Rh6AG020700

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000131
Physical Location & Seq
Forward (+)
2322197 .. 2326033
3837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG020700.1

Sequence Viewer

Length: 1437 bp
ATGAAGTACCCGTCCGGCAGCCAGCACAGGGACAATGCGGTGATGCTGGCGCTACCCATGGCTGCCACCGGACAGGAACGTTTGGAGGTGTTGGTGCTCTCCAATGGCCCTAGGGCTAAGAGAGAAAGAATAGGGGCTGTGCGACTCATATGTGCTAAAACTAATTTGGATATGGGAGAGCTACAGCCAAAAAATCTGAAACAAAAGTTGGAAAAAGTGTCTCCACTTTCTCCTCAGTGTTGTATCTACAGGGTTCCAAAGAGACTACGTAACCAGAATGAGAAGGCATACACACCTCAAGTGGTCTCAATAGGCCCGCTTCACCATGGTGGAAAAGACCTAGAAGCCATGGAAGATCACAAAATACGGTATGTGAAGGACTTTCTAGAACGGACCAAGGTAAGCATGGAGGAATGTTTCAATGCCTTGAAGGAGTGGGAGACAGGAATCCGTGCTTGTTATGCAGTAAAAATTGAATACGAAGAAACTGAGCTTGTGGAAATGGTTCTTGTAGATTCCATTTTCATCTTTGAGCTCCTGCTGAGGTTTCCTTACTCAGCACTGCAAAAGGAAAAGGTTGACCGTGTATTCGGAAAACCATGGATGCAAAGGGACATAACATATGACTTGTTATTGCTTGAAAATCAGATCCCATTCTTCATTCTTGAGTATCTTTATTCCTTAGCCCTTGCCCGTAATACCATTCCTCTGGAAGCTAATGGGGTGCTTTCTCTCTTTGAGCTTACCCACCGATTTTTGGGGAAGAGCATATACATATGGCCATATGCAGAAATGAAGAAGAAACTCGAGCATAAACAAATACAACATTTTGTTGATTTTGTCCTCACATGTCATCGACCTTTACCTTCTGAGCTTCCCAATGCGAAGAAACTCACGACTTTAACCATACCAAATGCAACAGAATTATACCAGTCCGGAGTCAAGTTTGTGAATGTCGATGACAAAAACATATTTGACATAAAATTTAAGAATGGGGTCCTGAAAATTCCACAATTGAGAATCCGCGGGTCAACAGAAATTTTCTTTCGGAATCTCATTGCCTACGAGCAGTGTGAGTTCCATGATCACTACTTCCACGATTATGTGTTCATCATGGACGGCCTGGTTGACAGTTCTAAGGATGTGGACTTGCTTGTTAAGGCGGGAATCCTTGACTCTAAGCTACCGGATAGTGAAGCAACAGCAAGTTTTATCAGTTCCCTTGACTCGGGGCCTATTCTGTTCAGTAAAAAATCCTATGTTACTGATCTCTGTGACGCTCTGAATGCATACTATAGAGTCCCCCAGCACAAGTGGAAGGCAAGCTTGAAACAGGACTACTTTAGTACTCCATGGGCTGGACTGTCTATTGTTGTAGCGGCTATTCTCGTTGTGCTCACTTTAATTCAAACAGTGTGCTCTATAATGTCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

478

Amino Acids

54.86

Weight (kDa)

8.2

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 82 - 466 1.2e-112 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1358
AccII CGCG 1 cut(s) 1026
AccIII TCCGGA 1 cut(s) 935
AciI CCGC 6 cut(s) 38, 317, 1024, 1026, 1163, 1379
AclI AACGTT 1 cut(s) 79
AclWI GGATC 1 cut(s) 643
AcoI YGGCCR 1 cut(s) 779
AcsI RAATTY 3 cut(s) 983, 1005, 1038
AfaI GTAC 2 cut(s) 8, 1348
AfiI CCNNNNNNNGG 4 cut(s) 28, 757, 1228, 1358
AflIII ACRYGT 1 cut(s) 848
AgsI TTSAA 6 cut(s) 421, 430, 476, 641, 1330, 1409
AjnI CCWGG 1 cut(s) 1122
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AleI CACNNNNGTG 1 cut(s) 327
AluBI AGCT 8 cut(s) 181, 493, 535, 716, 742, 874, 1183, 1326
AluI AGCT 8 cut(s) 181, 493, 535, 716, 742, 874, 1183, 1326
Alw21I GWGCWC 4 cut(s) 99, 537, 1398, 1421
Alw26I GTCTC 4 cut(s) 225, 256, 310, 434
AlwI GGATC 1 cut(s) 643
Ama87I CYCGRG 2 cut(s) 806, 1228
Aor13HI TCCGGA 1 cut(s) 935
AoxI GGCC 5 cut(s) 106, 313, 779, 1120, 1232
ApeKI GCWGC 2 cut(s) 18, 62
ApoI RAATTY 3 cut(s) 983, 1005, 1038
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
Asp700I GAANNNNTTC 1 cut(s) 504
AspA2I CCTAGG 1 cut(s) 110
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 5 cut(s) 107, 314, 393, 997, 1232
AsuHPI GGTGA 2 cut(s) 52, 314
AvaI CYCGRG 2 cut(s) 806, 1228
AvaII GGWCC 2 cut(s) 393, 997
AvrII CCTAGG 1 cut(s) 110
BalI TGGCCA 1 cut(s) 781
BanII GRGCYC 1 cut(s) 537
BarI GAAGNNNNNNTAC 2 cut(s) 755, 787
Bbv12I GWGCWC 4 cut(s) 99, 537, 1398, 1421
BbvCI CCTCAGC 1 cut(s) 542
BbvI GCAGC 2 cut(s) 30, 49
BceAI ACGGC 1 cut(s) 1135
BciT130I CCWGG 1 cut(s) 1124
BclI TGATCA 1 cut(s) 1084
BcoDI GTCTC 4 cut(s) 225, 256, 310, 434
BfaI CTAG 3 cut(s) 111, 341, 386
BfmI CTRYAG 3 cut(s) 182, 247, 1294
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 3 cut(s) 19, 63, 1380
BlnI CCTAGG 1 cut(s) 110
BlsI GCNGC 3 cut(s) 20, 64, 1381
BmcAI AGTACT 1 cut(s) 1348
Bme1390I CCNGG 1 cut(s) 1124
Bme18I GGWCC 2 cut(s) 393, 997
BmeT110I CYCGRG 2 cut(s) 806, 1228
BmgT120I GGNCC 5 cut(s) 107, 314, 393, 997, 1232
BmiI GGNNCC 3 cut(s) 255, 998, 1233
BmrFI CCNGG 1 cut(s) 1124
BmsI GCATC 2 cut(s) 33, 594
Bpu10I CCTNAGC 2 cut(s) 542, 682
BpuEI CTTGAG 2 cut(s) 282, 686
BsaAI YACGTR 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 310
BsaJI CCNNGG 8 cut(s) 57, 110, 325, 348, 396, 599, 1024, 1352
BsaWI WCCGGW 3 cut(s) 68, 935, 1186
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 757, 1228, 1358
Bse1I ACTGG 1 cut(s) 931
Bse3DI GCAATG 1 cut(s) 1056
BseAI TCCGGA 1 cut(s) 935
BseBI CCWGG 1 cut(s) 1124
BseDI CCNNGG 8 cut(s) 57, 110, 325, 348, 396, 599, 1024, 1352
BseGI GGATG 2 cut(s) 609, 1147
BseLI CCNNNNNNNGG 4 cut(s) 28, 757, 1228, 1358
BseMI GCAATG 1 cut(s) 1056
BseMII CTCAG 5 cut(s) 248, 480, 533, 570, 861
BseNI ACTGG 1 cut(s) 931
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 30, 49
BseYI CCCAGC 1 cut(s) 1305
Bsh1236I CGCG 1 cut(s) 1026
BshFI GGCC 5 cut(s) 108, 315, 781, 1122, 1234
BsiHKAI GWGCWC 4 cut(s) 99, 537, 1398, 1421
BsiHKCI CYCGRG 2 cut(s) 806, 1228
BsiSI CCGG 4 cut(s) 15, 69, 936, 1187
BslFI GGGAC 3 cut(s) 44, 626, 1286
BslI CCNNNNNNNGG 4 cut(s) 28, 757, 1228, 1358
BsmAI GTCTC 4 cut(s) 225, 256, 310, 434
BsmFI GGGAC 3 cut(s) 44, 626, 1286
BsmI GAATGC 1 cut(s) 1291
BsnI GGCC 5 cut(s) 108, 315, 781, 1122, 1234
Bso31I GGTCTC 1 cut(s) 310
BsoBI CYCGRG 2 cut(s) 806, 1228
Bsp1286I GDGCHC 4 cut(s) 99, 537, 1398, 1421
Bsp13I TCCGGA 1 cut(s) 935
Bsp143I GATC 4 cut(s) 355, 648, 1084, 1267
Bsp19I CCATGG 5 cut(s) 57, 325, 348, 599, 1352
BspACI CCGC 6 cut(s) 38, 317, 1024, 1026, 1163, 1379
BspANI GGCC 5 cut(s) 108, 315, 781, 1122, 1234
BspCNI CTCAG 5 cut(s) 247, 481, 534, 569, 862
BspEI TCCGGA 1 cut(s) 935
BspFNI CGCG 1 cut(s) 1026
BspLI GGNNCC 3 cut(s) 255, 998, 1233
BspPI GGATC 1 cut(s) 643
BspQI GCTCTTC 1 cut(s) 758
BspTNI GGTCTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 1056
BsrI ACTGG 1 cut(s) 931
BssECI CCNNGG 8 cut(s) 57, 110, 325, 348, 396, 599, 1024, 1352
BssMI GATC 4 cut(s) 355, 648, 1084, 1267
BssT1I CCWWGG 7 cut(s) 57, 110, 325, 348, 396, 599, 1352
Bst2UI CCWGG 1 cut(s) 1124
Bst4CI ACNGT 5 cut(s) 369, 584, 1133, 1365, 1414
Bst6I CTCTTC 1 cut(s) 758
BstBAI YACGTR 1 cut(s) 269
BstC8I GCNNGC 4 cut(s) 23, 48, 317, 1324
BstDEI CTNAG 9 cut(s) 117, 234, 489, 542, 556, 682, 870, 1137, 1179
BstDSI CCRYGG 6 cut(s) 57, 325, 348, 599, 1024, 1352
BstF5I GGATG 2 cut(s) 609, 1147
BstFNI CGCG 1 cut(s) 1026
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 4 cut(s) 358, 651, 1087, 1270
BstMAI GTCTC 4 cut(s) 225, 256, 310, 434
BstMBI GATC 4 cut(s) 355, 648, 1084, 1267
BstMWI GCNNNNNNNGC 2 cut(s) 461, 1286
BstNI CCWGG 1 cut(s) 1124
BstNSI RCATGY 1 cut(s) 852
BstSCI CCNGG 1 cut(s) 1122
BstSFI CTRYAG 3 cut(s) 182, 247, 1294
BstSNI TACGTA 1 cut(s) 269
BstUI CGCG 1 cut(s) 1026
BstV1I GCAGC 2 cut(s) 30, 49
BstX2I RGATCY 1 cut(s) 648
BstXI CCANNNNNNTGG 1 cut(s) 709
BstYI RGATCY 1 cut(s) 648
BsuRI GGCC 5 cut(s) 108, 315, 781, 1122, 1234
BtgI CCRYGG 6 cut(s) 57, 325, 348, 599, 1024, 1352
BtsCI GGATG 2 cut(s) 609, 1147
BtsI GCAGTG 2 cut(s) 560, 1076
BtsIMutI CAGTG 4 cut(s) 242, 560, 1076, 1419
Cac8I GCNNGC 4 cut(s) 23, 48, 317, 1324
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 5 cut(s) 107, 314, 393, 997, 1232
Cfr42I CCGCGG 1 cut(s) 1027
CseI GACGC 1 cut(s) 1286
Csp6I GTAC 2 cut(s) 7, 1347
CviAII CATG 9 cut(s) 58, 326, 349, 406, 600, 849, 1082, 1114, 1353
CviQI GTAC 2 cut(s) 7, 1347
DdeI CTNAG 9 cut(s) 117, 234, 489, 542, 556, 682, 870, 1137, 1179
DpnI GATC 4 cut(s) 357, 650, 1086, 1269
DpnII GATC 4 cut(s) 355, 648, 1084, 1267
EaeI YGGCCR 1 cut(s) 779
Eam1104I CTCTTC 1 cut(s) 758
EarI CTCTTC 1 cut(s) 758
Ecl136II GAGCTC 1 cut(s) 535
Eco105I TACGTA 1 cut(s) 269
Eco130I CCWWGG 7 cut(s) 57, 110, 325, 348, 396, 599, 1352
Eco24I GRGCYC 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 393, 997
Eco53kI GAGCTC 1 cut(s) 535
Eco88I CYCGRG 2 cut(s) 806, 1228
EcoICRI GAGCTC 1 cut(s) 535
EcoO109I RGGNCCY 2 cut(s) 997, 1232
EcoRII CCWGG 1 cut(s) 1122
EcoT14I CCWWGG 7 cut(s) 57, 110, 325, 348, 396, 599, 1352
EcoT22I ATGCAT 1 cut(s) 1291
EcoT38I GRGCYC 1 cut(s) 537
ErhI CCWWGG 7 cut(s) 57, 110, 325, 348, 396, 599, 1352
FaeI CATG 9 cut(s) 61, 329, 352, 409, 603, 852, 1085, 1117, 1356
FalI AAGNNNNNCTT 2 cut(s) 1310, 1342
FaqI GGGAC 3 cut(s) 44, 626, 1286
FatI CATG 9 cut(s) 57, 325, 348, 405, 599, 848, 1081, 1113, 1352
FauI CCCGC 3 cut(s) 324, 1019, 1156
FauNDI CATATG 4 cut(s) 149, 622, 776, 784
FbaI TGATCA 1 cut(s) 1084
Fnu4HI GCNGC 3 cut(s) 19, 63, 1380
FokI GGATG 2 cut(s) 616, 1154
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 3 cut(s) 19, 63, 1380
FspBI CTAG 3 cut(s) 111, 341, 386
GlaI GCGC 1 cut(s) 51
GluI GCNGC 3 cut(s) 19, 63, 1380
GsaI CCCAGC 1 cut(s) 1309
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 5 cut(s) 108, 315, 781, 1122, 1234
HapII CCGG 4 cut(s) 15, 69, 936, 1187
HgaI GACGC 1 cut(s) 1286
HhaI GCGC 1 cut(s) 52
Hin1II CATG 9 cut(s) 61, 329, 352, 409, 603, 852, 1085, 1117, 1356
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 3 cut(s) 580, 1032, 1129
HindII GTYRAC 3 cut(s) 580, 1032, 1129
HindIII AAGCTT 1 cut(s) 1324
HpaII CCGG 4 cut(s) 15, 69, 936, 1187
HphI GGTGA 2 cut(s) 52, 314
Hpy166II GTNNAC 4 cut(s) 580, 1032, 1129, 1147
Hpy188I TCNGA 6 cut(s) 198, 593, 648, 871, 1050, 1284
Hpy188III TCNNGA 6 cut(s) 386, 665, 710, 895, 936, 1000
Hpy8I GTNNAC 4 cut(s) 580, 1032, 1129, 1147
HpyAV CCTTC 5 cut(s) 277, 370, 424, 876, 1312
HpyCH4III ACNGT 5 cut(s) 369, 584, 1133, 1365, 1414
HpyCH4IV ACGT 2 cut(s) 79, 268
HpyCH4V TGCA 6 cut(s) 464, 565, 607, 788, 917, 1289
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 1286
HpyF3I CTNAG 9 cut(s) 117, 234, 489, 542, 556, 682, 870, 1137, 1179
HpySE526I ACGT 2 cut(s) 79, 268
Hsp92II CATG 9 cut(s) 61, 329, 352, 409, 603, 852, 1085, 1117, 1356
HspAI GCGC 1 cut(s) 50
Kpn2I TCCGGA 1 cut(s) 935
Ksp22I TGATCA 1 cut(s) 1084
KspI CCGCGG 1 cut(s) 1027
Kzo9I GATC 4 cut(s) 355, 648, 1084, 1267
LguI GCTCTTC 1 cut(s) 758
LmnI GCTCC 1 cut(s) 540
Lsp1109I GCAGC 2 cut(s) 30, 49
LweI GCATC 2 cut(s) 33, 594
MaeI CTAG 3 cut(s) 111, 341, 386
MaeII ACGT 2 cut(s) 79, 268
MaeIII GTNAC 3 cut(s) 269, 1261, 1274
MalI GATC 4 cut(s) 357, 650, 1086, 1269
MboI GATC 4 cut(s) 355, 648, 1084, 1267
MboII GAAGA 7 cut(s) 365, 494, 649, 775, 808, 811, 898
MfeI CAATTG 1 cut(s) 1013
MflI RGATCY 1 cut(s) 648
MhlI GDGCHC 4 cut(s) 99, 537, 1398, 1421
MlsI TGGCCA 1 cut(s) 781
MluCI AATT 8 cut(s) 163, 471, 923, 983, 1005, 1013, 1038, 1404
MluNI TGGCCA 1 cut(s) 781
MlyI GAGTC 5 cut(s) 138, 948, 1169, 1220, 1308
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 7 cut(s) 79, 243, 306, 403, 537, 717, 854
Mox20I TGGCCA 1 cut(s) 781
Mph1103I ATGCAT 1 cut(s) 1291
MroI TCCGGA 1 cut(s) 935
MroXI GAANNNNTTC 1 cut(s) 504
MscI TGGCCA 1 cut(s) 781
MseI TTAA 4 cut(s) 902, 987, 1158, 1403
MslI CAYNNNNRTG 2 cut(s) 327, 1101
Msp20I TGGCCA 1 cut(s) 781
MspA1I CMGCKG 1 cut(s) 1026
MspI CCGG 4 cut(s) 15, 69, 936, 1187
MspR9I CCNGG 1 cut(s) 1124
MunI CAATTG 1 cut(s) 1013
Mva1269I GAATGC 1 cut(s) 1291
MvaI CCWGG 1 cut(s) 1124
MvnI CGCG 1 cut(s) 1026
MwoI GCNNNNNNNGC 2 cut(s) 461, 1286
NcoI CCATGG 5 cut(s) 57, 325, 348, 599, 1352
NdeI CATATG 4 cut(s) 149, 622, 776, 784
NdeII GATC 4 cut(s) 355, 648, 1084, 1267
NlaIII CATG 9 cut(s) 61, 329, 352, 409, 603, 852, 1085, 1117, 1356
NlaIV GGNNCC 3 cut(s) 255, 998, 1233
NmuCI GTSAC 1 cut(s) 1274
NsiI ATGCAT 1 cut(s) 1291
NspI RCATGY 1 cut(s) 852
OliI CACNNNNGTG 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 806
PciI ACATGT 1 cut(s) 848
PciSI GCTCTTC 1 cut(s) 758
PctI GAATGC 1 cut(s) 1291
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 5 cut(s) 447, 515, 1020, 1051, 1167
PflMI CCANNNNNTGG 1 cut(s) 1358
PkrI GCNGC 3 cut(s) 20, 64, 1381
PleI GAGTC 5 cut(s) 138, 947, 1169, 1220, 1307
PpsI GAGTC 5 cut(s) 138, 947, 1169, 1220, 1307
Ppu21I YACGTR 1 cut(s) 269
PpuMI RGGWCCY 1 cut(s) 997
PscI ACATGT 1 cut(s) 848
Psp124BI GAGCTC 1 cut(s) 537
Psp1406I AACGTT 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 997
Psp6I CCWGG 1 cut(s) 1122
PspFI CCCAGC 1 cut(s) 1305
PspGI CCWGG 1 cut(s) 1122
PspN4I GGNNCC 3 cut(s) 255, 998, 1233
PspPI GGNCC 5 cut(s) 107, 314, 393, 997, 1232
PspPPI RGGWCCY 1 cut(s) 997
PspXI VCTCGAGB 1 cut(s) 806
PsuI RGATCY 1 cut(s) 648
RsaI GTAC 2 cut(s) 8, 1348
RsaNI GTAC 2 cut(s) 7, 1347
RseI CAYNNNNRTG 2 cut(s) 327, 1101
SacI GAGCTC 1 cut(s) 537
SacII CCGCGG 1 cut(s) 1027
SapI GCTCTTC 1 cut(s) 758
SaqAI TTAA 4 cut(s) 902, 987, 1158, 1403
SatI GCNGC 3 cut(s) 19, 63, 1380
Sau3AI GATC 4 cut(s) 355, 648, 1084, 1267
Sau96I GGNCC 5 cut(s) 107, 314, 393, 997, 1232
ScaI AGTACT 1 cut(s) 1348
SchI GAGTC 5 cut(s) 138, 948, 1169, 1220, 1308
ScrFI CCNGG 1 cut(s) 1124
SduI GDGCHC 4 cut(s) 99, 537, 1398, 1421
SfaNI GCATC 2 cut(s) 33, 594
SfcI CTRYAG 3 cut(s) 182, 247, 1294
Sfr274I CTCGAG 1 cut(s) 806
Sfr303I CCGCGG 1 cut(s) 1027
SgrBI CCGCGG 1 cut(s) 1027
SinI GGWCC 2 cut(s) 393, 997
SlaI CTCGAG 1 cut(s) 806
SmiMI CAYNNNNRTG 2 cut(s) 327, 1101
SmlI CTYRAG 3 cut(s) 297, 665, 806
SmoI CTYRAG 3 cut(s) 297, 665, 806
SnaBI TACGTA 1 cut(s) 269
Sse9I AATT 8 cut(s) 163, 471, 923, 983, 1005, 1013, 1038, 1404
SsiI CCGC 6 cut(s) 38, 317, 1024, 1026, 1163, 1379
SspMI CTAG 3 cut(s) 111, 341, 386
SstI GAGCTC 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 1122
StyI CCWWGG 7 cut(s) 57, 110, 325, 348, 396, 599, 1352
TaaI ACNGT 5 cut(s) 369, 584, 1133, 1365, 1414
TaiI ACGT 2 cut(s) 82, 271
TaqI TCGA 3 cut(s) 807, 856, 957
TasI AATT 8 cut(s) 163, 471, 923, 983, 1005, 1013, 1038, 1404
TatI WGTACW 1 cut(s) 1346
TauI GCSGC 1 cut(s) 1382
TfiI GAWTC 5 cut(s) 447, 515, 1020, 1051, 1167
Tru1I TTAA 4 cut(s) 902, 987, 1158, 1403
Tru9I TTAA 4 cut(s) 902, 987, 1158, 1403
TscAI CASTG 4 cut(s) 242, 567, 1076, 1419
TseFI GTSAC 1 cut(s) 1274
TseI GCWGC 2 cut(s) 18, 62
Tsp45I GTSAC 1 cut(s) 1274
TspDTI ATGAA 5 cut(s) 17, 514, 649, 809, 1099
TspGWI ACGGA 2 cut(s) 406, 440
TspRI CASTG 4 cut(s) 242, 567, 1076, 1419
Van91I CCANNNNNTGG 1 cut(s) 1358
VpaK11BI GGWCC 2 cut(s) 393, 997
XapI RAATTY 3 cut(s) 983, 1005, 1038
XbaI TCTAGA 1 cut(s) 385
XceI RCATGY 1 cut(s) 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 806
XmaJI CCTAGG 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 3 cut(s) 111, 341, 386
ZrmI AGTACT 1 cut(s) 1348
Zsp2I ATGCAT 1 cut(s) 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.