Rw0G004890

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00187
OG0000131
Physical Location & Seq
Forward (+)
11568 .. 12401
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004890.1

Sequence Viewer

Length: 834 bp
ATGGAAGGAAGTGTTGTAGCTGCTCCAACTGACATAGAAAATCCGTACGATCGATTAGAAACTTTGATAAAGGAGGAGTTGGATAGCTTGTCTCCCCTGTCCTCTTCGCGTTGCATCTACCGGGTCCCTGATCGACTCCGACGTGTAAAGGGAGAGGACTACACACCTCGTGTAATCTCAATAGGCCCATTTCATCATGGAAAAAAAAAATTGAAAGCCATGGAAGTTCACAAAAGGTCGTACCTTAAACGTGTCATGGAGCGAACCAATTTTGAGCTGAATGATTACATAAAAAAAATAAAAGAAAAAGAAAACGAATTGCGGAATTGTTATGCAGAGACCTTTGAGCATGAAAGTGATGAATTTGTCAAAATCATTTTAGTGGATGCCATCTTCGTCATTGAGCTGATCTTAGTACTTACGCACTCTAATGATGTACCGCCACATGATGACTGCATCTTTGGAAAACCAAAGATGATAACGGATGTAGTGCTTGACTTACTGATGCTTGAAAATCAGCTGCCATTCTTCATTCTTAAGGAACTTTGCAACCCAGACATATTTAAAGTCTTTTCTGAGGACTTCCGCATACCTGATGAGCACTTTGTTGAATACCTTTCCATATTGCTTCTTTATCGCATGGATATGTTAGGTGGCGCTTTCGGGGGAATGTCACCAAATGATTTATTGAATAAAATACCTTCTTCCAGAGTGCAACATTTTCTTGATCTCTTCAGAAAGCTATGGATAGCTCCTTTATGGAATGAACCATCCATGACCAAAGGAAAAAATCTGCTACAGCACCTAGAATTGAGAAGCTACACCTGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

277

Amino Acids

32.47

Weight (kDa)

5.89

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 39 - 259 1.2e-53 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 109
AciI CCGC 3 cut(s) 322, 440, 586
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 718
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 4 cut(s) 47, 242, 417, 438
AflII CTTAAG 1 cut(s) 536
AflIII ACRYGT 2 cut(s) 142, 250
AgsI TTSAA 4 cut(s) 214, 512, 611, 691
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 824
AluBI AGCT 8 cut(s) 20, 87, 277, 406, 520, 742, 752, 819
AluI AGCT 8 cut(s) 20, 87, 277, 406, 520, 742, 752, 819
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 2 cut(s) 96, 332
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 20, 520
ApoI RAATTY 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 2 cut(s) 124, 185
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 666
AvaII GGWCC 1 cut(s) 124
BauI CACGAG 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 7, 507
BccI CCATC 2 cut(s) 398, 778
BciT130I CCWGG 1 cut(s) 826
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 96, 332
BfaI CTAG 1 cut(s) 806
BfmI CTRYAG 1 cut(s) 797
BfoI RGCGCY 1 cut(s) 660
BfrI CTTAAG 1 cut(s) 536
BisI GCNGC 2 cut(s) 21, 521
BlsI GCNGC 2 cut(s) 22, 522
BmcAI AGTACT 1 cut(s) 417
Bme1390I CCNGG 2 cut(s) 122, 826
Bme18I GGWCC 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 124, 185
BmiI GGNNCC 2 cut(s) 125, 126
BmrFI CCNGG 2 cut(s) 122, 826
BmsI GCATC 4 cut(s) 123, 376, 465, 495
BpuMI CCSGG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 826
BseCI ATCGAT 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 3 cut(s) 391, 490, 770
BseMII CTCAG 1 cut(s) 567
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 7, 507
Bsh1236I CGCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 186
BshVI ATCGAT 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 603
BsiSI CCGG 1 cut(s) 121
BsiWI CGTACG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 96, 332
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 4 cut(s) 49, 130, 408, 727
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 3 cut(s) 322, 440, 586
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 568
BspDI ATCGAT 1 cut(s) 52
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 125, 126
BspTI CTTAAG 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 4 cut(s) 49, 130, 408, 727
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 826
Bst6I CTCTTC 2 cut(s) 109, 737
BstAFI CTTAAG 1 cut(s) 536
BstDEI CTNAG 2 cut(s) 412, 576
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 391, 490, 770
BstFNI CGCG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 4 cut(s) 52, 133, 411, 730
BstMAI GTCTC 2 cut(s) 96, 332
BstMBI GATC 4 cut(s) 49, 130, 408, 727
BstMCI CGRYCG 1 cut(s) 52
BstNI CCWGG 1 cut(s) 826
BstSCI CCNGG 2 cut(s) 120, 824
BstSFI CTRYAG 1 cut(s) 797
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 7, 507
Bsu15I ATCGAT 1 cut(s) 52
BsuRI GGCC 1 cut(s) 186
BsuTUI ATCGAT 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 219
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 3 cut(s) 391, 490, 770
CfoI GCGC 1 cut(s) 659
Cfr13I GGNCC 2 cut(s) 124, 185
ClaI ATCGAT 1 cut(s) 52
Csp6I GTAC 4 cut(s) 46, 241, 416, 437
CviAII CATG 7 cut(s) 197, 220, 256, 350, 446, 640, 775
CviQI GTAC 4 cut(s) 46, 241, 416, 437
DdeI CTNAG 2 cut(s) 412, 576
DpnI GATC 4 cut(s) 51, 132, 410, 729
DpnII GATC 4 cut(s) 49, 130, 408, 727
DraI TTTAAA 1 cut(s) 565
DraIII CACNNNGTG 1 cut(s) 170
Eam1104I CTCTTC 2 cut(s) 109, 737
EarI CTCTTC 2 cut(s) 109, 737
Eco130I CCWWGG 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 718
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 824
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 7 cut(s) 200, 223, 259, 353, 449, 643, 778
FaqI GGGAC 1 cut(s) 110
FatI CATG 7 cut(s) 196, 219, 255, 349, 445, 639, 774
Fnu4HI GCNGC 2 cut(s) 21, 521
FokI GGATG 3 cut(s) 398, 497, 757
Fsp4HI GCNGC 2 cut(s) 21, 521
FspBI CTAG 1 cut(s) 806
GlaI GCGC 1 cut(s) 658
GluI GCNGC 2 cut(s) 21, 521
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 121
HhaI GCGC 1 cut(s) 659
Hin1II CATG 7 cut(s) 200, 223, 259, 353, 449, 643, 778
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HinfI GANTC 1 cut(s) 135
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 666
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 3 cut(s) 140, 577, 737
Hpy188III TCNNGA 2 cut(s) 708, 725
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 711
HpyCH4IV ACGT 2 cut(s) 142, 250
HpyCH4V TGCA 5 cut(s) 114, 335, 456, 549, 715
HpyF3I CTNAG 2 cut(s) 412, 576
HpySE526I ACGT 2 cut(s) 142, 250
Hsp92II CATG 7 cut(s) 200, 223, 259, 353, 449, 643, 778
HspAI GCGC 1 cut(s) 657
KflI GGGWCCC 1 cut(s) 124
Kzo9I GATC 4 cut(s) 49, 130, 408, 727
LmnI GCTCC 3 cut(s) 28, 259, 757
LpnPI CCDG 7 cut(s) 110, 134, 141, 567, 606, 721, 811
Lsp1109I GCAGC 2 cut(s) 7, 507
LweI GCATC 4 cut(s) 123, 376, 465, 495
MaeI CTAG 1 cut(s) 806
MaeII ACGT 2 cut(s) 142, 250
MaeIII GTNAC 1 cut(s) 672
MalI GATC 4 cut(s) 51, 132, 410, 729
MboI GATC 4 cut(s) 49, 130, 408, 727
MboII GAAGA 5 cut(s) 96, 385, 520, 696, 724
MhlI GDGCHC 1 cut(s) 603
MluCI AATT 6 cut(s) 209, 268, 317, 325, 362, 809
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 3 cut(s) 50, 60, 163
MnlI CCTC 5 cut(s) 67, 112, 148, 177, 571
MseI TTAA 3 cut(s) 246, 537, 564
MslI CAYNNNNRTG 4 cut(s) 354, 380, 429, 644
MspA1I CMGCKG 1 cut(s) 520
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 2 cut(s) 122, 826
MvaI CCWGG 1 cut(s) 826
MvnI CGCG 1 cut(s) 109
NciI CCSGG 1 cut(s) 122
NcoI CCATGG 1 cut(s) 219
NdeII GATC 4 cut(s) 49, 130, 408, 727
NlaIII CATG 7 cut(s) 200, 223, 259, 353, 449, 643, 778
NlaIV GGNNCC 2 cut(s) 125, 126
NmuCI GTSAC 1 cut(s) 672
PcsI WCGNNNNNNNCGW 1 cut(s) 139
Pfl23II CGTACG 1 cut(s) 45
PkrI GCNGC 2 cut(s) 22, 522
Ple19I CGATCG 1 cut(s) 52
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 824
PspGI CCWGG 1 cut(s) 824
PspLI CGTACG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 125, 126
PspPI GGNCC 2 cut(s) 124, 185
PspPPI RGGWCCY 1 cut(s) 124
PvuI CGATCG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 520
RsaI GTAC 4 cut(s) 47, 242, 417, 438
RsaNI GTAC 4 cut(s) 46, 241, 416, 437
RseI CAYNNNNRTG 4 cut(s) 354, 380, 429, 644
SaqAI TTAA 3 cut(s) 246, 537, 564
SatI GCNGC 2 cut(s) 21, 521
Sau3AI GATC 4 cut(s) 49, 130, 408, 727
Sau96I GGNCC 2 cut(s) 124, 185
ScaI AGTACT 1 cut(s) 417
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 2 cut(s) 122, 826
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 4 cut(s) 123, 376, 465, 495
SfcI CTRYAG 1 cut(s) 797
SinI GGWCC 1 cut(s) 124
SmiMI CAYNNNNRTG 4 cut(s) 354, 380, 429, 644
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 6 cut(s) 209, 268, 317, 325, 362, 809
SsiI CCGC 3 cut(s) 322, 440, 586
SspMI CTAG 1 cut(s) 806
StyD4I CCNGG 2 cut(s) 120, 824
StyI CCWWGG 1 cut(s) 219
TaiI ACGT 2 cut(s) 145, 253
TaqI TCGA 2 cut(s) 52, 133
TasI AATT 6 cut(s) 209, 268, 317, 325, 362, 809
TatI WGTACW 1 cut(s) 415
Tru1I TTAA 3 cut(s) 246, 537, 564
Tru9I TTAA 3 cut(s) 246, 537, 564
TseFI GTSAC 1 cut(s) 672
TseI GCWGC 2 cut(s) 20, 520
Tsp45I GTSAC 1 cut(s) 672
TspDTI ATGAA 5 cut(s) 182, 366, 375, 520, 780
TspGWI ACGGA 2 cut(s) 33, 497
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 1 cut(s) 362
XspI CTAG 1 cut(s) 806
ZrmI AGTACT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.