Prupe.1G475000_v2.0.a1

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000131
Physical Location & Seq
Reverse (-)
39470760 .. 39471722
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G475000.1

Sequence Viewer

Length: 702 bp
ATGCGGAGGAAGAAAGTGGAAGAAAGCAGCAATGAAGCTTCTTTTGACATAGAAAACCAAGCAACTTCCATGGAAAATCAGTTGACAAACTTGCGTGCCCTGTCCCCTGCCTGCAATATCTACAGGGTGCCTGAGCGACTACGGAACGTAAAACAAAAGGCCTACACACCACAAGTAGTCTCAATAGGCCCACTTCACCATGGCAGCAAAAACTTAGAAGCCATGGAAGATCACAAACTCAGGTACCTAAAGGAGAGAGAAGTTGAACTCCGTCATTATTATGAAGACACTAAGAAGTTTAACATTGCCGCTTTTGTGAATATCTTTCTAGTTGATGCCGCCTTTGTCATTGAGCTATTGTTGAGGAATAAATCCGAAGAAAAATTTCAGGAAGAAAAATTGCCGGATGATAATGCTTGGATATTTAAAAAACCATGGGTGCAACAAAATATATTGCCTGACATGCTTATGCTCGAAAATCAGCTGCCATTTTTCATTCTCGAGGATCTTTACAATCTCACAGGTGCTCAGACTGGGGAGCCTTCAATAATTGAACTCTCTTACAGGTTCTTCCAACAGGCACTGCGTTTAGAAAACTTGGAGAACTCACCAGCCTTCCGACGGAGTTCCAGTAAAGTTGAGGTGCTGGTTGCGCAGCATGGATTGCCAGTGCCACCGCTGCTAGCTGCAACATTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

234

Amino Acids

27.06

Weight (kDa)

6.02

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 654
Acc65I GGTACC 1 cut(s) 243
AccB1I GGYRCC 2 cut(s) 127, 243
AciI CCGC 4 cut(s) 4, 309, 339, 677
AclWI GGATC 1 cut(s) 513
AcsI RAATTY 1 cut(s) 383
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 621
AgsI TTSAA 3 cut(s) 266, 546, 554
AluBI AGCT 4 cut(s) 38, 355, 484, 686
AluI AGCT 4 cut(s) 38, 355, 484, 686
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 513
AlwNI CAGNNNCTG 1 cut(s) 583
Ama87I CYCGRG 1 cut(s) 500
AoxI GGCC 2 cut(s) 159, 187
ApeKI GCWGC 6 cut(s) 27, 204, 484, 655, 679, 686
ApoI RAATTY 1 cut(s) 383
AseI ATTAAT 1 cut(s) 695
Asp700I GAANNNNTTC 1 cut(s) 384
Asp718I GGTACC 1 cut(s) 243
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 188, 600
AsuNHI GCTAGC 1 cut(s) 682
AvaI CYCGRG 1 cut(s) 500
BaeGI GKGCMC 1 cut(s) 100
BaeI ACNNNNGTAYC 2 cut(s) 227, 260
BanI GGYRCC 2 cut(s) 127, 243
BbsI GAAGAC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 6 cut(s) 39, 216, 471, 666, 667, 673
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 2 cut(s) 329, 683
BfmI CTRYAG 1 cut(s) 121
BisI GCNGC 8 cut(s) 28, 205, 309, 339, 485, 656, 680, 687
BlsI GCNGC 8 cut(s) 29, 206, 310, 340, 486, 657, 681, 688
BmeT110I CYCGRG 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 3 cut(s) 129, 245, 540
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 1 cut(s) 325
BmtI GCTAGC 1 cut(s) 686
BmuI ACTGGG 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 132
BsaJI CCNNGG 4 cut(s) 69, 199, 222, 434
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse1I ACTGG 3 cut(s) 538, 630, 668
Bse3DI GCAATG 2 cut(s) 37, 303
BseDI CCNNGG 4 cut(s) 69, 199, 222, 434
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMI GCAATG 2 cut(s) 37, 303
BseMII CTCAG 3 cut(s) 123, 253, 542
BseNI ACTGG 3 cut(s) 538, 630, 668
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 6 cut(s) 39, 216, 471, 666, 667, 673
BshFI GGCC 2 cut(s) 161, 189
BshNI GGYRCC 2 cut(s) 127, 243
BsiHKAI GWGCWC 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 621
BsmAI GTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 2 cut(s) 161, 189
BsoBI CYCGRG 1 cut(s) 500
Bsp1286I GDGCHC 2 cut(s) 100, 529
Bsp143I GATC 2 cut(s) 229, 505
Bsp19I CCATGG 4 cut(s) 69, 199, 222, 434
BspACI CCGC 4 cut(s) 4, 309, 339, 677
BspANI GGCC 2 cut(s) 161, 189
BspCNI CTCAG 3 cut(s) 124, 252, 541
BspLI GGNNCC 3 cut(s) 129, 245, 540
BspOI GCTAGC 1 cut(s) 686
BspPI GGATC 1 cut(s) 513
BspT107I GGYRCC 2 cut(s) 127, 243
BsrDI GCAATG 2 cut(s) 37, 303
BsrI ACTGG 3 cut(s) 538, 630, 668
BssECI CCNNGG 4 cut(s) 69, 199, 222, 434
BssMI GATC 2 cut(s) 229, 505
BssT1I CCWWGG 4 cut(s) 69, 199, 222, 434
BstAPI GCANNNNNTGC 1 cut(s) 664
BstC8I GCNNGC 3 cut(s) 96, 112, 684
BstDEI CTNAG 5 cut(s) 132, 214, 239, 291, 528
BstDSI CCRYGG 4 cut(s) 69, 199, 222, 434
BstF5I GGATG 1 cut(s) 412
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 2 cut(s) 232, 508
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 2 cut(s) 229, 505
BstMWI GCNNNNNNNGC 4 cut(s) 463, 652, 664, 679
BstNSI RCATGY 1 cut(s) 466
BstSFI CTRYAG 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 6 cut(s) 39, 216, 471, 666, 667, 673
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BsuRI GGCC 2 cut(s) 161, 189
BtgI CCRYGG 4 cut(s) 69, 199, 222, 434
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 2 cut(s) 581, 675
Cac8I GCNNGC 3 cut(s) 96, 112, 684
CaiI CAGNNNCTG 1 cut(s) 583
CfoI GCGC 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 244
CviAII CATG 6 cut(s) 70, 200, 223, 435, 463, 659
CviJI RGCY 9 cut(s) 38, 161, 189, 221, 355, 484, 541, 614, 686
CviKI_1 RGCY 9 cut(s) 38, 161, 189, 221, 355, 484, 541, 614, 686
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 5 cut(s) 132, 214, 239, 291, 528
DpnI GATC 2 cut(s) 231, 507
DpnII GATC 2 cut(s) 229, 505
DraI TTTAAA 1 cut(s) 427
Eco130I CCWWGG 4 cut(s) 69, 199, 222, 434
Eco147I AGGCCT 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 500
EcoT14I CCWWGG 4 cut(s) 69, 199, 222, 434
ErhI CCWWGG 4 cut(s) 69, 199, 222, 434
FaeI CATG 6 cut(s) 73, 203, 226, 438, 466, 662
FaqI GGGAC 1 cut(s) 88
FatI CATG 6 cut(s) 69, 199, 222, 434, 462, 658
Fnu4HI GCNGC 8 cut(s) 28, 205, 309, 339, 485, 656, 680, 687
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 8 cut(s) 28, 205, 309, 339, 485, 656, 680, 687
FspBI CTAG 2 cut(s) 329, 683
FspI TGCGCA 1 cut(s) 654
GlaI GCGC 1 cut(s) 654
GluI GCNGC 8 cut(s) 28, 205, 309, 339, 485, 656, 680, 687
HaeIII GGCC 2 cut(s) 161, 189
HapII CCGG 1 cut(s) 404
HhaI GCGC 1 cut(s) 655
Hin1II CATG 6 cut(s) 73, 203, 226, 438, 466, 662
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 36
HpaII CCGG 1 cut(s) 404
HphI GGTGA 2 cut(s) 188, 600
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 3 cut(s) 376, 531, 620
Hpy188III TCNNGA 2 cut(s) 389, 500
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 1 cut(s) 624
HpyAV CCTTC 2 cut(s) 552, 625
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 114, 442, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 463, 652, 664, 679
HpyF3I CTNAG 5 cut(s) 132, 214, 239, 291, 528
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 6 cut(s) 73, 203, 226, 438, 466, 662
HspAI GCGC 1 cut(s) 653
KpnI GGTACC 1 cut(s) 247
Kzo9I GATC 2 cut(s) 229, 505
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 6 cut(s) 39, 216, 471, 666, 667, 673
LweI GCATC 1 cut(s) 325
MaeI CTAG 2 cut(s) 329, 683
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 231, 507
MboI GATC 2 cut(s) 229, 505
MboII GAAGA 7 cut(s) 22, 32, 239, 296, 389, 404, 562
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 2 cut(s) 100, 529
MluCI AATT 4 cut(s) 383, 398, 549, 696
MmeI TCCRAC 2 cut(s) 598, 643
MnlI CCTC 3 cut(s) 357, 496, 634
MroXI GAANNNNTTC 1 cut(s) 384
MseI TTAA 3 cut(s) 300, 426, 695
MslI CAYNNNNRTG 2 cut(s) 279, 467
MspA1I CMGCKG 2 cut(s) 484, 679
MspI CCGG 1 cut(s) 404
MwoI GCNNNNNNNGC 4 cut(s) 463, 652, 664, 679
NcoI CCATGG 4 cut(s) 69, 199, 222, 434
NdeII GATC 2 cut(s) 229, 505
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 6 cut(s) 73, 203, 226, 438, 466, 662
NlaIV GGNNCC 3 cut(s) 129, 245, 540
NsbI TGCGCA 1 cut(s) 654
NspI RCATGY 1 cut(s) 466
PaeR7I CTCGAG 1 cut(s) 500
PceI AGGCCT 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 384
PkrI GCNGC 8 cut(s) 29, 206, 310, 340, 486, 657, 681, 688
PshBI ATTAAT 1 cut(s) 695
PspN4I GGNNCC 3 cut(s) 129, 245, 540
PspPI GGNCC 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 583
PsuI RGATCY 1 cut(s) 505
PvuII CAGCTG 1 cut(s) 484
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 2 cut(s) 279, 467
SaqAI TTAA 3 cut(s) 300, 426, 695
SatI GCNGC 8 cut(s) 28, 205, 309, 339, 485, 656, 680, 687
Sau3AI GATC 2 cut(s) 229, 505
Sau96I GGNCC 1 cut(s) 188
SduI GDGCHC 2 cut(s) 100, 529
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 121
Sfr274I CTCGAG 1 cut(s) 500
SlaI CTCGAG 1 cut(s) 500
SmiMI CAYNNNNRTG 2 cut(s) 279, 467
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 4 cut(s) 383, 398, 549, 696
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 4 cut(s) 4, 309, 339, 677
SspMI CTAG 2 cut(s) 329, 683
StuI AGGCCT 1 cut(s) 161
StyI CCWWGG 4 cut(s) 69, 199, 222, 434
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 474, 501
TasI AATT 4 cut(s) 383, 398, 549, 696
TauI GCSGC 2 cut(s) 311, 341
Tru1I TTAA 3 cut(s) 300, 426, 695
Tru9I TTAA 3 cut(s) 300, 426, 695
TscAI CASTG 2 cut(s) 588, 675
TseI GCWGC 6 cut(s) 27, 204, 484, 655, 679, 686
TspDTI ATGAA 3 cut(s) 48, 297, 484
TspGWI ACGGA 3 cut(s) 157, 260, 637
TspRI CASTG 2 cut(s) 588, 675
VspI ATTAAT 1 cut(s) 695
XapI RAATTY 1 cut(s) 383
XceI RCATGY 1 cut(s) 466
XhoI CTCGAG 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 2 cut(s) 329, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.