Rh6AG389300

Plant protein of unknown function

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
58817762 .. 58818379
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG389300.1

Sequence Viewer

Length: 330 bp
ATGGATGAGTTGGTGGACGATCCAAAAGATGTGGGGTTGCTTGTTAAGTATAAAATTGTTGAAAATGATCTCGGTGGTGGCGATCAGGATTTGGCTACCTTGATCAACAACCTTTCAACTGGGATTGTGTATAACAAAAACTACTTCTATTATGGTCATCTTTGTGGAGAGCTGGACAAGTTCTACAGTTCGAAGTGGCACAAATGGATGGCAAATTTGAGAAGCAGTTATTTCAATACCCCTTGGACAACTATTTCTTTCGTGGCAGCAGTTGTTCTCCTCATACTCACTGCCATTCAAACTATCTGCTCAATTATCTCTCTTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.32

Weight (kDa)

5.1

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 96 3.7e-28 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 214
AgsI TTSAA 4 cut(s) 62, 117, 235, 299
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
AlwI GGATC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 191
BbvI GCAGC 1 cut(s) 278
BccI CCATC 1 cut(s) 202
BclI TGATCA 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 10, 213
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 4 cut(s) 19, 67, 82, 102
BspPI GGATC 1 cut(s) 14
BspT104I TTCGAA 1 cut(s) 191
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 4 cut(s) 19, 67, 82, 102
BssT1I CCWWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 327
BstBI TTCGAA 1 cut(s) 191
BstF5I GGATG 2 cut(s) 10, 213
BstKTI GATC 4 cut(s) 22, 70, 85, 105
BstMBI GATC 4 cut(s) 19, 67, 82, 102
BstSFI CTRYAG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 278
BtsCI GGATG 2 cut(s) 10, 213
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviJI RGCY 2 cut(s) 95, 172
CviKI_1 RGCY 2 cut(s) 95, 172
DpnI GATC 4 cut(s) 21, 69, 84, 104
DpnII GATC 4 cut(s) 19, 67, 82, 102
Eco130I CCWWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaiI YATR 4 cut(s) 51, 132, 153, 284
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 2 cut(s) 17, 220
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
Hpy166II GTNNAC 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 326
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 4 cut(s) 19, 67, 82, 102
LpnPI CCDG 3 cut(s) 71, 105, 158
Lsp1109I GCAGC 1 cut(s) 278
MaeII ACGT 1 cut(s) 326
MalI GATC 4 cut(s) 21, 69, 84, 104
MboI GATC 4 cut(s) 19, 67, 82, 102
MluCI AATT 3 cut(s) 54, 214, 312
MnlI CCTC 1 cut(s) 290
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 162
NdeII GATC 4 cut(s) 19, 67, 82, 102
NspV TTCGAA 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PkrI GCNGC 1 cut(s) 268
Ppu21I YACGTR 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 4 cut(s) 19, 67, 82, 102
SetI ASST 4 cut(s) 101, 114, 174, 329
SfcI CTRYAG 1 cut(s) 184
SfuI TTCGAA 1 cut(s) 191
SgeI CNNG 9 cut(s) 53, 83, 98, 112, 132, 185, 190, 255, 274
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 3 cut(s) 54, 214, 312
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 191
TasI AATT 3 cut(s) 54, 214, 312
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 266
TspRI CASTG 1 cut(s) 295
XapI RAATTY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.