Prupe.1G476100_v2.0.a1

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000131
Physical Location & Seq
Reverse (-)
39685975 .. 39687162
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G476100.1

Sequence Viewer

Length: 1056 bp
ATGTCCTTTTTGGTCATTATACACACTAAAAGTACTTCTGATAAAAATTTACCAAACACTTTGACTACTCACAGCAGTTTTTCAAAAACAGTTTACCAAACGCCTAGTAGCTTTTTTTCACAGCTAATTATTTTCACAGCACAGCAGAAGCATATTTTTTTAAAAGCACAACGCCGCCAAACTAGCCCTAAGAAGTTTAACATTGCTACTTTTGTGAATATCATTCTAGTTGATGCCGCCTTTGTCATTGAGCTATTGTTGAGGAATAAATCCGAAGAAAAATTTCAGGAAGAAAAATTGCAGGATGATGATGCTTGGATATTTAAAAAACCATGGGTGCTACAAAATATATTGCCTGACATGCTTATGCTCGTAAATCAGCTGCCATTTTTCATTCTCGAGGATCTTTACAATCTCACAGGTGCTCAGACTGGGGAGCCTTCAATAATTGAACTCTCTTACAAGTTCTTCCAACAGGCACTGCGTTTAGAAAACTTGGAGAACTCACCAGCCTTCCGTAAGTCTTTTATGCCTCCTGATCCTAAAAAACCTTTACATTTTGTTGATTTTATTAGAACTTTACATCTGCCAAAAGAAAAAAAAATGGAGGGCTCCAAACTTACACATAGAAATCTCATTGCCTTTGAACAAGGCCATTGCGTGGATAAATACATAAGCGATTATGTTTTCATCCTGGATAAATTTGTAAACACCCCAAAGGATGTAGAGTTGCTTGTTGACAATGGAATTGTTGTAAACACGCTAGGTGACAACAATAAGGTTTCCATTATGATTAACAAGCTTTGCAGTAAAGTTGCTCCGAACCACGGAAACTACTATTTTGGTGATCTTGCTGGCAAACTAAACGAGTACTGCAAGAAGACCACGAACAGACGGAAGGCAAATTTGAGACAAAAGTATTTCAACACACCTTGGGCAGCTATTTCTCTCTTTGCAGCTATTATTCTTCTGATACTCATTGTCATACAAACAGTGTGCTCTATTATCTCTGTTATTGATCAAGTATTAGCAGCAGGGCCGTTCCTGAGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

352

Amino Acids

40.33

Weight (kDa)

9.28

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 661
AciI CCGC 2 cut(s) 175, 237
AclWI GGATC 2 cut(s) 411, 533
AcsI RAATTY 4 cut(s) 46, 281, 701, 904
AfaI GTAC 2 cut(s) 34, 872
AfiI CCNNNNNNNGG 2 cut(s) 661, 827
AgsI TTSAA 5 cut(s) 84, 444, 452, 647, 925
AjnI CCWGG 1 cut(s) 693
AluBI AGCT 7 cut(s) 111, 124, 253, 382, 802, 941, 959
AluI AGCT 7 cut(s) 111, 124, 253, 382, 802, 941, 959
Alw21I GWGCWC 2 cut(s) 427, 1001
Alw26I GTCTC 1 cut(s) 904
AlwI GGATC 2 cut(s) 411, 533
AlwNI CAGNNNCTG 1 cut(s) 481
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 2 cut(s) 652, 1037
ApeKI GCWGC 4 cut(s) 382, 938, 956, 1031
ApoI RAATTY 4 cut(s) 46, 281, 701, 904
Asp700I GAANNNNTTC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 1037
AsuHPI GGTGA 3 cut(s) 498, 779, 857
AvaI CYCGRG 1 cut(s) 398
BanII GRGCYC 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 887
Bbv12I GWGCWC 2 cut(s) 427, 1001
BbvI GCAGC 4 cut(s) 369, 950, 968, 1043
BceAI ACGGC 1 cut(s) 1024
BciT130I CCWGG 1 cut(s) 695
BclI TGATCA 1 cut(s) 1018
BcoDI GTCTC 1 cut(s) 904
BfaI CTAG 4 cut(s) 105, 183, 227, 764
BisI GCNGC 6 cut(s) 175, 237, 383, 939, 957, 1032
BlsI GCNGC 6 cut(s) 176, 238, 384, 940, 958, 1033
BmcAI AGTACT 2 cut(s) 34, 872
Bme1390I CCNGG 1 cut(s) 695
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 1037
BmiI GGNNCC 2 cut(s) 438, 613
BmrFI CCNGG 1 cut(s) 695
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 2 cut(s) 223, 301
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 887
BsaJI CCNNGG 3 cut(s) 332, 826, 932
Bsc4I CCNNNNNNNGG 2 cut(s) 661, 827
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 3 cut(s) 201, 636, 655
BseBI CCWGG 1 cut(s) 695
BseDI CCNNGG 3 cut(s) 332, 826, 932
BseGI GGATG 3 cut(s) 310, 690, 727
BseLI CCNNNNNNNGG 2 cut(s) 661, 827
BseMI GCAATG 3 cut(s) 201, 636, 655
BseMII CTCAG 2 cut(s) 440, 1037
BseNI ACTGG 1 cut(s) 436
BseXI GCAGC 4 cut(s) 369, 950, 968, 1043
BshFI GGCC 2 cut(s) 654, 1039
BsiHKAI GWGCWC 2 cut(s) 427, 1001
BsiHKCI CYCGRG 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 661, 827
BsmAI GTCTC 1 cut(s) 904
BsnI GGCC 2 cut(s) 654, 1039
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 3 cut(s) 427, 614, 1001
Bsp143I GATC 4 cut(s) 403, 538, 847, 1018
Bsp19I CCATGG 1 cut(s) 332
BspACI CCGC 2 cut(s) 175, 237
BspANI GGCC 2 cut(s) 654, 1039
BspCNI CTCAG 2 cut(s) 439, 1038
BspLI GGNNCC 2 cut(s) 438, 613
BspPI GGATC 2 cut(s) 411, 533
BsrDI GCAATG 3 cut(s) 201, 636, 655
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 3 cut(s) 332, 826, 932
BssMI GATC 4 cut(s) 403, 538, 847, 1018
BssT1I CCWWGG 2 cut(s) 332, 932
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 2 cut(s) 91, 994
BstC8I GCNNGC 1 cut(s) 856
BstDEI CTNAG 3 cut(s) 189, 426, 1046
BstDSI CCRYGG 2 cut(s) 332, 826
BstF5I GGATG 3 cut(s) 310, 690, 727
BstKTI GATC 4 cut(s) 406, 541, 850, 1021
BstMAI GTCTC 1 cut(s) 904
BstMBI GATC 4 cut(s) 403, 538, 847, 1018
BstMWI GCNNNNNNNGC 2 cut(s) 183, 361
BstNI CCWGG 1 cut(s) 695
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 693
BstV1I GCAGC 4 cut(s) 369, 950, 968, 1043
BstV2I GAAGAC 1 cut(s) 887
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 2 cut(s) 654, 1039
BtgI CCRYGG 2 cut(s) 332, 826
BtsCI GGATG 3 cut(s) 310, 690, 727
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 479, 999
Cac8I GCNNGC 1 cut(s) 856
CaiI CAGNNNCTG 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 1037
Csp6I GTAC 2 cut(s) 33, 871
CviAII CATG 2 cut(s) 333, 361
CviQI GTAC 2 cut(s) 33, 871
DdeI CTNAG 3 cut(s) 189, 426, 1046
DpnI GATC 4 cut(s) 405, 540, 849, 1020
DpnII GATC 4 cut(s) 403, 538, 847, 1018
DraI TTTAAA 2 cut(s) 162, 325
Eco130I CCWWGG 2 cut(s) 332, 932
Eco24I GRGCYC 1 cut(s) 614
Eco88I CYCGRG 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 693
EcoT14I CCWWGG 2 cut(s) 332, 932
EcoT38I GRGCYC 1 cut(s) 614
ErhI CCWWGG 2 cut(s) 332, 932
FaeI CATG 2 cut(s) 336, 364
FatI CATG 2 cut(s) 332, 360
FbaI TGATCA 1 cut(s) 1018
Fnu4HI GCNGC 6 cut(s) 175, 237, 383, 939, 957, 1032
FokI GGATG 3 cut(s) 317, 677, 734
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 6 cut(s) 175, 237, 383, 939, 957, 1032
FspBI CTAG 4 cut(s) 105, 183, 227, 764
GluI GCNGC 6 cut(s) 175, 237, 383, 939, 957, 1032
HaeIII GGCC 2 cut(s) 654, 1039
Hin1II CATG 2 cut(s) 336, 364
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 800
HphI GGTGA 3 cut(s) 498, 779, 857
Hpy166II GTNNAC 4 cut(s) 94, 709, 739, 757
Hpy188I TCNGA 5 cut(s) 40, 274, 429, 822, 972
Hpy188III TCNNGA 4 cut(s) 287, 398, 536, 1045
Hpy8I GTNNAC 4 cut(s) 94, 709, 739, 757
HpyAV CCTTC 3 cut(s) 450, 523, 892
HpyCH4III ACNGT 2 cut(s) 91, 994
HpyCH4V TGCA 4 cut(s) 301, 807, 876, 956
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 361
HpyF3I CTNAG 3 cut(s) 189, 426, 1046
Hsp92II CATG 2 cut(s) 336, 364
Ksp22I TGATCA 1 cut(s) 1018
Kzo9I GATC 4 cut(s) 403, 538, 847, 1018
LmnI GCTCC 3 cut(s) 436, 617, 823
Lsp1109I GCAGC 4 cut(s) 369, 950, 968, 1043
LweI GCATC 2 cut(s) 223, 301
MaeI CTAG 4 cut(s) 105, 183, 227, 764
MaeIII GTNAC 1 cut(s) 767
MalI GATC 4 cut(s) 405, 540, 849, 1020
MboI GATC 4 cut(s) 403, 538, 847, 1018
MboII GAAGA 5 cut(s) 287, 302, 460, 892, 959
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 3 cut(s) 427, 614, 1001
MluCI AATT 8 cut(s) 46, 126, 281, 296, 447, 701, 747, 904
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 4 cut(s) 255, 394, 543, 601
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 4 cut(s) 161, 198, 324, 795
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 382
MspR9I CCNGG 1 cut(s) 695
MvaI CCWGG 1 cut(s) 695
MwoI GCNNNNNNNGC 2 cut(s) 183, 361
NcoI CCATGG 1 cut(s) 332
NdeII GATC 4 cut(s) 403, 538, 847, 1018
NlaIII CATG 2 cut(s) 336, 364
NlaIV GGNNCC 2 cut(s) 438, 613
NmuCI GTSAC 1 cut(s) 767
NspI RCATGY 1 cut(s) 364
PaeR7I CTCGAG 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 282
PflMI CCANNNNNTGG 1 cut(s) 661
PfoI TCCNGGA 1 cut(s) 693
PkrI GCNGC 6 cut(s) 176, 238, 384, 940, 958, 1033
Psp6I CCWGG 1 cut(s) 693
PspGI CCWGG 1 cut(s) 693
PspN4I GGNNCC 2 cut(s) 438, 613
PspPI GGNCC 1 cut(s) 1037
PstNI CAGNNNCTG 1 cut(s) 481
PsuI RGATCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 2 cut(s) 34, 872
RsaNI GTAC 2 cut(s) 33, 871
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 4 cut(s) 161, 198, 324, 795
SatI GCNGC 6 cut(s) 175, 237, 383, 939, 957, 1032
Sau3AI GATC 4 cut(s) 403, 538, 847, 1018
Sau96I GGNCC 1 cut(s) 1037
ScaI AGTACT 2 cut(s) 34, 872
ScrFI CCNGG 1 cut(s) 695
SduI GDGCHC 3 cut(s) 427, 614, 1001
SfaNI GCATC 2 cut(s) 223, 301
Sfr274I CTCGAG 1 cut(s) 398
SlaI CTCGAG 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 8 cut(s) 46, 126, 281, 296, 447, 701, 747, 904
SsiI CCGC 2 cut(s) 175, 237
SspMI CTAG 4 cut(s) 105, 183, 227, 764
StyD4I CCNGG 1 cut(s) 693
StyI CCWWGG 2 cut(s) 332, 932
TaaI ACNGT 2 cut(s) 91, 994
TaqI TCGA 1 cut(s) 399
TasI AATT 8 cut(s) 46, 126, 281, 296, 447, 701, 747, 904
TatI WGTACW 2 cut(s) 32, 870
TauI GCSGC 2 cut(s) 177, 239
Tru1I TTAA 4 cut(s) 161, 198, 324, 795
Tru9I TTAA 4 cut(s) 161, 198, 324, 795
TscAI CASTG 2 cut(s) 486, 999
TseFI GTSAC 1 cut(s) 767
TseI GCWGC 4 cut(s) 382, 938, 956, 1031
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 2 cut(s) 382, 679
TspGWI ACGGA 3 cut(s) 506, 843, 910
TspRI CASTG 2 cut(s) 486, 999
Van91I CCANNNNNTGG 1 cut(s) 661
XapI RAATTY 4 cut(s) 46, 281, 701, 904
XceI RCATGY 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 4 cut(s) 105, 183, 227, 764
ZrmI AGTACT 2 cut(s) 34, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.