RchiOBHm_Chr6g0298141

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000131
Physical Location & Seq
Forward (+)
59676387 .. 59676767
381 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26761

Sequence Viewer

Length: 276 bp
ATGGGAGAGCTACAGCCAAAAAATCTGAAACATAAGTTGGAAGAGGTGTCTCCCCTTTCCCCCCAGTGTTGTATCTACAGGGTTCCAAAGAGACTACGTGATGTGAATGAGAAGGCATACACACCTCAGGTGGTCTCAATAGGCCCGCTTCACCATGGTAGAGAAGGCCTAGAAGCCATGGAAGATCACAAAATACGGTATGTGAAGGACTTTCTGGATGTTGAGAATATATACATCCCACATGGGAAAAATGGGACCTTGCCTATGGGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

91

Amino Acids

10.42

Weight (kDa)

7.82

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 25 - 73 2e-19 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 274
AciI CCGC 1 cut(s) 146
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 3 cut(s) 54, 85, 139
AoxI GGCC 2 cut(s) 142, 166
AspS9I GGNCC 2 cut(s) 143, 255
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 255
AxyI CCTNAGG 1 cut(s) 126
BcoDI GTCTC 3 cut(s) 54, 85, 139
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 2 cut(s) 11, 76
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 143, 255
BmiI GGNNCC 2 cut(s) 84, 256
BmrI ACTGGG 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 154, 177
Bse1I ACTGG 1 cut(s) 64
Bse21I CCTNAGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 154, 177
BseGI GGATG 2 cut(s) 223, 234
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 64
BshFI GGCC 2 cut(s) 144, 168
BslFI GGGAC 1 cut(s) 268
BsmAI GTCTC 3 cut(s) 54, 85, 139
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 2 cut(s) 144, 168
Bso31I GGTCTC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 2 cut(s) 154, 177
BspACI CCGC 1 cut(s) 146
BspANI GGCC 2 cut(s) 144, 168
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 84, 256
BspTNI GGTCTC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 154, 177
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 2 cut(s) 154, 177
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 2 cut(s) 154, 177
BstF5I GGATG 2 cut(s) 223, 234
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 3 cut(s) 54, 85, 139
BstMBI GATC 1 cut(s) 184
BstSFI CTRYAG 2 cut(s) 11, 76
Bsu36I CCTNAGG 1 cut(s) 126
BsuRI GGCC 2 cut(s) 144, 168
BtgI CCRYGG 2 cut(s) 154, 177
BtsCI GGATG 2 cut(s) 223, 234
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 143, 255
CviAII CATG 3 cut(s) 155, 178, 242
CviJI RGCY 5 cut(s) 10, 16, 144, 168, 176
CviKI_1 RGCY 5 cut(s) 10, 16, 144, 168, 176
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 154, 177
Eco147I AGGCCT 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 255
Eco81I CCTNAGG 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 255
EcoT14I CCWWGG 2 cut(s) 154, 177
ErhI CCWWGG 2 cut(s) 154, 177
FaeI CATG 3 cut(s) 158, 181, 245
FaqI GGGAC 1 cut(s) 268
FatI CATG 3 cut(s) 154, 177, 241
FauI CCCGC 1 cut(s) 153
FokI GGATG 2 cut(s) 221, 230
FspBI CTAG 1 cut(s) 170
HaeIII GGCC 2 cut(s) 144, 168
Hin1II CATG 3 cut(s) 158, 181, 245
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 106, 158, 199
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 158, 181, 245
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 4 cut(s) 64, 77, 113, 200
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 97
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 2 cut(s) 53, 194
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 2 cut(s) 37, 135
NcoI CCATGG 2 cut(s) 154, 177
NdeII GATC 1 cut(s) 184
NlaIII CATG 3 cut(s) 158, 181, 245
NlaIV GGNNCC 2 cut(s) 84, 256
PceI AGGCCT 1 cut(s) 168
Ppu21I YACGTR 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 255
PsiI TTATAA 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 84, 256
PspPI GGNCC 2 cut(s) 143, 255
PspPPI RGGWCCY 1 cut(s) 255
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 2 cut(s) 143, 255
SetI ASST 6 cut(s) 12, 48, 100, 127, 132, 260
SfcI CTRYAG 2 cut(s) 11, 76
SinI GGWCC 1 cut(s) 255
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 1 cut(s) 146
SspMI CTAG 1 cut(s) 170
StuI AGGCCT 1 cut(s) 168
StyI CCWWGG 2 cut(s) 154, 177
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 1 cut(s) 100
TscAI CASTG 1 cut(s) 71
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 255
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.