Rroxscaffold_1G00024930

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000131
Physical Location & Seq
Reverse (-)
31000567 .. 31001313
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024930.1

Sequence Viewer

Length: 615 bp
ATGGGGTTGCTTGAAAATCAACTGCCATTTTTTATTCTTGAAAAGCTTTTTGACCCAGAAAGTATCACCGGTCTCTCTCCGTCGGATAGAGAGGGGCTTTCGGTGATGAAACTCTCTTACAATTTCTTTAAACCTCTAATGCACATAGATGAGGGAACAGAAGGCAACTTGGAGGACATCATCTGTTCTTCTAAACCACAACACTTTGTTGATCTTCTAAGATGTTTCTATGTAAGAGACCACTACATGAATGAGGACTGTACCAAGCGTAAGAGAGCTGCAACAAGGAATGTTCTTGCCTTTGAGCAATGTCATCACACTCTAGCCGAGAATTACATGACTGATTATGTTGTGTTCATGGATCGTTTCATGAGCACCCAAGAAGATGTGAAGTTACTAGTTAAGAAAAGAATTGTCAAAAATATGATCGCTGCGGACGCCACAGGTACTATCAGCCCTGAGGCCTCAACTAAGGATCTGATCAAGAAACTTACTGAAGGGGTTGTTGTAGACCCAAATAGCTTCTATTTTGCTGAACTTTGCCAAAACGTCGACAAGTACTGCAGATCACACAAGGTAGTTCAGAAAACGCTTGCTGTTATTGGTTTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

204

Amino Acids

23.4

Weight (kDa)

6.08

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 87 7.9e-11 Plant protein of unknown function
DUF247 PF03140 93 - 195 3.2e-22 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 510, 552
AciI CCGC 1 cut(s) 434
AclWI GGATC 2 cut(s) 369, 483
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 438
AfaI GTAC 3 cut(s) 262, 448, 560
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 2 cut(s) 14, 41
AhlI ACTAGT 1 cut(s) 397
AluBI AGCT 3 cut(s) 46, 278, 522
AluI AGCT 3 cut(s) 46, 278, 522
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 2 cut(s) 77, 231
AlwI GGATC 2 cut(s) 369, 483
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 278, 431
AsiGI ACCGGT 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 58, 115
AxyI CCTNAGG 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 2 cut(s) 265, 418
BclI TGATCA 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 77, 231
BcuI ACTAGT 1 cut(s) 397
BfaI CTAG 2 cut(s) 323, 398
BfmI CTRYAG 1 cut(s) 562
BisI GCNGC 2 cut(s) 279, 432
BlsI GCNGC 2 cut(s) 280, 433
BmcAI AGTACT 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 438
BsaI GGTCTC 2 cut(s) 77, 231
BsaWI WCCGGW 1 cut(s) 68
Bse118I RCCGGY 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 450
BseXI GCAGC 2 cut(s) 265, 418
BshFI GGCC 1 cut(s) 464
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 77, 231
BsnI GGCC 1 cut(s) 464
Bso31I GGTCTC 2 cut(s) 77, 231
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 6 cut(s) 211, 361, 426, 475, 480, 566
BspACI CCGC 1 cut(s) 434
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 1 cut(s) 451
BspHI TCATGA 1 cut(s) 369
BspMAI CTGCAG 1 cut(s) 566
BspPI GGATC 2 cut(s) 369, 483
BspTNI GGTCTC 2 cut(s) 77, 231
BsrDI GCAATG 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 6 cut(s) 211, 361, 426, 475, 480, 566
BssNI GRCGYC 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 3 cut(s) 218, 459, 471
BstKTI GATC 6 cut(s) 214, 364, 429, 478, 483, 569
BstMAI GTCTC 2 cut(s) 77, 231
BstMBI GATC 6 cut(s) 211, 361, 426, 475, 480, 566
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 562
BstV1I GCAGC 2 cut(s) 265, 418
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 594
CciI TCATGA 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 68
CseI GACGC 1 cut(s) 446
Csp6I GTAC 3 cut(s) 261, 447, 559
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 4 cut(s) 247, 337, 358, 370
CviJI RGCY 7 cut(s) 46, 97, 278, 326, 456, 464, 522
CviKI_1 RGCY 7 cut(s) 46, 97, 278, 326, 456, 464, 522
CviQI GTAC 3 cut(s) 261, 447, 559
DdeI CTNAG 3 cut(s) 218, 459, 471
DpnI GATC 6 cut(s) 213, 363, 428, 477, 482, 568
DpnII GATC 6 cut(s) 211, 361, 426, 475, 480, 566
DraI TTTAAA 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 464
Eco31I GGTCTC 2 cut(s) 77, 231
Eco57I CTGAAG 1 cut(s) 516
Eco81I CCTNAGG 1 cut(s) 459
FaeI CATG 4 cut(s) 250, 340, 361, 373
FaiI YATR 8 cut(s) 146, 231, 248, 338, 348, 359, 371, 425
FatI CATG 4 cut(s) 246, 336, 357, 369
FbaI TGATCA 1 cut(s) 480
FblI GTMKAC 2 cut(s) 510, 552
Fnu4HI GCNGC 2 cut(s) 279, 432
Fsp4HI GCNGC 2 cut(s) 279, 432
FspBI CTAG 2 cut(s) 323, 398
GluI GCNGC 2 cut(s) 279, 432
HaeIII GGCC 1 cut(s) 464
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 446
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 4 cut(s) 250, 340, 361, 373
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HindIII AAGCTT 1 cut(s) 44
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 58, 115
Hpy166II GTNNAC 3 cut(s) 511, 553, 608
Hpy188I TCNGA 3 cut(s) 85, 480, 585
Hpy188III TCNNGA 3 cut(s) 38, 370, 484
Hpy8I GTNNAC 3 cut(s) 511, 553, 608
Hpy99I CGWCG 2 cut(s) 85, 554
HpyAV CCTTC 2 cut(s) 155, 491
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 3 cut(s) 142, 281, 564
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 3 cut(s) 218, 459, 471
HpySE526I ACGT 1 cut(s) 549
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 4 cut(s) 250, 340, 361, 373
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 6 cut(s) 211, 361, 426, 475, 480, 566
LpnPI CCDG 4 cut(s) 69, 82, 429, 471
Lsp1109I GCAGC 2 cut(s) 265, 418
MaeI CTAG 2 cut(s) 323, 398
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 1 cut(s) 393
MalI GATC 6 cut(s) 213, 363, 428, 477, 482, 568
MboI GATC 6 cut(s) 211, 361, 426, 475, 480, 566
MboII GAAGA 3 cut(s) 180, 206, 395
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 3 cut(s) 121, 331, 411
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 7 cut(s) 85, 144, 145, 166, 247, 454, 475
MseI TTAA 3 cut(s) 129, 402, 613
MslI CAYNNNNRTG 1 cut(s) 147
MspI CCGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 437
NdeII GATC 6 cut(s) 211, 361, 426, 475, 480, 566
NlaIII CATG 4 cut(s) 250, 340, 361, 373
NmeAIII GCCGAG 1 cut(s) 352
PagI TCATGA 1 cut(s) 369
PceI AGGCCT 1 cut(s) 464
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 2 cut(s) 280, 433
PstI CTGCAG 1 cut(s) 566
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 3 cut(s) 262, 448, 560
RsaNI GTAC 3 cut(s) 261, 447, 559
RseI CAYNNNNRTG 1 cut(s) 147
SalI GTCGAC 1 cut(s) 551
SaqAI TTAA 3 cut(s) 129, 402, 613
SatI GCNGC 2 cut(s) 279, 432
Sau3AI GATC 6 cut(s) 211, 361, 426, 475, 480, 566
ScaI AGTACT 1 cut(s) 560
SduI GDGCHC 1 cut(s) 377
SetI ASST 7 cut(s) 48, 136, 280, 448, 524, 552, 579
SfcI CTRYAG 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 147
SpeI ACTAGT 1 cut(s) 397
Sse9I AATT 3 cut(s) 121, 331, 411
SseBI AGGCCT 1 cut(s) 464
SsiI CCGC 1 cut(s) 434
SspMI CTAG 2 cut(s) 323, 398
StuI AGGCCT 1 cut(s) 464
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 552
TaqI TCGA 1 cut(s) 552
TasI AATT 3 cut(s) 121, 331, 411
TatI WGTACW 1 cut(s) 558
Tru1I TTAA 3 cut(s) 129, 402, 613
Tru9I TTAA 3 cut(s) 129, 402, 613
TseI GCWGC 2 cut(s) 278, 431
TspDTI ATGAA 4 cut(s) 122, 263, 346, 358
TspGWI ACGGA 1 cut(s) 69
XmiI GTMKAC 2 cut(s) 510, 552
XspI CTAG 2 cut(s) 323, 398
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.