, 948
Sau3AI GATC 7 cut(s) 297, 430, 569, 639, 698, 865, 1033
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 2 cut(s) 108, 690
ScrFI CCNGG 1 cut(s) 654
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 3 cut(s) 39, 81, 272
SmlI CTYRAG 4 cut(s) 190, 425, 595, 885
SmoI CTYRAG 4 cut(s) 190, 425, 595, 885
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 2 cut(s) 359, 630
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 2 cut(s) 198, 988
TaqI TCGA 5 cut(s) 294, 399, 618, 701, 744
TfiI GAWTC 2 cut(s) 264, 982
Tru1I TTAA 5 cut(s) 507, 690, 732, 936, 1005
Tru9I TTAA 5 cut(s) 507, 690, 732, 936, 1005
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 3 cut(s) 281, 667, 947
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 8 cut(s) 27, 99, 144, 267, 277, 409, 822, 850
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 1 cut(s) 886
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 2 cut(s) 510, 747
XceI RCATGY 2 cut(s) 31, 537
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.